SPAC607.06c | metallopeptidase (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPAC607.06cOTHER0.9994410.0001980.000361
No Results

  • Fasta :-

    >SPAC607.06c MSQIILDNISQNETVYNRFVIIHGRVGPRASYCPQTINVKHHENSFPEQTWVVTDLYFKA IIHVVPGDNTILFTTDDGGKLELQVYYQLLVDNPFYCIAFIVGKDSDLSFDAPHGAKNDI DEGIRKLRCAAYLWQAFTAECMYRNGYGRRSFRIEESVQPDTMSCLSPWGTERLTATINI LRSDKTAEEIRSVPPDQLFHIAGDAVDKLHLPEPWHYMCMFLDTRYDPSTQKIRGHVALG GGTDMHKLGVFGSHSLHSFPSALEYVVPVFSDARRIPSYLANDANESSTIWECANIGIGA MLHELGHTLGCPHQPDGIMLRSYPIFNRSFTTREFECVRTGSKGLAPVLAKDECSWHHLD MLRFFYHPCFKLPSDPTYPSDIETNYFVKGETITFVNSTGIFLIEIEYNGQTKGWKEFNP PVGEASLTDAEIRSLSNASSNQDYRVRVLSRNFKCIDLNNVPEIIKNAKVESSFGTVYRS ERYGLRGCNGKELSNILIAPEKFKPTKIRVHCGLALDGIEVFFGDESVLLGNRGGSPHDF EIQGSQIVGFQIRCGAWVDGISIVLENGKTSPFYGNANGGGLKSYLVPKGFQLVGFYGTL GPFMDSIGFFIK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/526 Sequence name : 526 Sequence length : 612 VALUES OF COMPUTED PARAMETERS Coef20 : 4.003 CoefTot : 0.079 ChDiff : -11 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.347 1.171 0.100 0.618 MesoH : -0.026 0.337 -0.247 0.323 MuHd_075 : 45.427 31.603 13.611 8.780 MuHd_095 : 20.859 13.752 4.804 6.058 MuHd_100 : 23.930 16.300 6.084 6.240 MuHd_105 : 18.552 14.507 5.427 4.632 Hmax_075 : 16.333 18.900 4.004 5.915 Hmax_095 : 2.400 7.100 -1.313 3.540 Hmax_100 : 1.900 6.800 -1.563 3.240 Hmax_105 : 4.783 8.867 0.198 3.733 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4088 0.5912 DFMC : 0.4912 0.5088 This protein is probably imported in chloroplast. f(Ser) = 0.1667 f(Arg) = 0.0000 CMi = 2.38095 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 612 SPAC607.06c MSQIILDNISQNETVYNRFVIIHGRVGPRASYCPQTINVKHHENSFPEQTWVVTDLYFKAIIHVVPGDNTILFTTDDGGK 80 LELQVYYQLLVDNPFYCIAFIVGKDSDLSFDAPHGAKNDIDEGIRKLRCAAYLWQAFTAECMYRNGYGRRSFRIEESVQP 160 DTMSCLSPWGTERLTATINILRSDKTAEEIRSVPPDQLFHIAGDAVDKLHLPEPWHYMCMFLDTRYDPSTQKIRGHVALG 240 GGTDMHKLGVFGSHSLHSFPSALEYVVPVFSDARRIPSYLANDANESSTIWECANIGIGAMLHELGHTLGCPHQPDGIML 320 RSYPIFNRSFTTREFECVRTGSKGLAPVLAKDECSWHHLDMLRFFYHPCFKLPSDPTYPSDIETNYFVKGETITFVNSTG 400 IFLIEIEYNGQTKGWKEFNPPVGEASLTDAEIRSLSNASSNQDYRVRVLSRNFKCIDLNNVPEIIKNAKVESSFGTVYRS 480 ERYGLRGCNGKELSNILIAPEKFKPTKIRVHCGLALDGIEVFFGDESVLLGNRGGSPHDFEIQGSQIVGFQIRCGAWVDG 