SPAC27F1.03c | ubiquitin C-terminal hydrolase Uch1

_IDPredictionOTHERSPmTPCS_Position
SPAC27F1.03cOTHER0.9998600.0000530.000087
No Results

  • Fasta :-

    >SPAC27F1.03c MWRPLENTPEVLEPYLQKIGVQDASVFDLFSLEEIPEYIPRPVHALLFVFPSSGTKTIYK GSRILPKDSDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAEGSSIE ERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYELDGRQ EGPVQHSEIESDLLNAEVLSVIKNYIQSIDSPFFSLVAITTP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/741 Sequence name : 741 Sequence length : 222 VALUES OF COMPUTED PARAMETERS Coef20 : 3.076 CoefTot : 0.004 ChDiff : -16 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.900 0.894 0.010 0.444 MesoH : -0.620 0.164 -0.399 0.203 MuHd_075 : 23.095 18.054 6.311 6.490 MuHd_095 : 45.492 26.588 12.879 8.181 MuHd_100 : 48.870 28.154 12.868 9.280 MuHd_105 : 42.580 23.600 10.356 8.101 Hmax_075 : -3.150 2.012 -3.466 2.083 Hmax_095 : 12.600 10.100 1.183 4.270 Hmax_100 : 14.700 10.100 1.183 4.820 Hmax_105 : 11.200 8.867 0.183 5.238 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5912 0.4088 DFMC : 0.6896 0.3104
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 222 SPAC27F1.03c MWRPLENTPEVLEPYLQKIGVQDASVFDLFSLEEIPEYIPRPVHALLFVFPSSGTKTIYKGSRILPKDSDKVLWYPQTIP 80 NACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAEGSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFI 160 CFVKGKSKDDNHFYELDGRQEGPVQHSEIESDLLNAEVLSVIKNYIQSIDSPFFSLVAITTP 240 ................................................................................ 80 ................................................................................ 160 .............................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC27F1.03c 3 ----MWR|PL 0.093 . SPAC27F1.03c 18 LEPYLQK|IG 0.058 . SPAC27F1.03c 41 IPEYIPR|PV 0.173 . SPAC27F1.03c 56 FPSSGTK|TI 0.070 . SPAC27F1.03c 60 GTKTIYK|GS 0.066 . SPAC27F1.03c 63 TIYKGSR|IL 0.083 . SPAC27F1.03c 67 GSRILPK|DS 0.125 . SPAC27F1.03c 71 LPKDSDK|VL 0.062 . SPAC27F1.03c 98 VSNGELR|RK 0.076 . SPAC27F1.03c 99 SNGELRR|KV 0.195 . SPAC27F1.03c 100 NGELRRK|VN 0.071 . SPAC27F1.03c 108 NENDFIK|SL 0.081 . SPAC27F1.03c 112 FIKSLIR|TA 0.087 . SPAC27F1.03c 122 GSSIEER|AK 0.100 . SPAC27F1.03c 124 SIEERAK|LI 0.075 . SPAC27F1.03c 130 KLIEDSK|EL 0.064 . SPAC27F1.03c 164 HFICFVK|GK 0.071 . SPAC27F1.03c 166 ICFVKGK|SK 0.112 . SPAC27F1.03c 168 FVKGKSK|DD 0.063 . SPAC27F1.03c 179 FYELDGR|QE 0.104 . SPAC27F1.03c 203 EVLSVIK|NY 0.060 . ____________________________^_________________

  • Fasta :-

    >SPAC27F1.03c TTGGTGTTTTGCCTCTTTGCTGACTTCTGAGACCTCTGCCACGCCTTCCAAACCTGATCA AAAAAGCCTCAATTAGAGCCATTTATCATTCGAGAAAAATTACAATGTGGAGGCCTTTAG AAAATACACCAGAGGTGCTGGAACCTTACTTACAAAAAATCGGTGTACAAGATGCTAGCG TTTTTGACCTGTTTTCATTAGAGGAAATCCCCGAATATATCCCTCGTCCTGTCCATGCTC TTTTATTCGTTTTTCCATCCTCAGGAACAAAAACTATATATAAAGGATCACGAATTTTAC CAAAGGATAGTGACAAAGTCTTGTGGTACCCTCAAACAATTCCAAATGCTTGCGGAACGA TTGGATTGCTACATGCGGTTTCGAATGGAGAACTTAGAAGAAAAGTCAATGAAAATGATT TTATTAAAAGTCTAATCAGAACTGCTGAAGGTTCATCTATCGAAGAAAGGGCTAAGCTTA TCGAGGATTCGAAAGAACTTGAAGCTTTACATGCAGCATTTGCTGGTCCACCTTTGGAAG TAGAGGGGTCTGAGGAAGATGTAGAAACTGATCTTCATTTTATCTGTTTTGTAAAGGGAA AATCAAAGGACGACAATCATTTTTATGAGCTAGACGGCCGCCAAGAGGGGCCCGTGCAAC ATTCTGAAATTGAAAGTGATTTACTGAATGCCGAAGTACTTTCAGTTATTAAAAATTATA TTCAGAGTATTGATTCTCCTTTCTTTTCTCTTGTCGCAATTACGACTCCGTAACCTATGT AAGCTAAATGTTGTGAAACTTAATGAAATGATTACTTTGGCAATTGGAAGTATGATAATA GCCATTTAAAATATTGCTTCTTAA
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  • Fasta :-

    MWRPLENTPEVLEPYLQKIGVQDASVFDLFSLEEIPEYIPRPVHALLFVFPSSGTKTIYK GSRILPKDSDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAEGSSIE ERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYELDGRQ EGPVQHSEIESDLLNAEVLSVIKNYIQSIDSPFFSLVAITTP

  • title: catalytic site
  • coordinates: Q77,C83,H158,D177
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPAC27F1.03c167 SVKGKSKDDN0.996unspSPAC27F1.03c167 SVKGKSKDDN0.996unspSPAC27F1.03c167 SVKGKSKDDN0.996unspSPAC27F1.03c187 SPVQHSEIES0.996unspSPAC27F1.03c118 SAEGSSIEER0.995unspSPAC27F1.03c149 SEVEGSEEDV0.992unsp

SPAC27F1.03c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India