SPBC2D10.20 | ubiquitin conjugating enzyme Ubc1 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC2D10.20OTHER0.9999700.0000140.000016
No Results

  • Fasta :-

    >SPBC2D10.20 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIP IDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPS NPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAPAGVDLDAENTEFGGIDPNIITNLQQFG FSTELIVRVLQREHIKSQEDLKDYPNGINGILDQLLH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/926 Sequence name : 926 Sequence length : 217 VALUES OF COMPUTED PARAMETERS Coef20 : 3.958 CoefTot : 0.112 ChDiff : -10 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.853 1.035 0.040 0.434 MesoH : -0.677 0.003 -0.426 0.166 MuHd_075 : 22.490 13.064 6.265 4.380 MuHd_095 : 42.408 22.156 10.637 7.360 MuHd_100 : 41.413 23.639 11.581 8.046 MuHd_105 : 37.727 23.114 11.367 8.333 Hmax_075 : -13.767 2.333 -3.979 -0.140 Hmax_095 : 1.837 4.200 -1.521 1.470 Hmax_100 : 7.200 9.200 0.530 3.010 Hmax_105 : 2.100 9.200 0.041 2.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6535 0.3465 DFMC : 0.6824 0.3176
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 217 SPBC2D10.20 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPN 80 VSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAPAGVDLDA 160 ENTEFGGIDPNIITNLQQFGFSTELIVRVLQREHIKSQEDLKDYPNGINGILDQLLH 240 .......P........................................................................ 80 ................................................................................ 160 ......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ SPBC2D10.20 5 --MSDNR|SR 0.096 . SPBC2D10.20 7 MSDNRSR|RI 0.107 . SPBC2D10.20 8 SDNRSRR|IA 0.647 *ProP* SPBC2D10.20 11 RSRRIAK|EL 0.248 . SPBC2D10.20 20 ADVQQDK|QA 0.104 . SPBC2D10.20 37 DDISHLK|GM 0.070 . SPBC2D10.20 41 HLKGMFR|GP 0.096 . SPBC2D10.20 66 PIDYPFR|PP 0.082 . SPBC2D10.20 69 YPFRPPK|MN 0.150 . SPBC2D10.20 75 KMNFDTK|IY 0.081 . SPBC2D10.20 94 ICLDILK|DQ 0.056 . SPBC2D10.20 104 SPVYTMK|SA 0.125 . SPBC2D10.20 140 NYQQFVR|TA 0.097 . SPBC2D10.20 143 QFVRTAR|EW 0.282 . SPBC2D10.20 188 STELIVR|VL 0.068 . SPBC2D10.20 192 IVRVLQR|EH 0.114 . SPBC2D10.20 196 LQREHIK|SQ 0.092 . SPBC2D10.20 202 KSQEDLK|DY 0.081 . ____________________________^_________________

