SPAC11D3.13 | ThiJ domain protein

_IDPredictionOTHERSPmTPCS_Position
SPAC11D3.13OTHER0.9282040.0006800.071116
No Results

  • Fasta :-

    >SPAC11D3.13 MVLFMKTVQRPEHISLKSCIPFKSLQRQGIVFRLSVRMVMLADDHSISDSALSDSDKNAF KDKNNDFWKAIKNAKNASDINFSDYSIFFAAGGHGTLFDFPSATNLHKGAAKIYSMGGVI AAVCHGPVILPCIKDSTGFSIVKGKTVTAFNEIAEQQMNLMPTFEKYHFKTLNKLFQEAG SNFVDPQEPFDDFVKTDGKLVTGANPASAASTAKAALNSLNS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/863 Sequence name : 863 Sequence length : 222 VALUES OF COMPUTED PARAMETERS Coef20 : 4.237 CoefTot : -0.293 ChDiff : 3 ZoneTo : 42 KR : 7 DE : 1 CleavSite : 35 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.588 1.818 0.426 0.688 MesoH : 0.211 0.542 -0.190 0.339 MuHd_075 : 47.971 27.310 13.849 10.938 MuHd_095 : 33.345 21.536 11.656 7.493 MuHd_100 : 35.923 17.664 10.850 7.325 MuHd_105 : 44.627 18.589 10.446 9.361 Hmax_075 : 16.300 17.000 4.293 5.640 Hmax_095 : 11.000 13.475 2.432 4.209 Hmax_100 : 12.000 10.900 2.182 4.770 Hmax_105 : 12.700 12.600 0.979 4.506 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0807 0.9193 DFMC : 0.1418 0.8582 This protein is probably imported in mitochondria. f(Ser) = 0.0952 f(Arg) = 0.0952 CMi = 0.46838 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 222 SPAC11D3.13 MVLFMKTVQRPEHISLKSCIPFKSLQRQGIVFRLSVRMVMLADDHSISDSALSDSDKNAFKDKNNDFWKAIKNAKNASDI 80 NFSDYSIFFAAGGHGTLFDFPSATNLHKGAAKIYSMGGVIAAVCHGPVILPCIKDSTGFSIVKGKTVTAFNEIAEQQMNL 160 MPTFEKYHFKTLNKLFQEAGSNFVDPQEPFDDFVKTDGKLVTGANPASAASTAKAALNSLNS 240 ................................................................................ 80 ................................................................................ 160 .............................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC11D3.13 6 -MVLFMK|TV 0.075 . SPAC11D3.13 10 FMKTVQR|PE 0.103 . SPAC11D3.13 17 PEHISLK|SC 0.077 . SPAC11D3.13 23 KSCIPFK|SL 0.104 . SPAC11D3.13 27 PFKSLQR|QG 0.068 . SPAC11D3.13 33 RQGIVFR|LS 0.082 . SPAC11D3.13 37 VFRLSVR|MV 0.114 . SPAC11D3.13 57 ALSDSDK|NA 0.077 . SPAC11D3.13 61 SDKNAFK|DK 0.068 . SPAC11D3.13 63 KNAFKDK|NN 0.072 . SPAC11D3.13 69 KNNDFWK|AI 0.084 . SPAC11D3.13 72 DFWKAIK|NA 0.059 . SPAC11D3.13 75 KAIKNAK|NA 0.094 . SPAC11D3.13 108 SATNLHK|GA 0.081 . SPAC11D3.13 112 LHKGAAK|IY 0.077 . SPAC11D3.13 134 VILPCIK|DS 0.056 . SPAC11D3.13 143 TGFSIVK|GK 0.061 . SPAC11D3.13 145 FSIVKGK|TV 0.089 . SPAC11D3.13 166 LMPTFEK|YH 0.066 . SPAC11D3.13 170 FEKYHFK|TL 0.072 . SPAC11D3.13 174 HFKTLNK|LF 0.061 . SPAC11D3.13 195 PFDDFVK|TD 0.061 . SPAC11D3.13 199 FVKTDGK|LV 0.069 . SPAC11D3.13 214 SAASTAK|AA 0.094 . ____________________________^_________________

