SPBC23E6.05 | ribosomal export complex protein Arx1, peptidase family (predicted)

UniProt_ID: O60180

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0046872
Computed_GO_Functions: metal ion binding
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs: GO:0005737 GO:0005829 GO:0005635 GO:0005730 GO:0005634
Curated_GO_Components: cytoplasm cytosol nuclear envelope nucleolus nucleus
Curated_GO_Function_IDs: GO:0008237 GO:0003676
Curated_GO_Functions: metallopeptidase activity nucleic acid binding
Curated_GO_Processes: ribosomal large subunit biogenesis ribosomal large subunit export from nucleus

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	SPBC23E6.05	OTHER	0.999651	0.000345	0.000004

No Results

Fasta :-
>SPBC23E6.05 MELDPSDSNSRVVDASQFSKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYK SSIYKSQRFEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFD GYTALISHTIVVTPPPQPGMGPYIGPGADAICAAHYASKAVANLLATNNSDDPITGSRLR KIVDDIASQFRVSVCPGSRIRRISRFLVGQPTIDRLEEDQNTKHAVEWPAPEEETRKADV TNSLDPANVLSTELNTWHVMPKEAWLIDISMSSQPISSLKEHPDLKPTLYIHDVNVSYML KLKASRSLLSEIKKEKSVFPFHFGSLSSERNLLGLRELTDRHILVPMPVLISSPSNVIAR EELTVITQPNPSSDLLCLTVPTPPSYVKSDFSLEDGTDAALICEGINVNIKSININV
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/728 Sequence name : 728 Sequence length : 417 VALUES OF COMPUTED PARAMETERS Coef20 : 3.741 CoefTot : 0.000 ChDiff : -9 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.571 0.178 0.588 MesoH : 0.045 0.365 -0.236 0.304 MuHd_075 : 5.618 7.941 1.217 3.247 MuHd_095 : 18.313 5.382 3.379 1.964 MuHd_100 : 21.225 5.875 3.954 2.574 MuHd_105 : 25.325 9.188 5.536 3.706 Hmax_075 : -1.000 7.200 -1.744 2.570 Hmax_095 : 0.613 1.200 -1.868 1.220 Hmax_100 : 3.800 1.900 -1.553 1.340 Hmax_105 : 3.617 2.450 -0.965 0.945 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9568 0.0432 DFMC : 0.9475 0.0525