560 ISIVLENGKTSPFYGNANGGGLKSYLVPKGFQLVGFYGTLGPFMDSIGFFIK 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC607.06c 18 NETVYNR|FV 0.124 . SPAC607.06c 25 FVIIHGR|VG 0.069 . SPAC607.06c 29 HGRVGPR|AS 0.087 . SPAC607.06c 40 PQTINVK|HH 0.061 . SPAC607.06c 59 VTDLYFK|AI 0.064 . SPAC607.06c 80 TTDDGGK|LE 0.056 . SPAC607.06c 104 IAFIVGK|DS 0.078 . SPAC607.06c 117 DAPHGAK|ND 0.061 . SPAC607.06c 125 DIDEGIR|KL 0.064 . SPAC607.06c 126 IDEGIRK|LR 0.073 . SPAC607.06c 128 EGIRKLR|CA 0.254 . SPAC607.06c 144 TAECMYR|NG 0.083 . SPAC607.06c 149 YRNGYGR|RS 0.128 . SPAC607.06c 150 RNGYGRR|SF 0.314 . SPAC607.06c 153 YGRRSFR|IE 0.350 . SPAC607.06c 173 SPWGTER|LT 0.089 . SPAC607.06c 182 ATINILR|SD 0.107 . SPAC607.06c 185 NILRSDK|TA 0.147 . SPAC607.06c 191 KTAEEIR|SV 0.188 . SPAC607.06c 208 AGDAVDK|LH 0.058 . SPAC607.06c 225 CMFLDTR|YD 0.067 . SPAC607.06c 232 YDPSTQK|IR 0.061 . SPAC607.06c 234 PSTQKIR|GH 0.094 . SPAC607.06c 247 GGTDMHK|LG 0.055 . SPAC607.06c 274 PVFSDAR|RI 0.073 . SPAC607.06c 275 VFSDARR|IP 0.123 . SPAC607.06c 321 PDGIMLR|SY 0.115 . SPAC607.06c 328 SYPIFNR|SF 0.129 . SPAC607.06c 333 NRSFTTR|EF 0.189 . SPAC607.06c 339 REFECVR|TG 0.089 . SPAC607.06c 343 CVRTGSK|GL 0.062 . SPAC607.06c 351 LAPVLAK|DE 0.064 . SPAC607.06c 363 HHLDMLR|FF 0.074 . SPAC607.06c 371 FYHPCFK|LP 0.057 . SPAC607.06c 389 ETNYFVK|GE 0.065 . SPAC607.06c 413 EYNGQTK|GW 0.068 . SPAC607.06c 416 GQTKGWK|EF 0.059 . SPAC607.06c 433 LTDAEIR|SL 0.123 . SPAC607.06c 445 SSNQDYR|VR 0.077 . SPAC607.06c 447 NQDYRVR|VL 0.091 . SPAC607.06c 451 RVRVLSR|NF 0.084 . SPAC607.06c 454 VLSRNFK|CI 0.161 . SPAC607.06c 466 NVPEIIK|NA 0.055 . SPAC607.06c 469 EIIKNAK|VE 0.063 . SPAC607.06c 479 SFGTVYR|SE 0.184 . SPAC607.06c 482 TVYRSER|YG 0.234 . SPAC607.06c 486 SERYGLR|GC 0.104 . SPAC607.06c 491 LRGCNGK|EL 0.082 . SPAC607.06c 502 ILIAPEK|FK 0.071 . SPAC607.06c 504 IAPEKFK|PT 0.068 . SPAC607.06c 507 EKFKPTK|IR 0.063 . SPAC607.06c 509 FKPTKIR|VH 0.087 . SPAC607.06c 533 SVLLGNR|GG 0.073 . SPAC607.06c 553 IVGFQIR|CG 0.088 . SPAC607.06c 569 IVLENGK|TS 0.055 . SPAC607.06c 583 ANGGGLK|SY 0.062 . SPAC607.06c 589 KSYLVPK|GF 0.074 . SPAC607.06c 612 SIGFFIK|-- 0.071 . ____________________________^_________________