  • Fasta :-

    >SPAC11D3.13 TGAATGTCAAAATAAAATTTCTAGATTCATCGATTACTAATCTCTACAATATATATATTA TAATTTTCATACACAAAATTATGCTGGAATTTTATACTTACATTTACCTATCGATTTAAC ACATTAAATCCTCAAAACATGTCTACCGAAAAAAAAGTTCTACTAGTTTGCAGCGATTAT TATGGTCCTTTTTATGAAGACAGTTCAAAGACCGGAGCATATTTCACTGAAGTCTTGCAT CCCTTTCAAGTCTTTACAAAGGCAGGGTATAGTGTTCAGATTGTCAGTGAGAATGGTAAT GTTGGCTGATGACCATTCTATAAGTGATTCTGCCCTTTCGGACTCCGATAAAAACGCGTT TAAAGACAAAAACAATGATTTTTGGAAAGCTATTAAAAATGCGAAGAATGCAAGCGACAT AAATTTCTCGGACTATTCTATATTTTTTGCTGCTGGTGGACATGGCACCTTGTTTGATTT CCCATCTGCAACCAATTTACACAAGGGAGCTGCTAAGATTTACAGTATGGGTGGAGTGAT TGCAGCCGTTTGCCATGGTCCAGTTATTCTTCCGTGTATCAAAGATTCTACAGGATTTTC TATTGTTAAGGGGAAAACGGTTACAGCTTTCAATGAAATCGCTGAGCAGCAAATGAATTT AATGCCTACTTTTGAAAAATACCATTTTAAGACATTAAACAAGTTATTTCAGGAAGCAGG AAGCAACTTCGTTGATCCTCAAGAACCTTTTGATGATTTTGTTAAAACAGATGGCAAATT AGTTACCGGTGCTAACCCAGCAAGTGCCGCTTCAACAGCGAAAGCAGCTTTGAACTCTTT AAATTCTTAAAGTTTGTAGTAGGATTTGTGTTCATAATGCCTTGCGACAATATACATGTT ACGACTACTATTTGTTATTCACATTCATAGGGTTTACATAACATCCATAACAAATGAAAC TCTAAACGCATTTTCTATTACTAAATTAGAAAATTTTTAAAAAATTATATTTATTACTTT CTATGAATCAAAGTAAATAAGAAGTGAAATAAAAGTGTTTCAAAATTTCGACGTTAAGAA CGAACAAATATCGATTAGGAAGGCCAAGAAGAGTCTATATT
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  • Fasta :-

    MVLFMKTVQRPEHISLKSCIPFKSLQRQGIVFRLSVRMVMLADDHSISDSALSDSDKNAF KDKNNDFWKAIKNAKNASDINFSDYSIFFAAGGHGTLFDFPSATNLHKGAAKIYSMGGVI AAVCHGPVILPCIKDSTGFSIVKGKTVTAFNEIAEQQMNLMPTFEKYHFKTLNKLFQEAG SNFVDPQEPFDDFVKTDGKLVTGANPASAASTAKAALNSLNS

  • title: conserved cys residue
  • coordinates: C124
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
SPAC11D3.13S2220.5220.022SPAC11D3.13S2190.5010.042
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
SPAC11D3.13S2220.5220.022SPAC11D3.13S2190.5010.042
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPAC11D3.1355 SALSDSDKNA0.993unspSPAC11D3.1355 SALSDSDKNA0.993unspSPAC11D3.1355 SALSDSDKNA0.993unspSPAC11D3.1346 SADDHSISDS0.992unspSPAC11D3.1353 SDSALSDSDK0.993unsp

SPAC11D3.13      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India