SPBC18E5.12c | mitochondrial processing peptidase(MPP) complex alpha subunit Mas2 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC18E5.12cOTHER0.9157900.0002140.083996
No Results

  • Fasta :-

    >SPBC18E5.12c MSFLTTPKMLSEYQCLKNIGFSHKTVLKRRLFRKECTPALKSFYSTQDPALNEVRTEKLK NGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLE NLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYENSE LWTKPDALLGEFAHVTAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRPEHLTLAYA GIPQEIAKEITKELYGHLPSSSLPPLEAIPSHYTGGFMGIKKSEAPPVPYQQEFTHVVIA MEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGKGMYSRLYLNVLNQYPWVETCMAFNHS YTDSGLFGMFVTILDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSLLMNLESRM ISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVLTGNVSNPGNGTGKPTVL IHGNVDEVGDVFALCKKAGIGH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/289 Sequence name : 289 Sequence length : 502 VALUES OF COMPUTED PARAMETERS Coef20 : 3.819 CoefTot : -0.635 ChDiff : -2 ZoneTo : 34 KR : 8 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.571 1.565 0.293 0.640 MesoH : 0.301 0.477 -0.164 0.350 MuHd_075 : 42.341 23.760 13.187 8.919 MuHd_095 : 28.860 21.421 9.585 7.968 MuHd_100 : 24.025 19.191 9.348 6.574 MuHd_105 : 22.411 18.322 8.693 6.292 Hmax_075 : 4.317 10.383 3.918 3.290 Hmax_095 : 0.700 13.038 0.113 3.280 Hmax_100 : 5.300 12.100 1.189 4.040 Hmax_105 : 8.600 12.483 1.820 5.040 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4786 0.5214 DFMC : 0.5277 0.4723
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 502 SPBC18E5.12c MSFLTTPKMLSEYQCLKNIGFSHKTVLKRRLFRKECTPALKSFYSTQDPALNEVRTEKLKNGVTYVCDPRPGHFSGLGVY 80 VKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAP 160 KIQEDDLVHYRDSIIYENSELWTKPDALLGEFAHVTAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRPEHLTLAYA 240 GIPQEIAKEITKELYGHLPSSSLPPLEAIPSHYTGGFMGIKKSEAPPVPYQQEFTHVVIAMEGLPVTDPDIYALACLQFL 320 LGGGGSFSAGGPGKGMYSRLYLNVLNQYPWVETCMAFNHSYTDSGLFGMFVTILDDAAHLAAPLIIRELCNTVLSVTSEE 400 TERAKNQLKSSLLMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVLTGNVSNPGNGTGKPTVL 480 IHGNVDEVGDVFALCKKAGIGH 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...........................................................P.................... 480 ...................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ SPBC18E5.12c 8 SFLTTPK|ML 0.066 . SPBC18E5.12c 17 SEYQCLK|NI 0.072 . SPBC18E5.12c 24 NIGFSHK|TV 0.071 . SPBC18E5.12c 28 SHKTVLK|RR 0.053 . SPBC18E5.12c 29 HKTVLKR|RL 0.237 . SPBC18E5.12c 30 KTVLKRR|LF 0.130 . SPBC18E5.12c 33 LKRRLFR|KE 0.200 . SPBC18E5.12c 34 KRRLFRK|EC 0.149 . SPBC18E5.12c 41 ECTPALK|SF 0.065 . SPBC18E5.12c 55 PALNEVR|TE 0.065 . SPBC18E5.12c 58 NEVRTEK|LK 0.103 . SPBC18E5.12c 60 VRTEKLK|NG 0.059 . SPBC18E5.12c 70 TYVCDPR|PG 0.083 . SPBC18E5.12c 82 GLGVYVK|AG 0.071 . SPBC18E5.12c 86 YVKAGSR|YE 0.075 . SPBC18E5.12c 90 GSRYETK|KF 0.080 . SPBC18E5.12c 91 SRYETKK|FS 0.207 . SPBC18E5.12c 101 VSHFMDR|LA 0.121 . SPBC18E5.12c 109 AFQATER|TP 0.076 . SPBC18E5.12c 116 TPVGEMK|AK 0.075 . SPBC18E5.12c 118 VGEMKAK|LE 0.070 . SPBC18E5.12c 132 YMCSTSR|ES 0.083 . SPBC18E5.12c 147 VFNDDVK|SM 0.083 . SPBC18E5.12c 151 DVKSMSK|LL 0.054 . SPBC18E5.12c 161 ETVLAPK|IQ 0.061 . SPBC18E5.12c 171 DDLVHYR|DS 0.121 . SPBC18E5.12c 184 NSELWTK|PD 0.055 . SPBC18E5.12c 213 LLCTPDK|VN 0.065 . SPBC18E5.12c 223 ITATSIR|EY 0.090 . SPBC18E5.12c 227 SIREYLK|YF 0.070 . SPBC18E5.12c 231 YLKYFYR|PE 0.078 . SPBC18E5.12c 248 IPQEIAK|EI 0.093 . SPBC18E5.12c 252 IAKEITK|EL 0.068 . SPBC18E5.12c 281 GGFMGIK|KS 0.057 . SPBC18E5.12c 282 GFMGIKK|SE 0.116 . SPBC18E5.12c 334 SAGGPGK|GM 0.067 . SPBC18E5.12c 339 GKGMYSR|LY 0.105 . SPBC18E5.12c 387 AAPLIIR|EL 0.076 . SPBC18E5.12c 403 TSEETER|AK 0.088 . SPBC18E5.12c 405 EETERAK|NQ 0.055 . SPBC18E5.12c 409 RAKNQLK|SS 0.068 . SPBC18E5.12c 419 LMNLESR|MI 0.096 . SPBC18E5.12c 428 SLEDLGR|QI 0.093 . SPBC18E5.12c 441 GLYITPK|EM 0.072 . SPBC18E5.12c 446 PKEMIEK|ID 0.057 . SPBC18E5.12c 457 TPSDLSR|VA 0.170 . SPBC18E5.12c 460 DLSRVAR|RV 0.592 *ProP* SPBC18E5.12c 461 LSRVARR|VL 0.178 . SPBC18E5.12c 476 PGNGTGK|PT 0.066 . SPBC18E5.12c 496 DVFALCK|KA 0.073 . SPBC18E5.12c 497 VFALCKK|AG 0.081 . ____________________________^_________________

