PcyM_1418700 | U4/U6.U5 tri-snRNP-associated protein 2, putative

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0036459 GO:0008270
Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity zinc ion binding
Computed_GO_Process_IDs: GO:0016579
Computed_GO_Processes: protein deubiquitination
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PcyM_1418700	OTHER	0.999995	0.000002	0.000003

No Results

Fasta :-
>PcyM_1418700 MEKKARKKNQNDKALAGNKRGRKKKESHSEEGEEADQAGEAKQTIATNAAKQTNAAKQTI ATNAASVTSFTEARLVPRGAVRGRVCPYLRTINRNLLDFDFEKLCSISMSNLHVYACLVC GLYFQGIGKGTYAYTHALEKNHYVFINLETCKTCCLPENYEIEDASLNDIKYFLKPMYTI QQVEYICRNSILGKSLDGADFFPGFVGLNNLKNTDYCNVIIQLVCSIIPLRNYFLIFQNK KYMTKNIISSLSELIKKIFNPRNFKGVVSPHEFLQTVGIESKKNFKIGSKNDPLDFFLWL ISKIHRYEERALRKKGIKGRTGKKRKIGQRGENVKGADGPSGGQNKGEEGEEDEGEGEED EGEGEEDGEDEEDEEDGEDEDEEGKIQPGHPLSQLNAMLSSSSESHMSEEAAPGMDSTRK GKGKKKKKKKKKWKYDKVNIIDYCFDGELIIKTKKKKKKKKSSEGDDNINSAHNTKKREK NNTYSERNAREDGKFSHHLDNEGGEEDDVSDADNEDDTDLADGEELNGKKNYVTEKIPFR TLSLKLPNPPIFKSTTESNIIPQVSIFELLTKFDGETESFLNEKSEPSTLIISKLPKYLI FTIKRFSKNNFFVEKNGTIVNFVIKNLDMKDYVHEDYLEKNPVTKYNLIANIFHSGSVSS GTYKIHVLNQASNEWYEMEDLHVITVLPQLVLLPESCVQLYQRQDVQLNGEVP
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1418700.fa Sequence name : PcyM_1418700 Sequence length : 713 VALUES OF COMPUTED PARAMETERS Coef20 : 3.503 CoefTot : 0.000 ChDiff : -5 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.235 1.659 0.305 0.589 MesoH : -0.559 0.367 -0.292 0.222 MuHd_075 : 36.790 19.929 10.773 5.925 MuHd_095 : 14.688 10.372 4.290 3.531 MuHd_100 : 15.295 11.732 4.216 4.029 MuHd_105 : 15.270 9.830 3.179 3.998 Hmax_075 : 0.583 2.683 -2.927 1.575 Hmax_095 : -17.400 -2.000 -7.002 -0.920 Hmax_100 : -13.400 -1.600 -5.994 -0.200 Hmax_105 : -18.900 -3.617 -6.505 -0.093 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9772 0.0228 DFMC : 0.9738 0.0262

