SPAC521.02 | WLM domain protein

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  • Fasta :-

    >SPAC521.02 MIAILYLYYILTTSILLSVSFMLRINDDDHPNEKIGFISAIKGDFHDLSSDYLKRIAAMA FPIMKEHGFGVTSLDEVAYNAKFWGRNWNKGECIELVLRDASNRWLPFEFVMDVFLHELC HIWQGPHDRRFFSHLSTLRAALIALYAKGYKGPGKYMTWDSFVLANVVGNYNTVVFNGIT LERSTMHGVETCGGSLQRKKKIRRKPTPSSTKKRKLTRTGQKLGTDMNIRLELLKSPAKP QAQSMRGREARIAAALLRVDNSNEYKPKDHNSSTTLENYFVVE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/566 Sequence name : 566 Sequence length : 283 VALUES OF COMPUTED PARAMETERS Coef20 : 4.756 CoefTot : 0.739 ChDiff : 12 ZoneTo : 26 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.924 2.035 0.351 0.756 MesoH : -0.408 0.371 -0.384 0.240 MuHd_075 : 19.077 15.372 3.731 4.338 MuHd_095 : 20.424 17.129 5.022 5.275 MuHd_100 : 16.143 10.814 3.676 4.140 MuHd_105 : 13.757 9.549 2.762 3.645 Hmax_075 : 18.783 23.100 4.467 7.023 Hmax_095 : 17.000 19.163 3.331 6.221 Hmax_100 : 17.300 17.800 3.377 5.840 Hmax_105 : 15.200 22.400 2.605 5.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5656 0.4344 DFMC : 0.6142 0.3858
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 283 SPAC521.02 MIAILYLYYILTTSILLSVSFMLRINDDDHPNEKIGFISAIKGDFHDLSSDYLKRIAAMAFPIMKEHGFGVTSLDEVAYN 80 AKFWGRNWNKGECIELVLRDASNRWLPFEFVMDVFLHELCHIWQGPHDRRFFSHLSTLRAALIALYAKGYKGPGKYMTWD 160 SFVLANVVGNYNTVVFNGITLERSTMHGVETCGGSLQRKKKIRRKPTPSSTKKRKLTRTGQKLGTDMNIRLELLKSPAKP 240 QAQSMRGREARIAAALLRVDNSNEYKPKDHNSSTTLENYFVVE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..........P................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ SPAC521.02 24 SVSFMLR|IN 0.103 . SPAC521.02 34 DDHPNEK|IG 0.058 . SPAC521.02 42 GFISAIK|GD 0.061 . SPAC521.02 54 LSSDYLK|RI 0.072 . SPAC521.02 55 SSDYLKR|IA 0.246 . SPAC521.02 65 MAFPIMK|EH 0.072 . SPAC521.02 82 EVAYNAK|FW 0.080 . SPAC521.02 86 NAKFWGR|NW 0.139 . SPAC521.02 90 WGRNWNK|GE 0.068 . SPAC521.02 99 CIELVLR|DA 0.087 . SPAC521.02 104 LRDASNR|WL 0.096 . SPAC521.02 129 WQGPHDR|RF 0.107 . SPAC521.02 130 QGPHDRR|FF 0.136 . SPAC521.02 139 SHLSTLR|AA 0.091 . SPAC521.02 148 LIALYAK|GY 0.067 . SPAC521.02 151 LYAKGYK|GP 0.073 . SPAC521.02 155 GYKGPGK|YM 0.066 . SPAC521.02 183 NGITLER|ST 0.154 . SPAC521.02 198 CGGSLQR|KK 0.071 . SPAC521.02 199 GGSLQRK|KK 0.092 . SPAC521.02 200 GSLQRKK|KI 0.105 . SPAC521.02 201 SLQRKKK|IR 0.372 . SPAC521.02 203 QRKKKIR|RK 0.096 . SPAC521.02 204 RKKKIRR|KP 0.142 . SPAC521.02 205 KKKIRRK|PT 0.086 . SPAC521.02 212 PTPSSTK|KR 0.053 . SPAC521.02 213 TPSSTKK|RK 0.114 . SPAC521.02 214 PSSTKKR|KL 0.310 . SPAC521.02 215 SSTKKRK|LT 0.136 . SPAC521.02 218 KKRKLTR|TG 0.105 . SPAC521.02 222 LTRTGQK|LG 0.058 . SPAC521.02 230 GTDMNIR|LE 0.062 . SPAC521.02 235 IRLELLK|SP 0.072 . SPAC521.02 239 LLKSPAK|PQ 0.066 . SPAC521.02 246 PQAQSMR|GR 0.129 . SPAC521.02 248 AQSMRGR|EA 0.146 . SPAC521.02 251 MRGREAR|IA 0.546 *ProP* SPAC521.02 258 IAAALLR|VD 0.079 . SPAC521.02 266 DNSNEYK|PK 0.075 . SPAC521.02 268 SNEYKPK|DH 0.083 . ____________________________^_________________

  • Fasta :-

    >SPAC521.02 TGACGGTACCATAAAATATTAAAACGCAGTAACTCCATGATCGCTATATTGTATTTATAT TATATTCTGACTACGAGTATCCTTTTAAGTGTTAGCTTTATGCTACGAATAAACGACGAT GACCATCCAAATGAGAAAATAGGATTTATATCTGCTATAAAAGGAGATTTCCATGATCTA TCTTCTGATTATTTAAAAAGAATTGCCGCAATGGCATTTCCTATTATGAAGGAGCATGGA TTCGGAGTCACTTCGTTGGATGAGGTTGCTTACAATGCAAAATTTTGGGGAAGAAACTGG AATAAGGGAGAATGTATTGAGCTTGTCCTTAGAGACGCTTCAAATCGATGGTTACCATTT GAATTTGTCATGGACGTGTTTTTACACGAACTCTGTCATATTTGGCAGGGGCCGCACGAT CGTCGGTTTTTCAGTCATTTATCAACTCTTCGAGCTGCCCTGATTGCTCTTTACGCCAAA GGTTATAAAGGCCCTGGAAAGTACATGACTTGGGATTCATTTGTCCTTGCCAATGTAGTA GGAAATTATAACACCGTTGTATTTAACGGAATAACTTTGGAACGCAGCACAATGCATGGT GTGGAAACTTGTGGTGGATCTTTGCAAAGAAAAAAGAAAATCAGAAGAAAGCCTACCCCT TCCTCAACAAAGAAGCGGAAGCTTACACGAACAGGACAAAAGCTTGGAACTGATATGAAC ATAAGATTAGAGCTTTTGAAATCACCTGCAAAACCCCAAGCTCAAAGCATGCGCGGAAGG GAAGCCCGAATTGCAGCGGCACTTCTCCGAGTCGACAATTCTAATGAATATAAGCCTAAA GATCACAATAGCTCTACAACCTTGGAAAACTATTTCGTAGTAGAATAAATTAGACAACAG AATAAATACATAAAAAAGAAAAAAATTTGTATACAAAATCAAATCACCTTTAAATTGTAG CATTTTTTG
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SPAC521.02      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India