SPAC12B10.12c | DNA repair protein Rhp41

_IDPredictionOTHERSPmTPCS_Position
SPAC12B10.12cOTHER0.9999560.0000030.000041
No Results

  • Fasta :-

    >SPAC12B10.12c MMSDEDNTYSDDEEWLDLDLGLPNNDIKTAPILNSSLLSSAVHGERLIQERPTHDFGDVE ATVDRTVEKRSRLKITSVDRKIRLQIHQLHLLCLTYHLCTRNTWCDDNRLNYLVKYIPPG IRVSLHPSSQKSQMIRNKTFLHGLAGLVEVWKRKYKITTNGLRKPNYGLLQNNSLISESL SLEEFCKNSKLLSGSRDYGTQLFASILRNLNVPTRLVFSLQVLSFRFKGAINEASSHEIV PAWSQQMENDSSSDISESAHITSRFRKRRKIIQPSFSNLSHLDASDIVTEDTKLKVIDSP KPVFWVEAFNKAMQKWVCVDPFGDASVIGKYRRFEPASSDHLNQMTYVFAIEANGYVKDV TRKYCLHYYKILKNRVEIFPFGKAWMNRIFSKIGKPRDFYNDMDAIEDAELLRLEQSEGI PRNIQDLKDHPLFVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRKYVSNGFSAEHWYR KGRIIKPGAQPLKHVKNGDKVLPLYDEEATQLYTPKPVVANIVPKNAYGNIDLYVPSMLP YGAYHCRKRCALAAAKFLEIDYAKAVVGFDFQRKYSKPKLEGVVVSKRYEEAIDLIAEEI DQEEKEAEARNVRKTCLLLWKRLITGLRIRQRVFEEYG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/750 Sequence name : 750 Sequence length : 638 VALUES OF COMPUTED PARAMETERS Coef20 : 2.809 CoefTot : 0.112 ChDiff : 19 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.494 1.059 -0.123 0.394 MesoH : -0.885 0.118 -0.461 0.149 MuHd_075 : 7.653 3.736 0.867 1.530 MuHd_095 : 7.163 2.640 1.449 1.076 MuHd_100 : 12.595 7.288 2.434 2.821 MuHd_105 : 18.350 9.865 3.972 3.834 Hmax_075 : -13.067 -6.300 -6.037 0.058 Hmax_095 : -16.300 -6.400 -6.758 -0.040 Hmax_100 : -7.300 -1.400 -4.319 1.120 Hmax_105 : -8.200 -3.967 -4.610 1.365 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9966 0.0034 DFMC : 0.9926 0.0074
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 638 SPAC12B10.12c MMSDEDNTYSDDEEWLDLDLGLPNNDIKTAPILNSSLLSSAVHGERLIQERPTHDFGDVEATVDRTVEKRSRLKITSVDR 80 KIRLQIHQLHLLCLTYHLCTRNTWCDDNRLNYLVKYIPPGIRVSLHPSSQKSQMIRNKTFLHGLAGLVEVWKRKYKITTN 160 GLRKPNYGLLQNNSLISESLSLEEFCKNSKLLSGSRDYGTQLFASILRNLNVPTRLVFSLQVLSFRFKGAINEASSHEIV 240 PAWSQQMENDSSSDISESAHITSRFRKRRKIIQPSFSNLSHLDASDIVTEDTKLKVIDSPKPVFWVEAFNKAMQKWVCVD 320 PFGDASVIGKYRRFEPASSDHLNQMTYVFAIEANGYVKDVTRKYCLHYYKILKNRVEIFPFGKAWMNRIFSKIGKPRDFY 400 NDMDAIEDAELLRLEQSEGIPRNIQDLKDHPLFVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRKYVSNGFSAEHWYR 480 KGRIIKPGAQPLKHVKNGDKVLPLYDEEATQLYTPKPVVANIVPKNAYGNIDLYVPSMLPYGAYHCRKRCALAAAKFLEI 560 DYAKAVVGFDFQRKYSKPKLEGVVVSKRYEEAIDLIAEEIDQEEKEAEARNVRKTCLLLWKRLITGLRIRQRVFEEYG 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................P................................................... 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .............................................................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ SPAC12B10.12c 28 LPNNDIK|TA 0.071 . SPAC12B10.12c 46 SAVHGER|LI 0.082 . SPAC12B10.12c 51 ERLIQER|PT 0.121 . SPAC12B10.12c 65 VEATVDR|TV 0.112 . SPAC12B10.12c 69 VDRTVEK|RS 0.064 . SPAC12B10.12c 70 DRTVEKR|SR 0.256 . SPAC12B10.12c 72 TVEKRSR|LK 0.085 . SPAC12B10.12c 74 EKRSRLK|IT 0.067 . SPAC12B10.12c 80 KITSVDR|KI 0.096 . SPAC12B10.12c 81 ITSVDRK|IR 0.085 . SPAC12B10.12c 83 SVDRKIR|LQ 0.271 . SPAC12B10.12c 101 TYHLCTR|NT 0.081 . SPAC12B10.12c 109 TWCDDNR|LN 0.079 . SPAC12B10.12c 115 RLNYLVK|YI 0.100 . SPAC12B10.12c 122 YIPPGIR|VS 