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 713 PcyM_1418700 MEKKARKKNQNDKALAGNKRGRKKKESHSEEGEEADQAGEAKQTIATNAAKQTNAAKQTIATNAASVTSFTEARLVPRGA 80 VRGRVCPYLRTINRNLLDFDFEKLCSISMSNLHVYACLVCGLYFQGIGKGTYAYTHALEKNHYVFINLETCKTCCLPENY 160 EIEDASLNDIKYFLKPMYTIQQVEYICRNSILGKSLDGADFFPGFVGLNNLKNTDYCNVIIQLVCSIIPLRNYFLIFQNK 240 KYMTKNIISSLSELIKKIFNPRNFKGVVSPHEFLQTVGIESKKNFKIGSKNDPLDFFLWLISKIHRYEERALRKKGIKGR 320 TGKKRKIGQRGENVKGADGPSGGQNKGEEGEEDEGEGEEDEGEGEEDGEDEEDEEDGEDEDEEGKIQPGHPLSQLNAMLS 400 SSSESHMSEEAAPGMDSTRKGKGKKKKKKKKKWKYDKVNIIDYCFDGELIIKTKKKKKKKKSSEGDDNINSAHNTKKREK 480 NNTYSERNAREDGKFSHHLDNEGGEEDDVSDADNEDDTDLADGEELNGKKNYVTEKIPFRTLSLKLPNPPIFKSTTESNI 560 IPQVSIFELLTKFDGETESFLNEKSEPSTLIISKLPKYLIFTIKRFSKNNFFVEKNGTIVNFVIKNLDMKDYVHEDYLEK 640 NPVTKYNLIANIFHSGSVSSGTYKIHVLNQASNEWYEMEDLHVITVLPQLVLLPESCVQLYQRQDVQLNGEVP 720 ........................P....................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ......................................................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PcyM_1418700 3 ----MEK|KA 0.068 . PcyM_1418700 4 ---MEKK|AR 0.102 . PcyM_1418700 6 -MEKKAR|KK 0.108 . PcyM_1418700 7 MEKKARK|KN 0.073 . PcyM_1418700 8 EKKARKK|NQ 0.097 . PcyM_1418700 13 KKNQNDK|AL 0.072 . PcyM_1418700 19 KALAGNK|RG 0.056 . PcyM_1418700 20 ALAGNKR|GR 0.247 . PcyM_1418700 22 AGNKRGR|KK 0.104 . PcyM_1418700 23 GNKRGRK|KK 0.175 . PcyM_1418700 24 NKRGRKK|KE 0.158 . PcyM_1418700 25 KRGRKKK|ES 0.666 *ProP* PcyM_1418700 42 DQAGEAK|QT 0.078 . PcyM_1418700 51 IATNAAK|QT 0.077 . PcyM_1418700 57 KQTNAAK|QT 0.070 . PcyM_1418700 74 TSFTEAR|LV 0.122 . PcyM_1418700 78 EARLVPR|GA 0.136 . PcyM_1418700 82 VPRGAVR|GR 0.069 . PcyM_1418700 84 RGAVRGR|VC 0.084 . PcyM_1418700 90 RVCPYLR|TI 0.088 . PcyM_1418700 94 YLRTINR|NL 0.081 . PcyM_1418700 103 LDFDFEK|LC 0.067 . PcyM_1418700 129 YFQGIGK|GT 0.072 . PcyM_1418700 140 YTHALEK|NH 0.058 . PcyM_1418700 152 INLETCK|TC 0.058 . PcyM_1418700 171 ASLNDIK|YF 0.063 . PcyM_1418700 175 DIKYFLK|PM 0.066 . PcyM_1418700 188 QVEYICR|NS 0.072 . PcyM_1418700 194 RNSILGK|SL 0.146 . PcyM_1418700 212 VGLNNLK|NT 0.057 . PcyM_1418700 231 CSIIPLR|NY 0.080 . PcyM_1418700 240 FLIFQNK|KY 0.063 . PcyM_1418700 241 LIFQNKK|YM 0.100 . PcyM_1418700 245 NKKYMTK|NI 0.071 . PcyM_1418700 256 SLSELIK|KI 0.070 . PcyM_1418700 257 LSELIKK|IF 0.081 . PcyM_1418700 262 KKIFNPR|NF 0.092 . PcyM_1418700 265 FNPRNFK|GV 0.122 . PcyM_1418700 282 TVGIESK|KN 0.067 . PcyM_1418700 283 VGIESKK|NF 0.084 . PcyM_1418700 286 