SPBC18H10.08c | ubiquitin C-terminal hydrolase Ubp4

_IDPredictionOTHERSPmTPCS_Position
SPBC18H10.08cOTHER0.9999440.0000410.000015
No Results

  • Fasta :-

    >SPBC18H10.08c MSDDYFDRLFELAFVYINEDETIQSCSFRGQRWLEEAQTLEQKNSLLKAYYYYLKALKLA YEIPCRFEISVKSTHYGEFKQFQKLAIQAVSKAFTIKSKLAVKHYLPVIQISDALSLSKK SSLKVLFLNFYSQESSKGYVFSKHTIAIPISCLQSMDSSKIYDFLKSAPFHPSMVICYSL ERYFEDVSLAYKLYSMLRSLKLDPHFMELANPKKVDSSLSYENYQPIGLTNLGNTCYMNC VLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITSAFFSLLQSVLLNHGQRSISPR NFLEIVQSLNRDFSIDGQCDAQEFLNFFLDKLHEDLNSNASRSPIAPLTEDQLSAREELP LSHFSHIEWNLHLRSNKSIVVNNFVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDDVSHV VSLQECLLKFSAPELLQGHDGWHCPVCKVQRSAKKVIMISKLPEYLIIQIQRFKISVMGR KKIDTPLGLSLQIPSKMLVPPSFQSGIGYIPSNYNLFAFICHYGQLENGHYISDVLFNNE WCHIDDSIVRTVGGITDLREDFSSSYILFYKRSSLLEEFEDKCPKMTLKRNVK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/301 Sequence name : 301 Sequence length : 593 VALUES OF COMPUTED PARAMETERS Coef20 : 3.477 CoefTot : 0.112 ChDiff : 6 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.059 1.453 0.267 0.488 MesoH : -0.099 0.402 -0.239 0.258 MuHd_075 : 33.058 13.102 6.638 5.975 MuHd_095 : 44.653 20.846 10.404 7.505 MuHd_100 : 41.127 19.136 10.447 6.930 MuHd_105 : 32.747 15.159 8.835 5.658 Hmax_075 : 19.133 16.567 2.273 6.533 Hmax_095 : 16.188 14.350 2.307 5.950 Hmax_100 : 14.800 13.600 2.210 5.600 Hmax_105 : 12.600 11.783 1.674 4.880 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7462 0.2538 DFMC : 0.8766 0.1234
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 593 SPBC18H10.08c MSDDYFDRLFELAFVYINEDETIQSCSFRGQRWLEEAQTLEQKNSLLKAYYYYLKALKLAYEIPCRFEISVKSTHYGEFK 80 QFQKLAIQAVSKAFTIKSKLAVKHYLPVIQISDALSLSKKSSLKVLFLNFYSQESSKGYVFSKHTIAIPISCLQSMDSSK 160 IYDFLKSAPFHPSMVICYSLERYFEDVSLAYKLYSMLRSLKLDPHFMELANPKKVDSSLSYENYQPIGLTNLGNTCYMNC 240 VLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITSAFFSLLQSVLLNHGQRSISPRNFLEIVQSLNRDFSIDGQCD 320 AQEFLNFFLDKLHEDLNSNASRSPIAPLTEDQLSAREELPLSHFSHIEWNLHLRSNKSIVVNNFVGQLCSRTQCMTCGRT 400 STTFAPFTSLAIPIDDVSHVVSLQECLLKFSAPELLQGHDGWHCPVCKVQRSAKKVIMISKLPEYLIIQIQRFKISVMGR 480 KKIDTPLGLSLQIPSKMLVPPSFQSGIGYIPSNYNLFAFICHYGQLENGHYISDVLFNNEWCHIDDSIVRTVGGITDLRE 560 DFSSSYILFYKRSSLLEEFEDKCPKMTLKRNVK 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC18H10.08c 8 SDDYFDR|LF 0.089 . SPBC18H10.08c 29 