SPAC31G5.13 | 19S proteasome regulatory subunit Rpn11

UniProt_ID: P41878

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0046872 GO:0005515
Computed_GO_Functions: metal ion binding protein binding
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs: GO:0005737 GO:0034399 GO:0031595 GO:0005634 GO:0008541
Curated_GO_Components: cytoplasm nuclear periphery nuclear proteasome complex nucleus proteasome regulatory particle, lid subcomplex
Curated_GO_Function_IDs: GO:0008237 GO:0070628 GO:0005515 GO:0004843
Curated_GO_Functions: metallopeptidase activity proteasome binding protein binding thiol-dependent ubiquitin-specific protease activity
Curated_GO_Processes: positive regulation of mitotic metaphase/anaphase transition proteasome-mediated ubiquitin-dependent protein catabolic process protein deubiquitination

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	SPAC31G5.13	OTHER	0.987360	0.001450	0.011190

No Results

Fasta :-
>SPAC31G5.13 MESLQRLLQGARMGTGMMGDQPLVDNSECVYISSLALLKMLRHGRHGTPMEVMGLMLGEF VDDFTVRVVDVFAMPQSGTGVSVEAVDPVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCW LSSVDINTQQSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNL GHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKN HASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQDPKKHLDAEVQKCIDNNISSMLA CMLDSVAF
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/342 Sequence name : 342 Sequence length : 308 VALUES OF COMPUTED PARAMETERS Coef20 : 3.678 CoefTot : -0.654 ChDiff : -4 ZoneTo : 19 KR : 2 DE : 1 CleavSite : 14 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.071 1.329 -0.052 0.454 MesoH : -0.384 0.430 -0.341 0.233 MuHd_075 : 24.952 14.098 4.225 4.631 MuHd_095 : 23.984 16.122 7.654 5.192 MuHd_100 : 34.958 22.292 9.557 7.191 MuHd_105 : 43.279 26.689 10.864 9.273 Hmax_075 : 12.300 9.000 0.024 3.590 Hmax_095 : 14.175 11.550 1.951 4.209 Hmax_100 : 15.600 14.000 2.349 4.990 Hmax_105 : 18.400 16.600 2.568 5.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9182 0.0818 DFMC : 0.8699 0.1301

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 308 SPAC31G5.13 MESLQRLLQGARMGTGMMGDQPLVDNSECVYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTG 80 VSVEAVDPVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVKGKVVIDAFR 160 LINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKN 240 HASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQDPKKHLDAEVQKCIDNNISSMLACMLDSVAF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC31G5.13 6 -MESLQR|LL 0.082 . SPAC31G5.13 12 RLLQGAR|MG 0.078 . SPAC31G5.13 39 SSLALLK|ML 0.071 . SPAC31G5.13 42 ALLKMLR|HG 0.087 . SPAC31G5.13 45 KMLRHGR|HG 0.302 . SPAC31G5.13 67 VDDFTVR|VV 0.098 . SPAC31G5.13 92 VDPVFQK|NM 0.072 . SPAC31G5.13 99 NMMDMLK|QT 0.077 . SPAC31G5.13 103 MLKQTGR|PE 0.098 . SPAC31G5.13 138 FEQLTPR|AV 0.125 . SPAC31G5.13 151 DPIQSVK|GK 0.062 . SPAC31G5.13 153 IQSVKGK|VV 0.132 . SPAC31G5.13 160 VVIDAFR|LI 0.088 . SPAC31G5.13 174 MMGQEPR|QT 0.116 . SPAC31G5.13 185 NLGHINK|PS 0.075 . SPAC31G5.13 197 LIHGLGR|HY 0.086 . SPAC31G5.13 203 RHYYSLR|IN 0.096 . SPAC31G5.13 207 SLRINYK|KT 0.079 . SPAC31G5.13 208 LRINYKK|TE 0.099 . SPAC31G5.13 221 MLLNLHK|QP 0.064 . SPAC31G5.13 239 FNSAAEK|NH 0.072 . SPAC31G5.13 246 NHASIDK|MK 0.074 . SPAC31G5.13 248 ASIDKMK|SL 0.126 . SPAC31G5.13 257 SEQYTER|VQ 0.088 . SPAC31G5.13 270 LSPEQLR|IQ 0.084 . SPAC31G5.13 276 RIQYVGK|QD 0.068 . SPAC31G5.13 280 VGKQDPK|KH 0.064 . SPAC31G5.13 281 GKQDPKK|HL 0.158 . SPAC31G5.13 289 LDAEVQK|CI 0.084 . ____________________________^_________________

