SPAC4A8.13c | 20S proteasome complex subunit beta 5

_IDPredictionOTHERSPmTPCS_Position
SPAC4A8.13cOTHER0.9998060.0000270.000168
No Results

  • Fasta :-

    >SPAC4A8.13c MNSIVSKYTQSTNNDDPKKIIEEEGFTNRFDVVPVPQSSLYLRNLTDETKNKHCLIKMNH GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSDGT RLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHI DENGWVFHGNFDVDSLIWEAKDNENSFAHIPR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/170 Sequence name : 170 Sequence length : 272 VALUES OF COMPUTED PARAMETERS Coef20 : 3.445 CoefTot : -0.491 ChDiff : -2 ZoneTo : 14 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.106 1.253 0.113 0.548 MesoH : -0.112 0.414 -0.239 0.236 MuHd_075 : 9.518 10.929 3.391 2.700 MuHd_095 : 22.813 17.759 7.750 5.977 MuHd_100 : 15.011 14.840 5.558 4.523 MuHd_105 : 5.658 10.132 2.710 2.717 Hmax_075 : -7.117 -2.917 -4.081 -0.093 Hmax_095 : 1.600 4.400 -1.027 2.400 Hmax_100 : 1.000 4.300 -1.063 2.270 Hmax_105 : -6.300 -3.600 -3.986 0.220 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9161 0.0839 DFMC : 0.9168 0.0832
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 272 SPAC4A8.13c MNSIVSKYTQSTNNDDPKKIIEEEGFTNRFDVVPVPQSSLYLRNLTDETKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSR 80 ASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGT 160 MLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHI 240 DENGWVFHGNFDVDSLIWEAKDNENSFAHIPR 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC4A8.13c 7 MNSIVSK|YT 0.082 . SPAC4A8.13c 18 TNNDDPK|KI 0.090 . SPAC4A8.13c 19 NNDDPKK|II 0.144 . SPAC4A8.13c 29 EEGFTNR|FD 0.082 . SPAC4A8.13c 43 QSSLYLR|NL 0.123 . SPAC4A8.13c 50 NLTDETK|NK 0.059 . SPAC4A8.13c 52 TDETKNK|HC 0.074 . SPAC4A8.13c 57 NKHCLIK|MN 0.074 . SPAC4A8.13c 68 TTTLAFR|YQ 0.102 . SPAC4A8.13c 80 VVCVDSR|AS 0.072 . SPAC4A8.13c 93 IASQTVK|KV 0.100 . SPAC4A8.13c 94 ASQTVKK|VI 0.116 . SPAC4A8.13c 125 VLGMECR|LH 0.071 . SPAC4A8.13c 130 CRLHQLR|NK 0.082 . SPAC4A8.13c 132 LHQLRNK|EL 0.064 . SPAC4A8.13c 142 SVSAASK|IL 0.073 . SPAC4A8.13c 152 NITYSYK|GY 0.076 . SPAC4A8.13c 167 MLAGTGK|GG 0.068 . SPAC4A8.13c 181 IDSDGTR|LK 0.106 . SPAC4A8.13c 183 SDGTRLK|GD 0.064 . SPAC4A8.13c 205 VLDSGYR|WD 0.068 . SPAC4A8.13c 210 YRWDLSK|QE 0.063 . SPAC4A8.13c 219 ALYLAQR|SI 0.118 . SPAC4A8.13c 227 IVAATHR|DA 0.164 . SPAC4A8.13c 261 SLIWEAK|DN 0.101 . SPAC4A8.13c 272 SFAHIPR|-- 0.121 . ____________________________^_________________

  • Fasta :-

    >SPAC4A8.13c ACGTGCTAAGAGCGTAATACTATTCTTTAATCATGAATTCTATCGTATCTAAGTATACAC AAAGTACTAACAATGATGACCCAAAAAAAATAATAGAAGAAGAAGGATTTACAAATCGAT TTGATGTCGTACCAGTGCCTCAATCTTCTCTTTATTTACGAAACTTAACAGATGAAACGA AAAACAAGCATTGTCTTATTAAAATGAATCATGGTACTACTACTTTAGCTTTTCGTTACC AACATGGTATCGTTGTTTGTGTAGATTCGAGAGCATCTGCCGGTCCTCTTATTGCTTCAC AAACCGTTAAAAAAGTTATAGAGATAAACCCATATCTTTTAGGTACTCTTGCTGGTGGTG CAGCTGACTGTCAGTTTTGGGAGACAGTTCTAGGAATGGAATGTCGTTTACATCAACTTA GAAATAAGGAGTTAATCTCTGTTTCTGCTGCTAGCAAAATTCTTTCAAACATTACTTATT CATACAAGGGTTATGGACTTAGCATGGGTACTATGCTTGCTGGAACAGGAAAAGGTGGTA CTGCACTTTACTACATCGACAGTGATGGCACCCGATTGAAAGGTGATTTGTTTTCCGTTG GTTCAGGTTCTACATTTGCGTACGGTGTTTTGGACTCTGGATATCGCTGGGACTTATCTA AACAAGAAGCTCTTTATTTAGCTCAGCGCTCTATTGTTGCTGCCACTCACAGAGATGCAT ACTCTGGTGGCTCAGTAAATCTTTATCACATTGATGAAAATGGTTGGGTCTTCCATGGAA ACTTTGATGTTGATAGTCTTATATGGGAAGCAAAAGATAACGAAAACTCCTTTGCTCATA TCCCTCGCTAAACTCATGCTTGCTAGTAGTCATGTGTCATCGGTGTATTAAATGAGACGT TGTTATTTGCTATTCCCTTCTAGGTCAACTGTCATTTATTCATTTATTTTATACCCTTAT ATTTGAATGTCGAAGTCAATTCCGTAAACTATACATCGTTTGTAACTTCTTTCAGAGAAT GTACAATTTCACATTGCCATATATTTGATTGACTAGCTTAACATGACTTGAAATGAACCT TGTTTTCAAATCTGTTTTTATCAGTATTCGAGGAGGGGGTTATATTACCGTGTAAGTTAT CGTTCATTAATAAATCTATACACACCATATGATAATTGTTCCATTAATGTGATGAGTACT AACGATTGTTA
  • Download Fasta

  • Fasta :-

    MNSIVSKYTQSTNNDDPKKIIEEEGFTNRFDVVPVPQSSLYLRNLTDETKNKHCLIKMNH GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSDGT RLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHI DENGWVFHGNFDVDSLIWEAKDNENSFAHIPR

  • title: active site
  • coordinates: T62,D78,R80,K94,S191,D228,S231,G232
No Results
No Results
No Results

SPAC4A8.13c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India