SPAC56F8.11 | signal peptidase subunit Spc3 (predicted)

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  • Fasta :-

    >SPAC56F8.11 MIVDTFTNRGSTFFSKLSTVLFFLCAVITFQGVIQRREVELDTPVYVHYAKYRSARFYHA FRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEE SKMFMKDTLSNIQAHPFNEYSNQFEGKNATYTLHWTVSPKMGFLSWGAGPGSYEIPFHKI ITQPK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/499 Sequence name : 499 Sequence length : 185 VALUES OF COMPUTED PARAMETERS Coef20 : 4.608 CoefTot : -0.047 ChDiff : 3 ZoneTo : 37 KR : 4 DE : 1 CleavSite : 38 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.012 2.106 0.398 0.715 MesoH : -0.789 0.023 -0.534 0.113 MuHd_075 : 25.316 16.252 7.549 5.531 MuHd_095 : 34.573 25.229 9.605 8.492 MuHd_100 : 27.390 24.072 8.428 7.846 MuHd_105 : 25.269 22.722 7.222 7.384 Hmax_075 : 19.250 23.917 5.552 7.175 Hmax_095 : 18.550 17.237 3.182 6.562 Hmax_100 : 20.300 20.500 4.689 7.680 Hmax_105 : 18.025 7.875 3.864 2.750 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2209 0.7791 DFMC : 0.3896 0.6104 This protein is probably imported in mitochondria. f(Ser) = 0.0811 f(Arg) = 0.0811 CMi = 0.44183 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 185 SPAC56F8.11 MIVDTFTNRGSTFFSKLSTVLFFLCAVITFQGVIQRREVELDTPVYVHYAKYRSARFYHAFRNVRQQYAQVKFNMDADLS 80 ELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNIQAHPFNEYSNQFEGKNATYTLHWTVSPK 160 MGFLSWGAGPGSYEIPFHKIITQPK 240 .......................................................P........................ 80 ................................................................................ 160 ......................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ SPAC56F8.11 9 VDTFTNR|GS 0.072 . SPAC56F8.11 16 GSTFFSK|LS 0.060 . SPAC56F8.11 36 FQGVIQR|RE 0.066 . SPAC56F8.11 37 QGVIQRR|EV 0.183 . SPAC56F8.11 51 VYVHYAK|YR 0.071 . SPAC56F8.11 53 VHYAKYR|SA 0.170 . SPAC56F8.11 56 AKYRSAR|FY 0.525 *ProP* SPAC56F8.11 62 RFYHAFR|NV 0.159 . SPAC56F8.11 65 HAFRNVR|QQ 0.209 . SPAC56F8.11 72 QQYAQVK|FN 0.082 . SPAC56F8.11 88 LWDWNTK|HV 0.070 . SPAC56F8.11 102 ASYSTEK|HE 0.058 . SPAC56F8.11 105 STEKHEK|NQ 0.062 . SPAC56F8.11 113 QVVVWDK|IL 0.068 . SPAC56F8.11 122 SSPEESK|MF 0.062 . SPAC56F8.11 126 ESKMFMK|DT 0.078 . SPAC56F8.11 147 SNQFEGK|NA 0.105 . SPAC56F8.11 160 HWTVSPK|MG 0.065 . SPAC56F8.11 179 YEIPFHK|II 0.064 . SPAC56F8.11 185 KIITQPK|-- 0.071 . ____________________________^_________________

  • Fasta :-

    >SPAC56F8.11 TATTGTAGAATTGATAAACGACATTCAAAACAATAACCAATAAATTAACAAATTTTGGTA ACTGGCCGATTGCACTCAACACCATCATTTACTAAGTATCGCTTGACTTATTTAAGTTAC TTATAGCGCGTCACAAATAGATTTCCGTATACTACCAAAAACCTTTGCTACACTAAAGGA ATCGATTTGAAACAACGAAGACAAGGAATTATCCATTTCCTTCTTTAAAAATCCAGAATG ATCGTGGATACATTTACGAATCGTGGCAGTACCTTCTTCAGCAAGCTATCGACGGTGTTG TTTTTTTTATGTGCTGTTATTACTTTTCAAGGCGTAATTCAGCGTAGAGAAGTGGAGTTA GATACTCCTGTATATGTACATTATGCCAAATACAGAAGTGCACGATTCTATCACGCTTTT CGCAATGTCCGTCAGCAGTATGCCCAAGTCAAATTCAACATGGACGCTGACCTTTCTGAA TTGTGGGATTGGAACACAAAGCACGTAGTGGTGTACTTGGTCGCATCTTATTCCACGGAG AAACATGAGAAAAACCAGGTTGTGGTTTGGGACAAAATATTGTCATCTCCTGAAGAATCC AAAATGTTTATGAAGGATACGCTTTCAAACATACAGGCACATCCTTTCAATGAGTATAGC AATCAATTCGAGGGAAAGAATGCAACTTATACATTACATTGGACAGTGTCCCCAAAAATG GGATTCTTAAGCTGGGGAGCAGGACCAGGATCGTATGAAATTCCTTTTCATAAGATTATA ACACAGCCGAAATGAGAAAAAAAGGTTTAGATTCCATCTTTGTTGGAAAACGGTACTTAC ATTATGAAAACTTGACAAGCATGAAGGAAGTTTCTTTCCTTGCAAAACTTTTTACTATAA TCATTTATACATCGTCTTCGTAACTCAAACGCATACCGTCATATCGTTTAATTGAATGTA CCAACATGATGCATTTACTCATGATTAGGTCAGAGGTGAAGTACTTTGATGAATTTATCT ACTAGCGTCAGAGGCTTGTAATTGATTGAATTATACTTAAAGAAAGCTAATGGCATAAAA AAAGGTACAAACCTATTTTTTTCACATCCTTTGGTTAGATTTTTACGTTCTTTTGTTTGT AGTAAGTAGTGTGACACTGAAAAAAGTATTTTCAACGTTTGTCACAGAGAGATAGATAGA TTTTAAAAAAAATTAGCTCAACACATAATTAATGGTG
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  • Fasta :-

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IDSitePositionGscoreIscore
SPAC56F8.11T1820.5530.074
IDSitePositionGscoreIscore
SPAC56F8.11T1820.5530.074
IDSitePeptideScoreMethod
SPAC56F8.11117 SKILSSPEES0.998unsp

SPAC56F8.11      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India