Fasta :-
>SPAC31G5.13 TCTAGAAAAAACCTGTTTATAGCCAACTACCACGTAAACGTATACTAGCTGCCTAAGTGA GACCAAAGACATAGAATCTTGTATATTCGTTTTGTATAGTGGTTGAAACATATAGAAAGA ACTTCCTTTGAAGAACAAGCACATTATAGTGACCTTTGATTGTTTTTGTCGTCTTACTAA ATATCAGTGAACAGCATTAACGTTTTGGTAACTTTATTTAAATACTTATACTGAGTTTCT CATTTAATCTCCAATTACACTTTTATTTGCGGTTATTTGAGAGGAACCCCACTGATACTG ATAAACTCTCATATTTCAATACATACATACGAGTCATATTTTTCGCGATGGAATCTTTAC AAAGATTGTTACAAGGTGCCCGCATGGGTACTGGTATGATGGGAGATCAGCCTCTTGTTG ATAATTCCGAGTGTGTATACATTTCATCTCTAGCTTTGTTAAAAATGCTTCGTCATGGGC GACATGGTACACCAATGGAAGTTATGGGTTTGATGTTAGGAGAATTCGTTGATGACTTTA CAGTACGTGTTGTTGATGTTTTTGCAATGCCTCAATCTGGTACAGGTGTCAGTGTAGAAG CAGTCGATCCAGTTTTCCAAAAAAATATGATGGATATGCTTAAGCAAACAGGACGGCCAG AAATGGTTGTAGGTTGGTATCATTCTCACCCGGGTTTTGGTTGTTGGCTTTCTAGTGTCG ATATCAACACCCAACAATCATTTGAGCAATTAACACCAAGAGCGGTGGCAGTTGTTGTCG ACCCTATTCAATCTGTCAAAGGAAAGGTGGTAATTGACGCCTTTCGATTGATTAATCCGT CTACCCTAATGATGGGTCAGGAACCCAGACAAACAACTTCCAATTTGGGTCACATCAACA AACCTAGCATTCAAGCTTTAATTCACGGTTTAGGAAGACATTACTACTCCCTTCGCATCA ATTACAAAAAAACTGAGCTTGAAGAGATCATGCTTTTGAATTTACACAAACAGCCTTGGG CACATGGTCTTTTACTTGAAAACTTTAATTCTGCTGCGGAAAAAAATCATGCTTCTATTG ATAAGATGAAATCCTTGTCAGAACAGTACACTGAACGTGTTCAAAATGAAGTGACTTTAA GTCCGGAGCAACTTCGTATTCAATACGTTGGTAAACAAGATCCCAAGAAGCATCTTGACG CTGAGGTTCAGAAATGTATAGACAACAATATTTCTTCCATGTTAGCTTGTATGCTTGATT CCGTTGCCTTCTAGTACATCTATTTTGGTAATACCTCTTTTCCATCATCCGTTTTTTATG AGCTACTTTCTTTCCTTACTCAAAGCATTTATGAACTGTTTGAATAATCCTGTTGGTCGA ATCTGATACTACTTTTTTACGATTTCATATTCGTGACTAGGAGTACATTTTTTTTAAAAC TTTTTACATGATCGTGGAGTATGATTGATGATATTTTGGTAAGCTCTTGAGATTGCGAGC GTTTGCTTTGATGGATTCTTATATATTTTTTTTCATAGATCCTTAAGATATACCTGCACA CCAGTCTTTCAAGCTTCTTCCCAATAAGAAAAAATTGTTTCAATTATTGAATTTGTAAAC ATCTTCTACCAACATGTTAAAAATTTTGTTTCCTTGATTGTTTGTAATGTACCTGT
Download Fasta

Fasta :-

MESLQRLLQGARMGTGMMGDQPLVDNSECVYISSLALLKMLRHGRHGTPMEVMGLMLGEF VDDFTVRVVDVFAMPQSGTGVSVEAVDPVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCW LSSVDINTQQSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNL GHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKN HASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQDPKKHLDAEVQKCIDNNISSMLA CMLDSVAF

JAB1/MPN domain

title: MPN+ (JAMM) motif
coordinates: E51,H112,H114,S122,D125

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	SPAC31G5.13	48 T	GRHGTPMEV	0.994	unsp	SPAC31G5.13	249 S	DKMKSLSEQ	0.995	unsp

SPAC31G5.13 | 19S proteasome regulatory subunit Rpn11

ID's

UniProt_ID: P41878

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0046872 GO:0005515

Computed_GO_Functions: metal ion binding protein binding

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs: GO:0005737 GO:0034399 GO:0031595 GO:0005634 GO:0008541

Curated_GO_Components: cytoplasm nuclear periphery nuclear proteasome complex nucleus proteasome regulatory particle, lid subcomplex

Curated_GO_Function_IDs: GO:0008237 GO:0070628 GO:0005515 GO:0004843

Curated_GO_Functions: metallopeptidase activity proteasome binding protein binding thiol-dependent ubiquitin-specific protease activity

Curated_GO_Processes: positive regulation of mitotic metaphase/anaphase transition proteasome-mediated ubiquitin-dependent protein catabolic process protein deubiquitination

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

JAB1/MPN domain

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

SPAC31G5.13

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India