IQSCSFR|GQ 0.155 . SPBC18H10.08c 32 CSFRGQR|WL 0.316 . SPBC18H10.08c 43 AQTLEQK|NS 0.051 . SPBC18H10.08c 48 QKNSLLK|AY 0.069 . SPBC18H10.08c 55 AYYYYLK|AL 0.058 . SPBC18H10.08c 58 YYLKALK|LA 0.058 . SPBC18H10.08c 66 AYEIPCR|FE 0.084 . SPBC18H10.08c 72 RFEISVK|ST 0.102 . SPBC18H10.08c 80 THYGEFK|QF 0.069 . SPBC18H10.08c 84 EFKQFQK|LA 0.068 . SPBC18H10.08c 92 AIQAVSK|AF 0.066 . SPBC18H10.08c 97 SKAFTIK|SK 0.101 . SPBC18H10.08c 99 AFTIKSK|LA 0.062 . SPBC18H10.08c 103 KSKLAVK|HY 0.065 . SPBC18H10.08c 119 DALSLSK|KS 0.056 . SPBC18H10.08c 120 ALSLSKK|SS 0.226 . SPBC18H10.08c 124 SKKSSLK|VL 0.063 . SPBC18H10.08c 137 YSQESSK|GY 0.072 . SPBC18H10.08c 143 KGYVFSK|HT 0.081 . SPBC18H10.08c 160 QSMDSSK|IY 0.066 . SPBC18H10.08c 166 KIYDFLK|SA 0.088 . SPBC18H10.08c 182 ICYSLER|YF 0.086 . SPBC18H10.08c 192 DVSLAYK|LY 0.060 . SPBC18H10.08c 198 KLYSMLR|SL 0.105 . SPBC18H10.08c 201 SMLRSLK|LD 0.082 . SPBC18H10.08c 213 MELANPK|KV 0.082 . SPBC18H10.08c 214 ELANPKK|VD 0.079 . SPBC18H10.08c 249 QCLFACK|DL 0.068 . SPBC18H10.08c 259 IPMLQGR|GL 0.132 . SPBC18H10.08c 268 LQNINTK|NP 0.059 . SPBC18H10.08c 276 PLGTGGK|IT 0.066 . SPBC18H10.08c 295 LLNHGQR|SI 0.184 . SPBC18H10.08c 300 QRSISPR|NF 0.170 . SPBC18H10.08c 311 IVQSLNR|DF 0.095 . SPBC18H10.08c 331 LNFFLDK|LH 0.068 . SPBC18H10.08c 342 LNSNASR|SP 0.162 . SPBC18H10.08c 356 EDQLSAR|EE 0.077 . SPBC18H10.08c 374 EWNLHLR|SN 0.122 . SPBC18H10.08c 377 LHLRSNK|SI 0.194 . SPBC18H10.08c 391 VGQLCSR|TQ 0.067 . SPBC18H10.08c 399 QCMTCGR|TS 0.084 . SPBC18H10.08c 429 LQECLLK|FS 0.070 . SPBC18H10.08c 448 WHCPVCK|VQ 0.063 . SPBC18H10.08c 451 PVCKVQR|SA 0.231 . SPBC18H10.08c 454 KVQRSAK|KV 0.241 . SPBC18H10.08c 455 VQRSAKK|VI 0.094 . SPBC18H10.08c 461 KVIMISK|LP 0.064 . SPBC18H10.08c 472 LIIQIQR|FK 0.098 . SPBC18H10.08c 474 IQIQRFK|IS 0.061 . SPBC18H10.08c 480 KISVMGR|KK 0.112 . SPBC18H10.08c 481 ISVMGRK|KI 0.091 . SPBC18H10.08c 482 SVMGRKK|ID 0.096 . SPBC18H10.08c 496 SLQIPSK|ML 0.065 . SPBC18H10.08c 550 IDDSIVR|TV 0.119 . SPBC18H10.08c 559 GGITDLR|ED 0.066 . SPBC18H10.08c 571 SYILFYK|RS 0.063 . SPBC18H10.08c 572 YILFYKR|SS 0.176 . SPBC18H10.08c 582 LEEFEDK|CP 0.056 . SPBC18H10.08c 585 FEDKCPK|MT 0.057 . SPBC18H10.08c 589 CPKMTLK|RN 0.063 . SPBC18H10.08c 590 PKMTLKR|NV 0.262 . SPBC18H10.08c 593 TLKRNVK|-- 0.130 . ____________________________^_________________