0.059 . SPAC12B10.12c 131 LHPSSQK|SQ 0.075 . SPAC12B10.12c 136 QKSQMIR|NK 0.091 . SPAC12B10.12c 138 SQMIRNK|TF 0.076 . SPAC12B10.12c 152 GLVEVWK|RK 0.065 . SPAC12B10.12c 153 LVEVWKR|KY 0.149 . SPAC12B10.12c 154 VEVWKRK|YK 0.089 . SPAC12B10.12c 156 VWKRKYK|IT 0.193 . SPAC12B10.12c 163 ITTNGLR|KP 0.078 . SPAC12B10.12c 164 TTNGLRK|PN 0.087 . SPAC12B10.12c 187 SLEEFCK|NS 0.056 . SPAC12B10.12c 190 EFCKNSK|LL 0.062 . SPAC12B10.12c 196 KLLSGSR|DY 0.126 . SPAC12B10.12c 208 LFASILR|NL 0.071 . SPAC12B10.12c 215 NLNVPTR|LV 0.121 . SPAC12B10.12c 226 LQVLSFR|FK 0.130 . SPAC12B10.12c 228 VLSFRFK|GA 0.086 . SPAC12B10.12c 264 SAHITSR|FR 0.080 . SPAC12B10.12c 266 HITSRFR|KR 0.074 . SPAC12B10.12c 267 ITSRFRK|RR 0.339 . SPAC12B10.12c 268 TSRFRKR|RK 0.250 . SPAC12B10.12c 269 SRFRKRR|KI 0.636 *ProP* SPAC12B10.12c 270 RFRKRRK|II 0.114 . SPAC12B10.12c 293 IVTEDTK|LK 0.051 . SPAC12B10.12c 295 TEDTKLK|VI 0.065 . SPAC12B10.12c 301 KVIDSPK|PV 0.095 . SPAC12B10.12c 311 WVEAFNK|AM 0.062 . SPAC12B10.12c 315 FNKAMQK|WV 0.078 . SPAC12B10.12c 330 DASVIGK|YR 0.072 . SPAC12B10.12c 332 SVIGKYR|RF 0.099 . SPAC12B10.12c 333 VIGKYRR|FE 0.150 . SPAC12B10.12c 358 EANGYVK|DV 0.087 . SPAC12B10.12c 362 YVKDVTR|KY 0.075 . SPAC12B10.12c 363 VKDVTRK|YC 0.080 . SPAC12B10.12c 370 YCLHYYK|IL 0.060 . SPAC12B10.12c 373 HYYKILK|NR 0.057 . SPAC12B10.12c 375 YKILKNR|VE 0.075 . SPAC12B10.12c 383 EIFPFGK|AW 0.064 . SPAC12B10.12c 388 GKAWMNR|IF 0.153 . SPAC12B10.12c 392 MNRIFSK|IG 0.067 . SPAC12B10.12c 395 IFSKIGK|PR 0.072 . SPAC12B10.12c 397 SKIGKPR|DF 0.146 . SPAC12B10.12c 413 EDAELLR|LE 0.069 . SPAC12B10.12c 422 QSEGIPR|NI 0.090 . SPAC12B10.12c 428 RNIQDLK|DH 0.059 . SPAC12B10.12c 437 PLFVLER|HL 0.092 . SPAC12B10.12c 440 VLERHLK|KN 0.121 . SPAC12B10.12c 441 LERHLKK|NQ 0.099 . SPAC12B10.12c 446 KKNQAIK|TG 0.066 . SPAC12B10.12c 449 QAIKTGK|SC 0.097 . SPAC12B10.12c 453 TGKSCGR|IN 0.102 . SPAC12B10.12c 457 CGRINTK|NG 0.054 . SPAC12B10.12c 466 VELVYPR|KY 0.074 . SPAC12B10.12c 467 ELVYPRK|YV 0.147 . SPAC12B10.12c 480 SAEHWYR|KG 0.093 . SPAC12B10.12c 481 AEHWYRK|GR 0.094 . SPAC12B10.12c 483 HWYRKGR|II 0.418 . SPAC12B10.12c 486 RKGRIIK|PG 0.147 . SPAC12B10.12c 493 PGAQPLK|HV 0.082 . SPAC12B10.12c 496 QPLKHVK|NG 0.073 . SPAC12B10.12c 500 HVKNGDK|VL 0.055 . SPAC12B10.12c 516 TQLYTPK|PV 0.081 . SPAC12B10.12c 525 VANIVPK|NA 0.083 . SPAC12B10.12c 547 YGAYHCR|KR 0.092 . SPAC12B10.12c 548 GAYHCRK|RC 0.075 . SPAC12B10.12c 549 AYHCRKR|CA 0.252 . SPAC12B10.12c 556 CALAAAK|FL 0.064 . SPAC12B10.12c 564 LEIDYAK|AV 0.074 . SPAC12B10.12c 573 VGFDFQR|KY 0.081 . SPAC12B10.12c 574 GFDFQRK|YS 0.114 . SPAC12B10.12c 577 FQRKYSK|PK 0.065 . SPAC12B10.12c 579 RKYSKPK|LE 0.076 . SPAC12B10.12c 587 EGVVVSK|RY 0.068 . SPAC12B10.12c 588 GVVVSKR|YE 0.199 . SPAC12B10.12c 605 EIDQEEK|EA 0.060 . SPAC12B10.12c 610 EKEAEAR|NV 0.113 . SPAC12B10.12c 613 AEARNVR|KT 0.175 . SPAC12B10.12c 614 EARNVRK|TC 0.071 . SPAC12B10.12c 621 TCLLLWK|RL 0.066 . SPAC12B10.12c 622 CLLLWKR|LI 0.111 . SPAC12B10.12c 628 RLITGLR|IR 0.074 . SPAC12B10.12c 630 ITGLRIR|QR 0.076 . SPAC12B10.12c 632 GLRIRQR|VF 0.110 . ____________________________^_________________