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 417 SPBC23E6.05 MELDPSDSNSRVVDASQFSKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSIYKSQRFEKGIAEPTSIC 80 VNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALISHTIVVTPPPQPGMGPYIGPGADAICAAHYASKA 160 VANLLATNNSDDPITGSRLRKIVDDIASQFRVSVCPGSRIRRISRFLVGQPTIDRLEEDQNTKHAVEWPAPEEETRKADV 240 TNSLDPANVLSTELNTWHVMPKEAWLIDISMSSQPISSLKEHPDLKPTLYIHDVNVSYMLKLKASRSLLSEIKKEKSVFP 320 FHFGSLSSERNLLGLRELTDRHILVPMPVLISSPSNVIAREELTVITQPNPSSDLLCLTVPTPPSYVKSDFSLEDGTDAA 400 LICEGINVNIKSININV 480 ................................................................................ 80 ................................................................................ 160 ....................P........................................................... 240 ................................................................................ 320 ................................................................................ 400 ................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ SPBC23E6.05 11 PSDSNSR|VV 0.126 . SPBC23E6.05 20 DASQFSK|YR 0.081 . SPBC23E6.05 22 SQFSKYR|DA 0.182 . SPBC23E6.05 30 AGALVSK|AF 0.073 . SPBC23E6.05 38 FHQVASR|CV 0.107 . SPBC23E6.05 46 VPGASTR|EI 0.122 . SPBC23E6.05 60 NLLHEYK|SS 0.071 . SPBC23E6.05 65 YKSSIYK|SQ 0.082 . SPBC23E6.05 68 SIYKSQR|FE 0.097 . SPBC23E6.05 71 KSQRFEK|GI 0.176 . SPBC23E6.05 112 QVGDVTK|IS 0.063 . SPBC23E6.05 159 AAHYASK|AV 0.086 . SPBC23E6.05 178 DPITGSR|LR 0.070 . SPBC23E6.05 180 ITGSRLR|KI 0.086 . SPBC23E6.05 181 TGSRLRK|IV 0.641 *ProP* SPBC23E6.05 191 DIASQFR|VS 0.071 . SPBC23E6.05 199 SVCPGSR|IR 0.073 . SPBC23E6.05 201 CPGSRIR|RI 0.102 . SPBC23E6.05 202 PGSRIRR|IS 0.425 . SPBC23E6.05 205 RIRRISR|FL 0.359 . SPBC23E6.05 215 GQPTIDR|LE 0.075 . SPBC23E6.05 223 EEDQNTK|HA 0.058 . SPBC23E6.05 236 APEEETR|KA 0.098 . SPBC23E6.05 237 PEEETRK|AD 0.067 . SPBC23E6.05 262 TWHVMPK|EA 0.084 . SPBC23E6.05 280 QPISSLK|EH 0.065 . SPBC23E6.05 286 KEHPDLK|PT 0.061 . SPBC23E6.05 301 NVSYMLK|LK 0.054 . SPBC23E6.05 303 SYMLKLK|AS 0.063 . SPBC23E6.05 306 LKLKASR|SL 0.105 . SPBC23E6.05 313 SLLSEIK|KE 0.057 . SPBC23E6.05 314 LLSEIKK|EK 0.130 . SPBC23E6.05 316 SEIKKEK|SV 0.134 . SPBC23E6.05 330 GSLSSER|NL 0.078 . SPBC23E6.05 336 RNLLGLR|EL 0.064 . SPBC23E6.05 341 LRELTDR|HI 0.088 . SPBC23E6.05 360 PSNVIAR|EE 0.117 . SPBC23E6.05 388 TPPSYVK|SD 0.086 . SPBC23E6.05 411 GINVNIK|SI 0.090 . ____________________________^_________________

Fasta :-
>SPBC23E6.05 ACTTTTTTCAAAAGGCACTATCAACAGATTTACTGTTTGAAGTGCGAGTTTTGCTTAATT TTTTGATTTGAATTATGGAGCTCGATCCTTCTGATAGTAACTCTCGTGTTGTCGATGCAA GCCAATTTTCGAAGTATCGTGATGCTGGTGCTTTAGTTAGCAAAGCTTTCCATCAGGTTG CTTCTCGTTGCGTCCCAGGAGCGTCTACGCGTGAGATCTCTTCATATGGTGATAATCTTT TACATGAATATAAATCTTCCATTTACAAATCTCAACGTTTTGAAAAGGGTATTGCAGAAC CTACCAGTATTTGTGTCAATAATTGTGCTTATAACTATGCGCCTGGTCCTGAAAGCGTAA TTGCTGGAAATGATAACAGTTATCATTTGCAAGTTGGAGATGTTACCAAAATCTCAATGG GACTTCATTTTGACGGCTATACAGCTTTAATTAGTCATACTATTGTTGTAACACCACCTC CTCAGCCTGGTATGGGACCTTATATTGGACCTGGTGCTGATGCTATTTGTGCTGCTCACT ACGCTTCTAAAGCTGTTGCCAATCTCTTAGCTACCAATAATTCTGATGATCCAATTACAG GTTCACGTCTTCGTAAAATTGTCGATGACATCGCTTCTCAATTTAGAGTATCTGTTTGTC CCGGCTCTCGAATTCGCCGCATCAGTCGATTTTTAGTTGGCCAACCTACGATTGATCGGC TTGAGGAAGACCAAAATACTAAACACGCTGTTGAGTGGCCTGCTCCCGAAGAAGAGACTA GGAAAGCAGATGTTACCAATTCTTTAGACCCTGCCAATGTGTTGTCCACTGAGCTGAATA CTTGGCACGTTATGCCTAAAGAAGCATGGCTTATTGATATCTCTATGTCCTCTCAACCCA TTTCTTCTTTAAAAGAACACCCTGACTTGAAGCCAACTCTTTATATTCACGATGTTAATG TTTCTTATATGCTTAAGTTGAAAGCATCTAGGAGCTTATTATCCGAAATAAAAAAAGAGA AATCGGTTTTTCCATTCCATTTTGGTTCATTATCCTCCGAACGTAACCTCTTGGGATTGA GAGAATTAACGGATCGTCATATTCTTGTTCCAATGCCAGTCCTCATTTCTTCTCCTTCTA ACGTTATAGCTCGTGAGGAACTAACAGTCATTACTCAGCCTAATCCTTCGAGCGATTTGT TGTGTCTCACAGTTCCTACTCCACCAAGTTATGTAAAAAGCGACTTTTCTTTAGAAGATG GTACTGACGCGGCTCTCATTTGCGAAGGAATTAACGTTAATATCAAAAGCATAAACATTA ACGTTTAAATAATCAATGGTTGGTTTTATTATAGATAATTTTGGTTGGTTCATTTTTTTT TCTTTTTTGGATTAGTTCTTATAAATCAATATAAAAGTTCTACGGGTCAAAGGTAAATAC AATCTACAAATAAAATTGTGAATAACGAAG
Download Fasta

