SPAC1071.04c | signal peptidase subunit Spc2 (predicted)

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  • Fasta :-

    >SPAC1071.04c MPKYNVSDFKSKFDKELTNHFNKNGYKQSFVFEDIRLLIAIACIIPAGLAFGIEYVYGFG VLKSYLKYLLPLYFLASCLLTFWSSVVKGSTVYVATKKERHIKISADTFLPLKNKPLITT KFTVLKNRNAVQLEWSVPVAHIFEEDGQISSATFEAEISKYLSQIEN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/151 Sequence name : 151 Sequence length : 167 VALUES OF COMPUTED PARAMETERS Coef20 : 3.149 CoefTot : -0.545 ChDiff : 5 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.224 2.588 0.582 0.903 MesoH : 0.547 1.112 -0.026 0.464 MuHd_075 : 3.977 2.688 1.515 1.418 MuHd_095 : 24.168 18.090 5.843 6.443 MuHd_100 : 16.016 15.243 4.398 4.831 MuHd_105 : 10.171 12.331 3.633 3.142 Hmax_075 : -6.300 -0.000 -4.066 1.310 Hmax_095 : 2.625 6.037 -2.229 3.360 Hmax_100 : -0.400 5.000 -2.683 3.200 Hmax_105 : -1.300 2.567 -2.251 1.610 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9549 0.0451 DFMC : 0.9852 0.0148
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 167 SPAC1071.04c MPKYNVSDFKSKFDKELTNHFNKNGYKQSFVFEDIRLLIAIACIIPAGLAFGIEYVYGFGVLKSYLKYLLPLYFLASCLL 80 TFWSSVVKGSTVYVATKKERHIKISADTFLPLKNKPLITTKFTVLKNRNAVQLEWSVPVAHIFEEDGQISSATFEAEISK 160 YLSQIEN 240 ................................................................................ 80 ................................................................................ 160 ....... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC1071.04c 3 ----MPK|YN 0.066 . SPAC1071.04c 10 YNVSDFK|SK 0.108 . SPAC1071.04c 12 VSDFKSK|FD 0.072 . SPAC1071.04c 15 FKSKFDK|EL 0.081 . SPAC1071.04c 23 LTNHFNK|NG 0.069 . SPAC1071.04c 27 FNKNGYK|QS 0.067 . SPAC1071.04c 36 FVFEDIR|LL 0.074 . SPAC1071.04c 63 YGFGVLK|SY 0.068 . SPAC1071.04c 67 VLKSYLK|YL 0.057 . SPAC1071.04c 88 FWSSVVK|GS 0.074 . SPAC1071.04c 97 TVYVATK|KE 0.062 . SPAC1071.04c 98 VYVATKK|ER 0.086 . SPAC1071.04c 100 VATKKER|HI 0.118 . SPAC1071.04c 103 KKERHIK|IS 0.149 . SPAC1071.04c 113 DTFLPLK|NK 0.052 . SPAC1071.04c 115 FLPLKNK|PL 0.064 . SPAC1071.04c 121 KPLITTK|FT 0.063 . SPAC1071.04c 126 TKFTVLK|NR 0.068 . SPAC1071.04c 128 FTVLKNR|NA 0.122 . SPAC1071.04c 160 FEAEISK|YL 0.088 . ____________________________^_________________

  • Fasta :-

    >SPAC1071.04c ATGCCAAAATATAACGTTTCAGATTTCAAATCTAAATTTGATAAAGAATTAACAAACCAT TTTAACAAAAATGGTTATAAGCAATCCTTTGTATTTGAAGATATTCGTTTGCTGATCGCA ATAGCTTGCATTATACCCGCCGGCCTCGCATTTGGCATTGAGTATGTTTATGGTTTTGGT GTTTTAAAATCTTACTTAAAGTATCTTTTACCTTTATATTTCCTAGCTTCCTGCTTGCTC ACATTTTGGTCTTCTGTAGTCAAGGGTAGTACTGTTTATGTTGCTACGAAAAAAGAAAGA CACATCAAAATTTCTGCGGATACCTTTTTACCTTTGAAAAATAAGCCTCTAATCACTACT AAATTTACCGTACTCAAAAACAGAAATGCTGTTCAACTTGAATGGTCGGTTCCTGTTGCT CACATTTTTGAAGAAGATGGCCAAATATCAAGTGCAACTTTTGAGGCGGAAATTTCAAAG TACTTGTCTCAAATTGAAAACTGA
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IDSitePeptideScoreMethod
SPAC1071.04c163 SSKYLSQIEN0.995unsp

SPAC1071.04c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India