  • Fasta :-

    >SPAC12B10.12c AACGCTGTATATAAACAAATTCAACGTTAGCTATGATTTTAATAGAAAAGGAATTTGTTT TTCTTAACGTTATGAACTACTTTTCGTATCAATAAATACAAATCTTTTTCTCATGTGTTA CGTGCATTATTAATGGTCAAAACATTTTCTTATATTCTACTTAATTGAAGTATCTTTATA AACTCGTGCTCCCTAGTGTTTTTAAAGAGTTACGCATCTCAAAAACGTTTCATTGGTTTT TTATGTTTCATTTTTTAAAATAATATAATAGAATAAGGGCGCAACGAGTCTTAATACTGA AAAAAGTTGGCTTCTATCAAATATAAATGCTATGATGAGTGACGAAGATAATACCTATAG TGATGATGAAGAATGGTTAGATTTAGATCTTGGTCTCCCTAATAATGATATTAAAACTGC ACCTATTTTAAATTCTTCGCTCCTTTCATCCGCCGTACATGGTGAAAGGTTGATTCAAGA ACGACCAACTCATGATTTTGGAGACGTTGAGGCCACCGTTGATCGAACGGTTGAAAAACG TAGCCGCTTAAAGATCACTTCCGTTGATAGAAAGATTCGTCTTCAAATTCATCAGTTACA CTTACTCTGTTTGACTTATCATCTTTGCACACGAAACACTTGGTGCGATGACAATAGACT AAATTATCTTGTGAAATATATTCCTCCTGGTATACGTGTCTCGCTTCATCCCTCTTCTCA AAAGTCACAAATGATTCGGAACAAAACTTTCCTACACGGGTTGGCTGGACTCGTCGAAGT TTGGAAACGGAAATATAAAATCACTACCAATGGATTAAGAAAACCGAATTATGGTTTACT ACAAAACAATAGCCTCATCTCTGAATCTTTATCCCTTGAGGAGTTTTGTAAAAACTCAAA ATTGCTTTCCGGTAGTAGAGATTATGGAACCCAGTTATTTGCATCTATTCTTCGTAATTT AAACGTTCCAACTAGACTAGTTTTTTCACTACAAGTTTTATCTTTTCGATTTAAAGGTGC CATAAATGAAGCAAGTAGTCATGAAATTGTTCCGGCATGGTCTCAGCAAATGGAAAATGA TTCATCTAGCGATATCTCTGAAAGTGCACACATTACTTCTAGATTTCGCAAACGTAGGAA AATCATACAGCCTTCTTTTTCAAATCTTTCACATCTTGATGCCTCAGATATTGTTACAGA AGATACAAAACTAAAGGTAATTGATTCTCCCAAACCGGTTTTTTGGGTAGAGGCTTTTAA TAAAGCTATGCAAAAATGGGTTTGTGTTGATCCATTTGGTGATGCTAGTGTCATTGGCAA GTACAGAAGGTTTGAACCGGCTTCCAGTGACCATCTAAATCAAATGACTTATGTATTTGC TATTGAGGCTAATGGGTATGTAAAAGATGTTACCCGAAAATATTGTTTACATTATTATAA AATATTAAAGAATAGAGTCGAGATTTTTCCCTTTGGAAAGGCTTGGATGAATAGAATATT TTCTAAAATTGGAAAACCAAGGGATTTTTATAATGACATGGATGCTATAGAGGATGCGGA ATTACTAAGGCTTGAACAATCAGAAGGAATTCCGAGGAATATTCAAGATTTGAAAGATCA CCCGCTTTTTGTTTTGGAGAGGCATTTAAAAAAGAACCAGGCTATTAAAACTGGTAAATC