Fasta :-

MELDPSDSNSRVVDASQFSKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYK SSIYKSQRFEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFD GYTALISHTIVVTPPPQPGMGPYIGPGADAICAAHYASKAVANLLATNNSDDPITGSRLR KIVDDIASQFRVSVCPGSRIRRISRFLVGQPTIDRLEEDQNTKHAVEWPAPEEETRKADV TNSLDPANVLSTELNTWHVMPKEAWLIDISMSSQPISSLKEHPDLKPTLYIHDVNVSYML KLKASRSLLSEIKKEKSVFPFHFGSLSSERNLLGLRELTDRHILVPMPVLISSPSNVIAR EELTVITQPNPSSDLLCLTVPTPPSYVKSDFSLEDGTDAALICEGINVNIKSININV

Creatinase/aminopeptidase

title: active site
coordinates: N87,S114,L125,P275,V345,E362

	ID	Site	Position	Gscore	Iscore
	SPBC23E6.05	T	379	0.515	0.090

	ID	Site	Position	Gscore	Iscore
	SPBC23E6.05	T	379	0.515	0.090

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	SPBC23E6.05	278 S	QPISSLKEH	0.996	unsp	SPBC23E6.05	278 S	QPISSLKEH	0.996	unsp	SPBC23E6.05	278 S	QPISSLKEH	0.996	unsp	SPBC23E6.05	392 S	KSDFSLEDG	0.997	unsp	SPBC23E6.05	50 S	REISSYGDN	0.996	unsp	SPBC23E6.05	193 S	QFRVSVCPG	0.993	unsp

SPBC23E6.05 | ribosomal export complex protein Arx1, peptidase family (predicted)

ID's

UniProt_ID: O60180

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0046872

Computed_GO_Functions: metal ion binding

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs: GO:0005737 GO:0005829 GO:0005635 GO:0005730 GO:0005634

Curated_GO_Components: cytoplasm cytosol nuclear envelope nucleolus nucleus

Curated_GO_Function_IDs: GO:0008237 GO:0003676

Curated_GO_Functions: metallopeptidase activity nucleic acid binding

Curated_GO_Processes: ribosomal large subunit biogenesis ribosomal large subunit export from nucleus

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Creatinase/aminopeptidase

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

SPBC23E6.05

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India