  • Fasta :-

    >SPBC18E5.12c CAGATGAGCTTTCTAACCACTCCAAAAATGTTATCAGAATACCAGTGTCTAAAAAACATC GGGTTTTCGCACAAAACGGTATTAAAACGGAGGCTATTTAGAAAAGAATGTACACCGGCA TTAAAATCATTTTACAGCACTCAAGACCCTGCATTAAACGAGGTCCGAACTGAAAAGCTT AAAAATGGTGTAACATATGTTTGTGATCCAAGACCAGGGCACTTTTCTGGTTTAGGGGTT TATGTGAAAGCTGGTTCAAGATACGAAACAAAAAAATTCTCTGGTGTGAGCCATTTTATG GATAGGCTTGCGTTTCAGGCTACTGAGCGTACTCCCGTTGGAGAAATGAAAGCAAAACTA GAAAATTTAGGAGGTAACTATATGTGTTCTACGAGTCGCGAATCCATGATATACCAAGCA GCTGTTTTTAATGATGATGTTAAGTCAATGTCCAAGCTATTAGCAGAAACCGTTTTGGCA CCAAAAATACAAGAAGATGATCTAGTTCATTATCGTGATAGTATAATATATGAAAACTCC GAGTTGTGGACGAAACCAGATGCTCTACTCGGAGAGTTTGCTCACGTTACGGCATTCCAA AACAACACGCTTGGCAATTGTCTATTGTGTACACCTGATAAAGTCAACGGTATTACTGCT ACTTCAATTAGGGAATACTTAAAATATTTTTACCGACCGGAACACCTTACTTTGGCGTAT GCTGGAATTCCTCAAGAAATAGCAAAAGAAATTACGAAGGAGCTATACGGACATTTACCC AGCTCTTCTCTACCTCCACTGGAAGCTATACCTTCGCATTATACTGGAGGCTTTATGGGA ATTAAAAAATCGGAAGCACCTCCTGTTCCATACCAACAGGAGTTTACACATGTTGTCATT GCTATGGAAGGATTACCTGTTACCGATCCGGATATCTATGCTTTGGCATGCTTACAATTT CTATTAGGTGGAGGTGGTTCATTTAGCGCAGGAGGTCCTGGAAAAGGAATGTATTCTCGA TTGTACTTGAATGTTTTAAATCAGTATCCTTGGGTCGAAACATGTATGGCTTTCAATCAT AGCTATACAGATAGCGGTCTTTTCGGTATGTTTGTTACCATTTTAGATGATGCAGCTCAT TTAGCTGCACCACTAATAATACGTGAACTCTGTAATACAGTTTTGTCTGTCACCTCTGAG GAAACAGAGCGGGCTAAGAATCAGCTAAAAAGCTCTCTATTAATGAATCTTGAGAGCAGG ATGATCTCACTAGAGGACTTGGGGAGACAGATCCAAACTCAGAATGGTCTTTATATTACT CCCAAGGAAATGATTGAGAAAATTGATGCATTGACTCCATCCGATTTAAGTAGGGTCGCA AGAAGAGTTCTGACGGGAAACGTTTCCAATCCTGGAAATGGTACTGGAAAGCCAACGGTA CTCATTCACGGAAATGTGGATGAAGTTGGAGATGTCTTTGCTCTTTGTAAAAAAGCTGGG ATTGGTCATTAATCGTTTTATCAACTATTCTTTTTGGGGGCTTTAATGAATTTTTTAACT TATGTTCTCTTTCGGTTTACTTTCGTCCTTAAC
  • Download Fasta

  • Fasta :-

    MSFLTTPKMLSEYQCLKNIGFSHKTVLKRRLFRKECTPALKSFYSTQDPALNEVRTEKLK NGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLE NLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYENSE LWTKPDALLGEFAHVTAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRPEHLTLAYA GIPQEIAKEITKELYGHLPSSSLPPLEAIPSHYTGGFMGIKKSEAPPVPYQQEFTHVVIA MEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGKGMYSRLYLNVLNQYPWVETCMAFNHS YTDSGLFGMFVTILDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSLLMNLESRM ISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVLTGNVSNPGNGTGKPTVL IHGNVDEVGDVFALCKKAGIGH

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC18E5.12c221 SITATSIREY0.991unspSPBC18E5.12c221 SITATSIREY0.991unspSPBC18E5.12c221 SITATSIREY0.991unspSPBC18E5.12c360 SAFNHSYTDS0.992unspSPBC18E5.12c422 SSRMISLEDL0.997unspSPBC18E5.12c85 SVKAGSRYET0.996unspSPBC18E5.12c134 STSRESMIYQ0.994unsp


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India