  • Fasta :-

    >SPBC2D10.20 GTTCAATAAGTTACAGCATGATCATATTAAAAGCACGAAAGTGATGTCCTTTATCTATCG TCATTTAGTGCTGCTTAATAACAAAGCTATATCAAATTTGAAAATGCACTACTAATGTCA CAATTTTTTATTTTTTATTTTTTTATTGATCAAAATGTTGTTTTATGAATACAAAATTGA AAAATTAAAATAAAGACATGCATGTTTTCTGCAAATTTTGAGATCTTTGCCGTATTCAAC AGTCTATTAAATCGATCATTATATGAAGTATAGAAAATAAGACGGTTGCTACATCCTTAG CCCGAAGTTGTATTCAACACACAATATTAACTACTCAACACAATATGTCAGACAATCGTT CTCGTAGAATTGCTAAAGAACTTGCTGATGTTCAACAGGATAAGCAAGCAGGAATTCAAG TATGGACTATAAACGATGATATATCACATTTAAAAGGAATGTTTAGAGGTCCTGAGGGAA CTCCTTATGAGGGTGGCTACTTCGTCGTCGATATTGAAATTCCTATTGATTATCCATTTC GCCCCCCTAAAATGAATTTTGATACTAAAATTTATCATCCTAACGTTTCTTCCCAAACTG GAGCTATTTGTTTAGATATATTAAAGGATCAATGGTCACCGGTTTATACAATGAAATCAG CTTTAATAAGTTTACAATCACTTTTGTGCACTCCAGAGCCGTCAAATCCTCAAGATGCTC AGGTAGCTCAAGTGTATCTGCAAAACTACCAACAATTTGTCCGAACCGCCCGCGAATGGA CAAGTTCTTATGCTGCCGCACCTGCAGGAGTTGACTTAGATGCAGAAAATACAGAGTTTG GTGGAATTGATCCAAACATTATTACAAATCTACAGCAATTTGGATTTTCAACAGAGCTTA TAGTACGGGTTTTACAAAGGGAACACATAAAGAGCCAAGAAGATCTTAAGGACTATCCAA ACGGCATCAATGGGATTTTAGATCAGCTATTACATTAAGGAAATGCCTTCGTTTTAAAGA CTACATACATGTGAAGGCAAGAGCTAAATATTACTCAAATAAGAGTTATGAACACATTTT GCCATTCTTGGTAACTTTAATGATATACATTTTATTTGATATCAATCTCACATTAAATTT GATCGTTATTGATTGGAGGTACTATAGCTGTTTTGTTCTATTAAAATATCGAAAGATGTA TCATATATTTCACGTAACGTTATAAATGGAATGTCATTAGAGATTGATAGTGCGTTTAGT TGTCATAAGCACTATGCACGACGGATTTACAATTCATTAATATCGATATCAGTTGTCCCA CTATACAAAGAAGTCAACGGAGGGCGTCGAGAGGGGCTTAATGGTTTTATTGGAGATACA ACTTTTTTTTTGGGACTCGGACTGGGTACGTTTTCCTCATCATCACTATTTGGCGCTTGG ATCAATGTCGACTGTGGCCACAGTTTGCGTTTTGTATTTATAGTATGGGCTTCCTGAATA GCTTGTTTATCTTCATAAAGCAGTTTGCGAGATGATCTTTTATGCTGATTTTCATTTTGT TGTGTCGCCGAACTTTCTTTAATACTTTCCTCTTCAAGGCTTCGAAGTTCTTCATGTAAT TCTTCGATAATTTGTTCTAACTGCGCAATCGTTTCTGTTTTTTCGGAATTTTCATCTTGA AGTTTTTTCATCCATCCTCCCATTTTTTCTAGCTTTTGATCAGTGTATTCTATACCTTGG GCAGATTCTTCAAGCAATTTGGTCAGGAACGTGCGCTCCACCTCAGAAACGCGTTCTTCC ATTTCTCGGGTCATTTGTTGACGAATTTCATATTCCAAGTTCATCATCTCTGAATCTGCA TCAGCTAGAAGCATCCTTAATTGCTGATTTTCCTGTTGCAATTGTTCCAAGTGTGATGTT AAGGCTTTTGTGCTTGATGTATTTTTGGACTTCTGTAATAATGAATGCGAAGGAGATTGA GAGCCTGAATTTTCATTTAGGGGTGGAGGTAAAATTTCACGAGCATTGGCGCTGTACCTC ATTACTTGGGCATTTTCATCAAAGCTACCAAACGGATCAATATTTACAAGCATGTTAATT CCTGCCAGACCAGAAAGATGTCCAGAATGAAACAAAAGTTCTGTAAGTTTACTTTGGCGA AAGGGTATGATATGCTGTTTTCCTTCATGCTTTCTCCGAAGGGCTTCTAAACATTGCCCT AAAGTTAATAAGCTTCGATTGATACTTGCTCCTTCCCTAAGAAGTAGACCTGAAGTTTCT GCGGAACGTGTACGCTCGGATCCGGCTAAATCCACCAAATCTATTTGACAACTTTCAAAT TTATTGCTTTTGGTGCAAACTTTGAAGAGCTCAATGGACATGATTAGATGTGAGCGTGAA GAAACAGAATTGGATTTTGTAGAAGTAGATTTTCTAAGTTGTAAAACTTTTTGAATCAAT TTGTAAGCTTCAGTGGTGTTTGAAACGAACACTTTTTGAATTCCAGCAATTGATTTTTTA TCCGATGTCGAAGATTTCTTCAACGATAAGGCATGACGATGTCCAAAAAAGCTGGCCTTC TCTAGTAAATCGAAAATTCGGTCATTATAGATTTCCGCAAACGACAAGTAAATAGCATAC TGATAATTTTTCTCTTCGATTTTGGGAAAATGACTGGCATAATATTCAGTATTAGGTACC TTGATGTCCAACGGGGCTTCTCCTCTTAAAAATTTTGATGCTTCAACAATTTTGCATTTT TCAAGTTGAGAGCGTAAAAACTCGACTGTTTGGGGCTAAAATCGTCAGCATTAAATTCGT CATATTATATTTCAAAACGAGAATAGCAATGATTTAAAATAAAAAAAAGTCATCAGAAAG AAACATGTTTTGCTTAAAAATCGTCAATGGTATGTGTACTTACACTTGCCTCTCGTCCCT TGATAGCATAAAACAAGGCGTCTAATGCAAGGAACGCAACACCCGGACGATCTGAAGGAC CGAAAAGCGTATAAGTTTTACCTGCTCCCGATACACCAAGTGTAAACAACAAGGTATCGT TCATGTTTACCAAGGAATCCGCTATTAAAGGAGCGCAAATAGTAGAAAAGACATCGAGCT GTGTGCAAGAGGGAGGAAAGACTTTAGTAAAAGAAGCCTTTTCTAACGTTTTAGATTTGG AAACTCTGTAAGCATGTGAATCCTCGGGAGATTCCAGCAAAATTTCGTAATCGTTAAGCA CCGTAAGAAATCCATATTTATTTGAAGCGTCCGAACTCGGCTGTGCTTTTTTGACACGCA GAAAAATCTGAAATTGTCAGCAATTTTAAATAAAGGATTAGAAATTGCTTACCTGTATCA TTGGTCAATTTCAGAGTTTAAAGGGACTTAAAAGCAATCCTTTGTGTACAAGAATGATGG AAGTGTTGGAAGACAGTTGCTCACAGCACTTTGTTTTACTTCGTTACAATTGCGATGATT TCTGTAGAGCTCTTTATAGGAGAAAAAAATTAAGAGATCTTGAAATGTAATGTTCAATCT AGTTAAATAGATTATTTTTAGTGATTTAGAAAGAAAAAAAAAAGAATCAAGCATTAAGGA TGGACGAAATATATATTAGATAAAAAGAAAGAATAATTAGATGAACAAGTAAGAATTTTT CCTTGCCCATTTTTAATAAACCTAGCTTGAGAACGCGATTGAAGTCGGCTT
  • Download Fasta

  • Fasta :-

    MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIP IDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPS NPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAPAGVDLDAENTEFGGIDPNIITNLQQFG FSTELIVRVLQREHIKSQEDLKDYPNGINGILDQLLH

  • title: active site cysteine
  • coordinates: C89
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC2D10.2046 TGPEGTPYEG0.992unspSPBC2D10.20197 SEHIKSQEDL0.998unsp

SPBC2D10.20      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India