  • Fasta :-

    >SPBC18H10.08c TTATAACTAAAGTAATCAATCCATGATCACTGGGCAAGGATAAGAAAATCTCATTTCTTG CCTCTCTGCTAACCTGCTTAGTACTTACATAACTTCCGGATTAAGCCTTCGCCGGAATAC TTGTATCTGCAAGTCCCAATTTGAATCCTTCATAGCTTCAATTGAAACCATAATAACCAA AAAAGGCTATAGTCTTGTAGTATTTGGTTCAATTCAGGTTAAGTCGCCAACACAAATACT CGGTTCTTCCTCGGATGTCCGATGATTATTTCGACAGACTATTTGAATTAGCATTCGTTT ATATTAATGAAGATGAAACGATTCAAAGCTGTTCCTTCAGAGGACAACGCTGGCTTGAAG AGGCCCAAACTCTTGAACAAAAAAATTCATTACTCAAAGCATACTATTACTATTTAAAAG CACTAAAACTTGCTTACGAAATTCCATGCCGATTCGAGATTTCTGTTAAGTCTACTCATT ATGGAGAATTCAAACAGTTCCAAAAGTTAGCAATTCAAGCCGTTTCCAAAGCCTTTACTA TAAAAAGCAAATTAGCGGTGAAGCATTATTTGCCTGTAATTCAAATCTCTGACGCTCTTT CCCTATCAAAAAAATCATCACTTAAAGTTCTTTTTCTTAATTTCTATTCCCAAGAGTCTT CAAAGGGTTATGTTTTTTCGAAGCACACGATTGCCATCCCAATATCCTGTTTGCAATCGA TGGATTCTTCAAAAATATATGACTTTTTAAAATCCGCACCTTTTCATCCAAGCATGGTTA TTTGTTACAGTTTGGAAAGATACTTCGAAGACGTTTCTTTGGCTTACAAGCTTTACTCGA TGTTACGTTCGTTGAAGTTGGATCCTCATTTCATGGAATTGGCGAACCCTAAGAAAGTTG ATAGTTCTTTATCGTATGAAAATTATCAGCCTATAGGTTTAACGAATTTGGGTAATACTT GTTACATGAATTGTGTCCTGCAATGTCTTTTTGCGTGTAAGGACTTGACTATTCCTATGT TACAGGGGAGAGGATTGCTTCAAAATATCAATACCAAAAATCCATTGGGTACCGGTGGAA AAATCACATCTGCTTTCTTTTCCTTGCTTCAAAGTGTCTTATTAAACCATGGTCAGAGAT CAATATCTCCAAGGAATTTTTTAGAAATTGTACAGTCATTGAATAGAGATTTCTCCATCG ATGGCCAATGCGATGCTCAAGAATTTTTAAATTTCTTTCTTGATAAACTTCATGAAGATT TGAACTCCAATGCATCTCGGTCTCCGATAGCACCGTTGACGGAAGATCAATTAAGTGCCA GAGAAGAACTCCCATTGTCCCACTTTTCACACATTGAATGGAACTTGCATCTCCGGTCTA ACAAGAGTATTGTGGTCAACAATTTTGTAGGTCAACTTTGCAGTCGTACTCAATGTATGA CATGTGGCCGCACATCTACTACTTTTGCTCCCTTCACATCGCTTGCGATACCGATTGACG ATGTCTCCCATGTAGTAAGCCTACAAGAATGCTTATTAAAATTTTCAGCTCCTGAACTCT TGCAAGGGCATGATGGATGGCATTGTCCCGTGTGCAAGGTTCAAAGGTCGGCAAAAAAAG TAATTATGATTTCGAAACTACCTGAATATTTGATCATACAAATTCAGAGATTTAAAATAT CCGTAATGGGTCGTAAAAAAATTGATACACCACTTGGATTGAGCTTACAGATTCCAAGTA AAATGCTGGTACCACCGAGTTTCCAATCGGGAATTGGTTATATTCCTAGCAATTATAACC TGTTTGCATTTATCTGTCATTATGGCCAGCTCGAAAATGGACATTATATATCTGATGTAC TTTTTAATAATGAATGGTGCCATATTGATGACTCAATTGTTCGAACAGTGGGCGGTATTA CTGACTTGAGAGAAGATTTCTCCTCTTCCTACATTCTTTTTTATAAACGCTCAAGTCTGT TGGAGGAGTTTGAAGATAAGTGTCCCAAAATGACTTTGAAAAGAAATGTTAAATAAAACA AAATAAAAAAAGGAAAAATGTTTTCAATAAACCTCAAATATAGTTATTGAATAAATGTTC AACTTAGCATTCATAACCGATATGAATACTTACTTAATGCTGATTACCCAACACAAAAGC TACTCTCGTTATGTTGAACAGAATGCAGGAATTGGATACAAAATTTTTTCATCCTAGAAT TTTTTTTAAACAAAGATGGTTTTTTTCTTCAAGATTGATCATATTCTTTTAAGGAAGATT TTGTTCTTAACTTTCCAGACTTTTTCTTTTTAAACACCACTTTGTTTTCATTTGATTCCT TGCTTTCTAGCGATTTGTTTCCCTCGTTTTCAGCTAACTTAGGTACTTTATCTA
  • Download Fasta