  • Fasta :-

    >SPAC607.06c CACGCGTTTGTCAAGAGCCAGCATGAGTCAGATCATTTTAGACAATATATCCCAAAACGA AACTGTATACAATAGATTTGTTATTATACATGGTAGAGTTGGACCTCGTGCAAGTTATTG CCCACAAACAATCAATGTGAAGCATCACGAAAATTCATTTCCAGAACAAACATGGGTAGT TACAGACTTATATTTTAAAGCTATCATTCACGTCGTTCCCGGAGACAATACCATACTATT TACTACGGACGATGGAGGTAAACTAGAATTGCAGGTTTATTACCAATTACTTGTTGATAA TCCTTTCTATTGTATCGCCTTTATAGTTGGAAAAGACTCAGACCTTTCATTTGATGCACC TCACGGTGCCAAAAATGATATTGATGAGGGCATCCGTAAACTCAGATGCGCTGCTTACTT ATGGCAAGCTTTCACCGCTGAATGTATGTATAGAAATGGTTATGGAAGACGTTCTTTTAG AATTGAGGAAAGTGTGCAACCCGACACAATGTCTTGTTTGTCCCCTTGGGGCACCGAAAG GTTAACAGCCACTATAAATATTCTGCGAAGTGATAAAACAGCAGAAGAGATTCGATCGGT TCCTCCAGATCAATTGTTTCATATAGCTGGAGATGCTGTCGACAAACTACATCTTCCTGA GCCTTGGCATTATATGTGCATGTTCTTGGATACACGATATGATCCTTCTACTCAAAAAAT TCGTGGACATGTAGCTTTAGGTGGAGGTACAGACATGCACAAACTTGGAGTGTTTGGTTC CCATTCGTTACATTCTTTTCCTAGTGCACTTGAGTATGTTGTACCTGTCTTTAGTGATGC CCGTAGAATCCCTTCTTACTTGGCAAATGATGCAAATGAAAGTTCTACGATTTGGGAATG TGCGAATATAGGGATAGGCGCTATGCTTCATGAGTTAGGACATACACTTGGTTGTCCTCA TCAACCAGATGGAATCATGTTGCGATCATATCCAATATTTAACCGCAGTTTTACGACAAG AGAATTTGAATGTGTTAGAACTGGAAGTAAAGGTCTTGCCCCAGTGCTTGCAAAAGATGA ATGTTCTTGGCACCATCTTGACATGTTAAGGTTTTTTTATCATCCGTGCTTTAAACTACC TTCAGACCCTACATATCCGTCGGACATTGAAACGAACTACTTTGTTAAAGGAGAAACTAT CACATTTGTCAATTCGACTGGAATCTTTTTAATTGAAATTGAATACAATGGACAGACCAA GGGCTGGAAGGAGTTTAATCCTCCAGTCGGAGAAGCTTCTTTAACTGATGCTGAAATACG CTCTCTTTCAAATGCAAGCTCCAATCAAGATTATCGTGTTCGCGTTCTATCCAGAAATTT CAAATGTATTGATTTAAACAATGTACCTGAAATTATAAAAAATGCGAAGGTTGAATCGTC TTTTGGAACTGTTTATCGATCTGAAAGATATGGTTTGCGAGGTTGTAATGGGAAAGAGTT ATCAAATATTTTAATAGCACCTGAAAAGTTTAAGCCTACTAAAATTCGTGTTCATTGTGG TTTAGCTTTGGATGGAATTGAAGTATTTTTTGGTGATGAATCAGTTCTTCTTGGTAACCG TGGTGGAAGCCCTCACGATTTTGAAATACAAGGCTCCCAAATTGTAGGCTTTCAAATACG TTGTGGAGCCTGGGTGGATGGGATATCCATTGTTTTAGAAAATGGTAAAACAAGTCCATT TTATGGAAATGCTAACGGGGGTGGGTTGAAAAGCTATTTAGTCCCAAAAGGTTTTCAATT AGTCGGGTTTTATGGCACATTAGGGCCATTCATGGATTCAATTGGGTTTTTTATTAAGTA GCTTGAATTCTGAATACTAATTGAATACAATTGCTTAAGGAGAATGAAATTACGTACCAT GTTTACAACTAATAAAATTACTACACTGAAA
  • Download Fasta

  • Fasta :-

    MSQIILDNISQNETVYNRFVIIHGRVGPRASYCPQTINVKHHENSFPEQTWVVTDLYFKA IIHVVPGDNTILFTTDDGGKLELQVYYQLLVDNPFYCIAFIVGKDSDLSFDAPHGAKNDI DEGIRKLRCAAYLWQAFTAECMYRNGYGRRSFRIEESVQPDTMSCLSPWGTERLTATINI LRSDKTAEEIRSVPPDQLFHIAGDAVDKLHLPEPWHYMCMFLDTRYDPSTQKIRGHVALG GGTDMHKLGVFGSHSLHSFPSALEYVVPVFSDARRIPSYLANDANESSTIWECANIGIGA MLHELGHTLGCPHQPDGIMLRSYPIFNRSFTTREFECVRTGSKGLAPVLAKDECSWHHLD MLRFFYHPCFKLPSDPTYPSDIETNYFVKGETITFVNSTGIFLIEIEYNGQTKGWKEFNP PVGEASLTDAEIRSLSNASSNQDYRVRVLSRNFKCIDLNNVPEIIKNAKVESSFGTVYRS ERYGLRGCNGKELSNILIAPEKFKPTKIRVHCGLALDGIEVFFGDESVLLGNRGGSPHDF EIQGSQIVGFQIRCGAWVDGISIVLENGKTSPFYGNANGGGLKSYLVPKGFQLVGFYGTL GPFMDSIGFFIK

  • title: putative sugar binding site
  • coordinates: N495,W557,P602,F603,D605
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPAC607.06c536 SNRGGSPHDF0.998unspSPAC607.06c536 SNRGGSPHDF0.998unspSPAC607.06c536 SNRGGSPHDF0.998unspSPAC607.06c151 SYGRRSFRIE0.992unspSPAC607.06c426 SVGEASLTDA0.991unsp

SPAC607.06c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India