ESKKNFK|IG 0.063 . PcyM_1418700 290 NFKIGSK|ND 0.051 . PcyM_1418700 303 FLWLISK|IH 0.058 . PcyM_1418700 306 LISKIHR|YE 0.120 . PcyM_1418700 310 IHRYEER|AL 0.115 . PcyM_1418700 313 YEERALR|KK 0.269 . PcyM_1418700 314 EERALRK|KG 0.089 . PcyM_1418700 315 ERALRKK|GI 0.118 . PcyM_1418700 318 LRKKGIK|GR 0.066 . PcyM_1418700 320 KKGIKGR|TG 0.091 . PcyM_1418700 323 IKGRTGK|KR 0.166 . PcyM_1418700 324 KGRTGKK|RK 0.088 . PcyM_1418700 325 GRTGKKR|KI 0.427 . PcyM_1418700 326 RTGKKRK|IG 0.111 . PcyM_1418700 330 KRKIGQR|GE 0.109 . PcyM_1418700 335 QRGENVK|GA 0.080 . PcyM_1418700 346 PSGGQNK|GE 0.085 . PcyM_1418700 385 DEDEEGK|IQ 0.053 . PcyM_1418700 419 PGMDSTR|KG 0.077 . PcyM_1418700 420 GMDSTRK|GK 0.101 . PcyM_1418700 422 DSTRKGK|GK 0.147 . PcyM_1418700 424 TRKGKGK|KK 0.083 . PcyM_1418700 425 RKGKGKK|KK 0.110 . PcyM_1418700 426 KGKGKKK|KK 0.100 . PcyM_1418700 427 GKGKKKK|KK 0.160 . PcyM_1418700 428 KGKKKKK|KK 0.106 . PcyM_1418700 429 GKKKKKK|KK 0.144 . PcyM_1418700 430 KKKKKKK|KK 0.145 . PcyM_1418700 431 KKKKKKK|KW 0.125 . PcyM_1418700 432 KKKKKKK|WK 0.193 . PcyM_1418700 434 KKKKKWK|YD 0.082 . PcyM_1418700 437 KKWKYDK|VN 0.059 . PcyM_1418700 452 DGELIIK|TK 0.054 . PcyM_1418700 454 ELIIKTK|KK 0.065 . PcyM_1418700 455 LIIKTKK|KK 0.090 . PcyM_1418700 456 IIKTKKK|KK 0.107 . PcyM_1418700 457 IKTKKKK|KK 0.108 . PcyM_1418700 458 KTKKKKK|KK 0.127 . PcyM_1418700 459 TKKKKKK|KK 0.193 . PcyM_1418700 460 KKKKKKK|KS 0.182 . PcyM_1418700 461 KKKKKKK|SS 0.281 . PcyM_1418700 476 NSAHNTK|KR 0.068 . PcyM_1418700 477 SAHNTKK|RE 0.096 . PcyM_1418700 478 AHNTKKR|EK 0.189 . PcyM_1418700 480 NTKKREK|NN 0.069 . PcyM_1418700 487 NNTYSER|NA 0.106 . PcyM_1418700 490 YSERNAR|ED 0.329 . PcyM_1418700 494 NAREDGK|FS 0.074 . PcyM_1418700 529 GEELNGK|KN 0.062 . PcyM_1418700 530 EELNGKK|NY 0.069 . PcyM_1418700 536 KNYVTEK|IP 0.066 . PcyM_1418700 540 TEKIPFR|TL 0.111 . PcyM_1418700 545 FRTLSLK|LP 0.059 . PcyM_1418700 553 PNPPIFK|ST 0.076 . PcyM_1418700 572 IFELLTK|FD 0.071 . PcyM_1418700 584 ESFLNEK|SE 0.067 . PcyM_1418700 594 STLIISK|LP 0.057 . PcyM_1418700 597 IISKLPK|YL 0.077 . PcyM_1418700 604 YLIFTIK|RF 0.068 . PcyM_1418700 605 LIFTIKR|FS 0.182 . PcyM_1418700 608 TIKRFSK|NN 0.162 . PcyM_1418700 615 NNFFVEK|NG 0.066 . PcyM_1418700 625 IVNFVIK|NL 0.070 . PcyM_1418700 630 IKNLDMK|DY 0.073 . PcyM_1418700 640 HEDYLEK|NP 0.054 . PcyM_1418700 645 EKNPVTK|YN 0.073 . PcyM_1418700 664 VSSGTYK|IH 0.062 . PcyM_1418700 703 CVQLYQR|QD 0.079 . ____________________________^_________________

