PcyM_1452800 | ATP-dependent protease subunit ClpQ, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1452800mTP0.1646070.0022130.833180CS pos: 45-46. VRK-NN. Pr: 0.1703
No Results

  • Fasta :-

    >PcyM_1452800 MFVRHLSGLIRAPPAIGRAAQRNYFAPTGRLLPPRHGTTILCVRKNNEVCLIGDGMVSQG TMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRT DRYLRHLEAVLIVADKDVLLEVTGNGDVLEPSGNVLGTGSGGPYAIAAARALYDVENLSA KDIAYKAMNIAADMCCHTNNNFICETL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1452800.fa Sequence name : PcyM_1452800 Sequence length : 207 VALUES OF COMPUTED PARAMETERS Coef20 : 4.330 CoefTot : -1.198 ChDiff : 4 ZoneTo : 47 KR : 8 DE : 0 CleavSite : 40 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.147 1.300 0.135 0.534 MesoH : -0.738 0.352 -0.357 0.228 MuHd_075 : 45.045 21.814 11.666 8.847 MuHd_095 : 38.498 18.343 8.572 9.547 MuHd_100 : 43.187 23.574 9.208 10.934 MuHd_105 : 49.045 30.975 12.113 12.392 Hmax_075 : 11.200 10.733 3.124 4.282 Hmax_095 : 10.150 8.662 1.997 4.445 Hmax_100 : 16.300 16.400 3.164 6.800 Hmax_105 : 15.400 19.600 3.505 7.420 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0088 0.9912 DFMC : 0.0117 0.9883 This protein is probably imported in mitochondria. f(Ser) = 0.0213 f(Arg) = 0.1489 CMi = 0.07639 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 207 PcyM_1452800 MFVRHLSGLIRAPPAIGRAAQRNYFAPTGRLLPPRHGTTILCVRKNNEVCLIGDGMVSQGTMIVKGNAKKIRRLKDNILM 80 GFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRTDRYLRHLEAVLIVADKDVLLEVTGNGDVLEPSGNVLGTGS 160 GGPYAIAAARALYDVENLSAKDIAYKAMNIAADMCCHTNNNFICETL 240 ................................................................................ 80 ................................................................................ 160 ............................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1452800 4 ---MFVR|HL 0.116 . PcyM_1452800 11 HLSGLIR|AP 0.110 . PcyM_1452800 18 APPAIGR|AA 0.096 . PcyM_1452800 22 IGRAAQR|NY 0.090 . PcyM_1452800 30 YFAPTGR|LL 0.083 . PcyM_1452800 35 GRLLPPR|HG 0.113 . PcyM_1452800 44 TTILCVR|KN 0.077 . PcyM_1452800 45 TILCVRK|NN 0.087 . PcyM_1452800 65 QGTMIVK|GN 0.066 . PcyM_1452800 69 IVKGNAK|KI 0.065 . PcyM_1452800 70 VKGNAKK|IR 0.080 . PcyM_1452800 72 GNAKKIR|RL 0.152 . PcyM_1452800 73 NAKKIRR|LK 0.171 . PcyM_1452800 75 KKIRRLK|DN 0.167 . PcyM_1452800 95 CFTLLDK|FE 0.058 . PcyM_1452800 99 LDKFETK|ID 0.060 . PcyM_1452800 109 YPNQLLR|SC 0.099 . PcyM_1452800 116 SCVELAK|LW 0.062 . PcyM_1452800 119 ELAKLWR|TD 0.085 . PcyM_1452800 122 KLWRTDR|YL 0.320 . PcyM_1452800 125 RTDRYLR|HL 0.285 . PcyM_1452800 136 VLIVADK|DV 0.076 . PcyM_1452800 170 YAIAAAR|AL 0.129 . PcyM_1452800 181 VENLSAK|DI 0.083 . PcyM_1452800 186 AKDIAYK|AM 0.067 . ____________________________^_________________

  • Fasta :-

    >PcyM_1452800 ATGTTTGTAAGGCACCTCTCAGGCTTGATTAGGGCTCCCCCGGCGATCGGCCGAGCGGCA CAGAGAAACTACTTCGCCCCCACGGGAAGGCTCCTCCCTCCGCGACATGGCACGACCATA CTGTGCGTGCGCAAGAACAACGAAGTGTGTCTAATCGGAGATGGTATGGTCTCTCAAGGA ACAATGATCGTCAAAGGGAACGCAAAAAAAATAAGGAGGCTGAAGGACAACATTTTGATG GGGTTCGCGGGGGCGACGGCGGACTGCTTCACCCTGCTGGACAAGTTTGAAACGAAAATC GACGAATACCCAAATCAGCTTCTCCGCAGCTGTGTCGAACTAGCCAAACTATGGAGAACC GACAGGTACTTGCGACATCTGGAGGCAGTCCTAATAGTGGCGGACAAAGATGTACTGTTG GAGGTAACTGGTAACGGAGACGTTTTGGAACCTTCTGGAAATGTCTTGGGCACAGGGTCG GGGGGACCATATGCCATAGCAGCAGCCAGGGCACTCTACGACGTGGAGAATCTCAGCGCC AAGGACATCGCCTACAAAGCAATGAACATTGCTGCGGACATGTGTTGCCACACGAACAAC AATTTTATATGCGAAACGCTTTGA
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  • Fasta :-

    MFVRHLSGLIRAPPAIGRAAQRNYFAPTGRLLPPRHGTTILCVRKNNEVCLIGDGMVSQG TMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRT DRYLRHLEAVLIVADKDVLLEVTGNGDVLEPSGNVLGTGSGGPYAIAAARALYDVENLSA KDIAYKAMNIAADMCCHTNNNFICETL

  • title: active site
  • coordinates: T38,D54,M56,K70,S160
No Results
No Results
IDSitePeptideScoreMethod
PcyM_1452800179 SVENLSAKDI0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India