  • Fasta :-

    MSDDYFDRLFELAFVYINEDETIQSCSFRGQRWLEEAQTLEQKNSLLKAYYYYLKALKLA YEIPCRFEISVKSTHYGEFKQFQKLAIQAVSKAFTIKSKLAVKHYLPVIQISDALSLSKK SSLKVLFLNFYSQESSKGYVFSKHTIAIPISCLQSMDSSKIYDFLKSAPFHPSMVICYSL ERYFEDVSLAYKLYSMLRSLKLDPHFMELANPKKVDSSLSYENYQPIGLTNLGNTCYMNC VLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITSAFFSLLQSVLLNHGQRSISPR NFLEIVQSLNRDFSIDGQCDAQEFLNFFLDKLHEDLNSNASRSPIAPLTEDQLSAREELP LSHFSHIEWNLHLRSNKSIVVNNFVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDDVSHV VSLQECLLKFSAPELLQGHDGWHCPVCKVQRSAKKVIMISKLPEYLIIQIQRFKISVMGR KKIDTPLGLSLQIPSKMLVPPSFQSGIGYIPSNYNLFAFICHYGQLENGHYISDVLFNNE WCHIDDSIVRTVGGITDLREDFSSSYILFYKRSSLLEEFEDKCPKMTLKRNVK

  • title: Active Site
  • coordinates: N231,C236,H530,D546
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC18H10.08c354 SEDQLSAREE0.997unspSPBC18H10.08c354 SEDQLSAREE0.997unspSPBC18H10.08c354 SEDQLSAREE0.997unspSPBC18H10.08c401 SCGRTSTTFA0.995unspSPBC18H10.08c574 SYKRSSLLEE0.996unspSPBC18H10.08c135 SYSQESSKGY0.992unspSPBC18H10.08c298 SQRSISPRNF0.997unsp

SPBC18H10.08c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India