Fasta :-
>PcyM_1418700 ATGGAAAAGAAAGCGAGAAAGAAGAACCAAAATGACAAGGCTCTCGCTGGTAACAAGCGG GGAAGGAAGAAAAAGGAGAGTCACTCCGAGGAGGGGGAGGAGGCAGACCAAGCTGGCGAG GCGAAGCAGACAATCGCGACAAACGCGGCGAAGCAGACAAACGCGGCGAAGCAGACAATC GCGACAAACGCGGCCAGTGTGACCAGTTTCACGGAGGCGCGGCTCGTCCCGCGGGGCGCG GTAAGGGGCAGGGTGTGCCCGTACCTGCGTACCATCAACAGAAACCTGCTGGACTTTGAT TTCGAAAAGTTGTGCAGCATCAGCATGTCAAACTTGCATGTATACGCATGCCTAGTCTGC GGACTGTACTTCCAAGGAATAGGAAAAGGAACCTATGCATACACACACGCACTGGAAAAA AACCATTACGTCTTCATAAATTTGGAAACATGCAAAACGTGTTGCCTTCCAGAAAATTAC GAAATCGAAGATGCATCTCTAAATGATATAAAATATTTCTTAAAACCAATGTATACCATA CAACAAGTAGAATACATATGTCGTAATTCCATTTTGGGAAAATCGCTAGATGGTGCAGAT TTTTTTCCTGGCTTTGTAGGACTCAACAATTTAAAAAATACGGACTACTGCAATGTTATT ATTCAACTTGTGTGTAGCATTATTCCATTGAGAAATTATTTTTTAATATTTCAAAATAAA AAATATATGACCAAAAATATTATTTCTTCTTTATCTGAATTGATTAAAAAAATTTTTAAC CCTCGAAATTTCAAGGGGGTTGTTTCTCCTCATGAGTTTTTACAAACAGTTGGCATTGAA TCTAAGAAGAACTTCAAAATTGGGTCTAAAAATGATCCGCTAGACTTTTTTCTATGGTTA ATTAGTAAAATACATAGGTATGAGGAGAGGGCGCTGCGGAAGAAGGGCATTAAGGGTAGG ACGGGCAAGAAGAGGAAGATCGGTCAAAGGGGAGAAAACGTTAAAGGGGCAGATGGACCA TCGGGCGGACAAAATAAAGGGGAGGAAGGAGAAGAAGACGAAGGAGAAGGCGAAGAAGAC GAAGGAGAAGGCGAAGAAGACGGAGAAGACGAAGAAGACGAAGAAGACGGAGAAGACGAA GACGAAGAAGGCAAAATTCAACCGGGGCACCCCCTCTCGCAGTTGAACGCTATGTTGTCT TCCTCCAGCGAGTCACATATGTCGGAAGAGGCTGCCCCTGGCATGGATTCAACACGAAAA GGAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGAAGTACGACAAGGTAAACATT ATCGATTACTGCTTTGATGGGGAGCTAATTATCAAAACGAAAAAAAAAAAAAAAAAAAAA AAAAGTTCGGAAGGAGATGATAATATCAACAGTGCCCATAATACAAAAAAGAGGGAAAAG AACAACACGTACAGTGAACGAAATGCACGCGAAGATGGTAAATTTTCTCACCATTTGGAT AATGAAGGAGGGGAAGAGGATGACGTAAGTGATGCGGACAACGAAGACGATACAGACTTG GCTGATGGGGAAGAATTGAACGGAAAAAAAAATTACGTAACGGAAAAAATTCCATTTCGA ACGCTTTCCTTGAAGCTACCCAACCCACCCATTTTTAAAAGCACAACTGAAAGTAACATC ATACCACAGGTATCCATTTTCGAGCTGTTGACAAAATTCGATGGAGAAACGGAGTCTTTC TTAAATGAAAAATCGGAGCCAAGCACTTTAATCATTTCCAAGTTGCCCAAATATTTAATC TTCACCATTAAAAGGTTTTCCAAAAATAATTTTTTTGTCGAAAAAAATGGCACCATTGTT AATTTTGTCATAAAAAATTTAGACATGAAAGATTATGTACATGAAGATTATCTGGAGAAG AATCCTGTGACCAAGTACAATTTAATTGCTAACATTTTTCACAGTGGCTCGGTTAGCAGT GGCACTTACAAAATTCATGTCCTCAACCAGGCGTCGAATGAGTGGTATGAAATGGAGGAC CTGCATGTGATTACCGTTTTGCCCCAGCTGGTTCTCCTACCCGAGTCCTGTGTGCAGTTG TATCAGCGCCAGGACGTGCAGCTCAACGGGGAGGTCCCCTGA
Download Fasta