CTGTGGAAGAATCAACACAAAAAATGGGGTCGAATTAGTGTATCCACGCAAATATGTTAG CAACGGCTTCTCTGCTGAACATTGGTATCGTAAGGGTCGTATCATAAAGCCAGGAGCTCA GCCTTTAAAACATGTTAAGAATGGAGATAAAGTATTACCCTTGTATGATGAAGAAGCTAC GCAGTTGTACACTCCGAAACCGGTTGTTGCGAACATTGTTCCTAAAAATGCATACGGAAA CATCGATTTATATGTCCCTTCAATGTTGCCATATGGAGCATATCATTGTAGAAAACGTTG TGCTTTGGCAGCAGCTAAATTTTTAGAGATTGACTATGCAAAAGCAGTTGTTGGATTTGA TTTTCAACGGAAGTACTCAAAGCCTAAATTAGAGGGAGTTGTTGTTTCTAAGCGTTATGA AGAGGCTATCGATCTCATTGCAGAGGAGATAGACCAGGAAGAAAAAGAAGCAGAGGCAAG GAATGTAAGAAAGACTTGTCTTTTATTATGGAAGCGACTGATTACAGGCCTTCGGATTCG TCAGCGTGTATTCGAAGAATACGGTTAATTGATAAATTCGATTTTCCTAATCTACGAGCT CAATGATGGAATCATTTTACAAAGTACCTGGCTACACATTCTTAGTGTTATCTACATCAA GGTTGTTATTTATTTTTTATTGTAATACGAAGTTTGAATTGTTATCATATATTTCTTTGT ATATATATATTAGTACACAAATAAAGATGAGCGATCATGACTTTAAAATTCTATAGAATT CAGGGGTCTTTAATAAGTACCTTTATATTGACATAAATTAAAATAAAAGATTGATATTAT C
  • Download Fasta

  • Fasta :-

    MMSDEDNTYSDDEEWLDLDLGLPNNDIKTAPILNSSLLSSAVHGERLIQERPTHDFGDVE ATVDRTVEKRSRLKITSVDRKIRLQIHQLHLLCLTYHLCTRNTWCDDNRLNYLVKYIPPG IRVSLHPSSQKSQMIRNKTFLHGLAGLVEVWKRKYKITTNGLRKPNYGLLQNNSLISESL SLEEFCKNSKLLSGSRDYGTQLFASILRNLNVPTRLVFSLQVLSFRFKGAINEASSHEIV PAWSQQMENDSSSDISESAHITSRFRKRRKIIQPSFSNLSHLDASDIVTEDTKLKVIDSP KPVFWVEAFNKAMQKWVCVDPFGDASVIGKYRRFEPASSDHLNQMTYVFAIEANGYVKDV TRKYCLHYYKILKNRVEIFPFGKAWMNRIFSKIGKPRDFYNDMDAIEDAELLRLEQSEGI PRNIQDLKDHPLFVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRKYVSNGFSAEHWYR KGRIIKPGAQPLKHVKNGDKVLPLYDEEATQLYTPKPVVANIVPKNAYGNIDLYVPSMLP YGAYHCRKRCALAAAKFLEIDYAKAVVGFDFQRKYSKPKLEGVVVSKRYEEAIDLIAEEI DQEEKEAEARNVRKTCLLLWKRLITGLRIRQRVFEEYG

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPAC12B10.12c129 SLHPSSQKSQ0.993unspSPAC12B10.12c181 SSESLSLEEF0.997unsp

SPAC12B10.12c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India