SPAC23H4.09 | curved DNA-binding protein Cdb4, peptidase family

_IDPredictionOTHERSPmTPCS_Position
SPAC23H4.09OTHER0.9999760.0000210.000003
No Results

  • Fasta :-

    >SPAC23H4.09 MSTKEATSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELL NEAIKKVYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHID GFASLVATTTVVSEEPVTGPAADVIAAASAALKAAQRTIKPGNTNWQVTDIVDKIATSYG CKPVAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVSTSPSGKV KRSDIATRIYKKTDTTYMLKLQASRKVYSEIQTKFGPFPFSTRNISFDSRTNMGLNECTS HKLLFPYEVLLDKDGGIVAEFYSTIALTKKGTIILSDSEPKEDFIKSDKKVEDPEIVALL ETPIKVTKNKKKSKKPSKANE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/101 Sequence name : 101 Sequence length : 381 VALUES OF COMPUTED PARAMETERS Coef20 : 3.633 CoefTot : -0.001 ChDiff : 2 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.088 1.600 0.098 0.578 MesoH : -0.181 0.576 -0.276 0.300 MuHd_075 : 40.652 24.339 11.118 6.569 MuHd_095 : 15.514 8.279 3.503 0.997 MuHd_100 : 7.398 7.030 0.992 1.313 MuHd_105 : 4.249 6.567 1.979 1.632 Hmax_075 : 12.600 9.800 1.557 3.211 Hmax_095 : 2.800 6.200 -1.487 1.600 Hmax_100 : 0.300 1.300 -2.475 1.000 Hmax_105 : -2.100 2.333 -1.981 1.353 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9007 0.0993 DFMC : 0.8697 0.1303
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 381 SPAC23H4.09 MSTKEATSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKKVYRTKDAYKGIAFP 80 TAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGPAADVIAAASAALKAAQRTIK 160 PGNTNWQVTDIVDKIATSYGCKPVAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVSTSPSGKV 240 KRSDIATRIYKKTDTTYMLKLQASRKVYSEIQTKFGPFPFSTRNISFDSRTNMGLNECTSHKLLFPYEVLLDKDGGIVAE 320 FYSTIALTKKGTIILSDSEPKEDFIKSDKKVEDPEIVALLETPIKVTKNKKKSKKPSKANE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC23H4.09 4 ---MSTK|EA 0.071 . SPAC23H4.09 24 NPETVNK|YK 0.085 . SPAC23H4.09 26 ETVNKYK|IA 0.086 . SPAC23H4.09 37 VSQNVIK|KV 0.067 . SPAC23H4.09 38 SQNVIKK|VV 0.225 . SPAC23H4.09 48 LCQPGAK|IY 0.066 . SPAC23H4.09 55 IYDICVR|GD 0.085 . SPAC23H4.09 65 LLNEAIK|KV 0.071 . SPAC23H4.09 66 LNEAIKK|VY 0.095 . SPAC23H4.09 69 AIKKVYR|TK 0.104 . SPAC23H4.09 71 KKVYRTK|DA 0.108 . SPAC23H4.09 75 RTKDAYK|GI 0.064 . SPAC23H4.09 96 AHLSPLK|SD 0.062 . SPAC23H4.09 106 EANLALK|SG 0.073 . SPAC23H4.09 112 KSGDVVK|IL 0.067 . SPAC23H4.09 153 AASAALK|AA 0.072 . SPAC23H4.09 157 ALKAAQR|TI 0.101 . SPAC23H4.09 160 AAQRTIK|PG 0.112 . SPAC23H4.09 174 VTDIVDK|IA 0.063 . SPAC23H4.09 182 ATSYGCK|PV 0.083 . SPAC23H4.09 194 LSHQQER|EV 0.208 . SPAC23H4.09 200 REVIDGK|KQ 0.056 . SPAC23H4.09 201 EVIDGKK|QV 0.102 . SPAC23H4.09 212 NPSDSQR|SE 0.215 . SPAC23H4.09 239 STSPSGK|VK 0.066 . SPAC23H4.09 241 SPSGKVK|RS 0.091 . SPAC23H4.09 242 PSGKVKR|SD 0.422 . SPAC23H4.09 248 RSDIATR|IY 0.098 . SPAC23H4.09 251 IATRIYK|KT 0.128 . SPAC23H4.09 252 ATRIYKK|TD 0.087 . SPAC23H4.09 260 DTTYMLK|LQ 0.051 . SPAC23H4.09 265 LKLQASR|KV 0.102 . SPAC23H4.09 266 KLQASRK|VY 0.106 . SPAC23H4.09 274 YSEIQTK|FG 0.058 . SPAC23H4.09 283 PFPFSTR|NI 0.080 . SPAC23H4.09 290 NISFDSR|TN 0.087 . SPAC23H4.09 302 NECTSHK|LL 0.069 . SPAC23H4.09 313 YEVLLDK|DG 0.068 . SPAC23H4.09 329 STIALTK|KG 0.065 . SPAC23H4.09 330 TIALTKK|GT 0.116 . SPAC23H4.09 341 LSDSEPK|ED 0.059 . SPAC23H4.09 346 PKEDFIK|SD 0.089 . SPAC23H4.09 349 DFIKSDK|KV 0.076 . SPAC23H4.09 350 FIKSDKK|VE 0.092 . SPAC23H4.09 365 LLETPIK|VT 0.060 . SPAC23H4.09 368 TPIKVTK|NK 0.070 . SPAC23H4.09 370 IKVTKNK|KK 0.078 . SPAC23H4.09 371 KVTKNKK|KS 0.074 . SPAC23H4.09 372 VTKNKKK|SK 0.191 . SPAC23H4.09 374 KNKKKSK|KP 0.083 . SPAC23H4.09 375 NKKKSKK|PS 0.158 . SPAC23H4.09 378 KSKKPSK|AN 0.080 . ____________________________^_________________