Fasta :-

MEKKARKKNQNDKALAGNKRGRKKKESHSEEGEEADQAGEAKQTIATNAAKQTNAAKQTI ATNAASVTSFTEARLVPRGAVRGRVCPYLRTINRNLLDFDFEKLCSISMSNLHVYACLVC GLYFQGIGKGTYAYTHALEKNHYVFINLETCKTCCLPENYEIEDASLNDIKYFLKPMYTI QQVEYICRNSILGKSLDGADFFPGFVGLNNLKNTDYCNVIIQLVCSIIPLRNYFLIFQNK KYMTKNIISSLSELIKKIFNPRNFKGVVSPHEFLQTVGIESKKNFKIGSKNDPLDFFLWL ISKIHRYEERALRKKGIKGRTGKKRKIGQRGENVKGADGPSGGQNKGEEGEEDEGEGEED EGEGEEDGEDEEDEEDGEDEDEEGKIQPGHPLSQLNAMLSSSSESHMSEEAAPGMDSTRK GKGKKKKKKKKKWKYDKVNIIDYCFDGELIIKTKKKKKKKKSSEGDDNINSAHNTKKREK NNTYSERNAREDGKFSHHLDNEGGEEDDVSDADNEDDTDLADGEELNGKKNYVTEKIPFR TLSLKLPNPPIFKSTTESNIIPQVSIFELLTKFDGETESFLNEKSEPSTLIISKLPKYLI FTIKRFSKNNFFVEKNGTIVNFVIKNLDMKDYVHEDYLEKNPVTKYNLIANIFHSGSVSS GTYKIHVLNQASNEWYEMEDLHVITVLPQLVLLPESCVQLYQRQDVQLNGEVP

Zf-UBP

title: Active Site
coordinates: N210,D215,T662,D680

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	PcyM_1418700	269 S	KGVVSPHEF	0.992	unsp	PcyM_1418700	269 S	KGVVSPHEF	0.992	unsp	PcyM_1418700	269 S	KGVVSPHEF	0.992	unsp	PcyM_1418700	281 S	VGIESKKNF	0.991	unsp	PcyM_1418700	405 S	SSSESHMSE	0.991	unsp	PcyM_1418700	408 S	ESHMSEEAA	0.993	unsp	PcyM_1418700	462 S	KKKKSSEGD	0.997	unsp	PcyM_1418700	463 S	KKKSSEGDD	0.997	unsp	PcyM_1418700	510 S	EDDVSDADN	0.994	unsp	PcyM_1418700	607 S	IKRFSKNNF	0.994	unsp	PcyM_1418700	27 S	KKKESHSEE	0.997	unsp	PcyM_1418700	29 S	KESHSEEGE	0.997	unsp

PcyM_1418700 | U4/U6.U5 tri-snRNP-associated protein 2, putative

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0036459 GO:0008270

Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity zinc ion binding

Computed_GO_Process_IDs: GO:0016579

Computed_GO_Processes: protein deubiquitination

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Zf-UBP

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India