  • Fasta :-

    >SPAC23H4.09 TCAATATGAGCCATGTTATTCATGAGTTTGGAGTCCACAATTTTGTGACTTGCAAAATCC TAGCACCAAGTTCTTGAATTTGTAGCCAGATTTAGCTACATCATAGACAATATGTCGACT AAAGAAGCAACTTCAGAGACTGCTGTCGATTATTCTTTGAGTAATCCTGAAACCGTCAAT AAATATAAAATTGCAGGCGAAGTTTCTCAAAATGTTATTAAAAAAGTGGTAGAATTATGC CAACCTGGAGCCAAAATATACGATATTTGCGTTCGTGGTGATGAACTATTGAACGAAGCT ATCAAGAAAGTATATCGTACCAAGGATGCTTATAAAGGTATTGCTTTCCCTACCGCTGTA TCTCCTAATGATATGGCTGCTCATTTATCTCCTTTAAAAAGTGATCCCGAAGCCAATCTC GCTTTGAAATCGGGTGATGTTGTAAAAATTCTTTTGGGTGCTCATATTGATGGATTTGCT TCCTTGGTCGCTACTACAACTGTAGTTTCTGAAGAACCAGTTACTGGTCCTGCCGCTGAT GTTATTGCAGCTGCTTCTGCTGCTTTGAAGGCTGCTCAACGCACTATTAAACCTGGTAAT ACTAACTGGCAAGTCACTGACATTGTTGACAAAATTGCTACTAGCTATGGCTGCAAACCT GTTGCTGGTATGCTTAGCCATCAGCAAGAGCGTGAAGTTATTGATGGCAAAAAACAGGTT ATTTTAAATCCTTCTGATTCTCAACGTAGTGAAATGGATACTTTTACGTTTGAGGAAGGA GAAGTTTATGGCGTTGACATTCTTGTTTCAACATCGCCTTCTGGGAAAGTGAAGCGTTCT GACATTGCTACTCGTATTTACAAAAAGACCGATACAACTTACATGTTGAAACTTCAAGCT AGCCGCAAAGTCTATTCTGAAATCCAAACTAAGTTTGGTCCTTTCCCATTTTCCACTCGT AATATTAGTTTTGATTCAAGAACCAATATGGGATTAAATGAATGTACTAGCCACAAACTT TTGTTCCCTTATGAAGTTTTGCTCGATAAAGACGGAGGCATTGTTGCTGAATTCTATTCA ACCATTGCTTTGACCAAAAAGGGTACAATTATTCTCAGCGATTCTGAACCTAAGGAAGAT TTCATTAAATCCGATAAAAAAGTTGAAGACCCAGAAATTGTGGCTCTCCTTGAGACTCCC ATCAAAGTGACCAAAAACAAGAAGAAGAGCAAGAAGCCATCAAAAGCTAATGAATAAGGT TGGTAAATAAAAATTTTATGTTTCTAGTTTGACCAGTCAATAAAAGGTTTTTCCCATTAA AA
  • Download Fasta

  • Fasta :-

    MSTKEATSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELL NEAIKKVYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHID GFASLVATTTVVSEEPVTGPAADVIAAASAALKAAQRTIKPGNTNWQVTDIVDKIATSYG CKPVAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVSTSPSGKV KRSDIATRIYKKTDTTYMLKLQASRKVYSEIQTKFGPFPFSTRNISFDSRTNMGLNECTS HKLLFPYEVLLDKDGGIVAEFYSTIALTKKGTIILSDSEPKEDFIKSDKKVEDPEIVALL ETPIKVTKNKKKSKKPSKANE

    No Results
  • title: active site
  • coordinates: H91,L114,L125,S237,F305,Y322
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
SPAC23H4.09T70.5970.049SPAC23H4.09T30.5790.062SPAC23H4.09T1380.5460.289SPAC23H4.09S20.5290.053
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
SPAC23H4.09T70.5970.049SPAC23H4.09T30.5790.062SPAC23H4.09T1380.5460.289SPAC23H4.09S20.5290.053
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPAC23H4.09213 SDSQRSEMDT0.997unspSPAC23H4.09213 SDSQRSEMDT0.997unspSPAC23H4.09213 SDSQRSEMDT0.997unspSPAC23H4.09373 SNKKKSKKPS0.998unspSPAC23H4.098 SKEATSETAV0.99unspSPAC23H4.0984 SPTAVSPNDM0.99unsp

SPAC23H4.09      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India