SPBC4C3.07 | translation initiation factor eIF3f

UniProt_ID: O43060

Computed_GO_Component_IDs: GO:0033290
Computed_GO_Components: eukaryotic 48S preinitiation complex
Computed_GO_Function_IDs: GO:0005515
Computed_GO_Functions: protein binding
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs: GO:0005737 GO:0005829 GO:0016282 GO:0005852 GO:0071540 GO:0071541
Curated_GO_Components: cytoplasm cytosol eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3e eukaryotic translation initiation factor 3 complex, eIF3m
Curated_GO_Function_IDs: GO:0004843 GO:0003743 GO:0031369
Curated_GO_Functions: thiol-dependent ubiquitin-specific protease activity translation initiation factor activity translation initiation factor binding
Curated_GO_Processes: cytoplasmic translational initiation formation of cytoplasmic translation initiation complex protein modification by small protein conjugation or removal translational initiation

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	SPBC4C3.07	OTHER	0.983992	0.000844	0.015164

No Results

Fasta :-
>SPBC4C3.07 MALGTKHVLHLTKPSSRSSPLNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGR EIEIKSCFAVPHNESSEQVEVEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQ NLYASPAEPGTAPLGTYPHPCVHLTVNTDVSSPLAIKTYVSSPVGITERLADSCAFVPTP FTIRDDEAVRSGLKAVAAPKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDG SSPANVAVGRYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVVYLANTLRTQVDIASRLNL LP
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/811 Sequence name : 811 Sequence length : 302 VALUES OF COMPUTED PARAMETERS Coef20 : 3.883 CoefTot : -0.382 ChDiff : -6 ZoneTo : 25 KR : 3 DE : 0 CleavSite : 19 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.976 1.488 0.134 0.571 MesoH : 0.054 0.450 -0.206 0.276 MuHd_075 : 21.595 8.611 5.446 4.764 MuHd_095 : 34.047 17.778 10.321 6.443 MuHd_100 : 37.653 16.773 10.964 6.534 MuHd_105 : 36.481 20.176 11.556 6.633 Hmax_075 : 12.017 8.400 -0.563 4.072 Hmax_095 : 8.575 8.600 1.543 2.599 Hmax_100 : 13.400 9.500 1.100 3.180 Hmax_105 : 10.500 5.833 1.100 2.220 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5001 0.4999 DFMC : 0.4367 0.5633 This protein is probably imported in chloroplast. f(Ser) = 0.1600 f(Arg) = 0.0400 CMi = 1.26984 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 302 SPBC4C3.07 MALGTKHVLHLTKPSSRSSPLNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80 VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPAEPGTAPLGTYPHPCVHLTVNTDVSSPLAIKTYV 160 SSPVGITERLADSCAFVPTPFTIRDDEAVRSGLKAVAAPKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDG 240 SSPANVAVGRYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVVYLANTLRTQVDIASRLNLLP 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC4C3.07 6 -MALGTK|HV 0.063 . SPBC4C3.07 13 HVLHLTK|PS 0.064 . SPBC4C3.07 17 LTKPSSR|SS 0.105 . SPBC4C3.07 39 ILDHSTR|KS 0.098 . SPBC4C3.07 40 LDHSTRK|SE 0.119 . SPBC4C3.07 46 KSENNQR|VI 0.125 . SPBC4C3.07 55 GTLLGTR|SE 0.090 . SPBC4C3.07 60 TRSEDGR|EI 0.143 . SPBC4C3.07 65 GREIEIK|SC 0.135 . SPBC4C3.07 87 VEMEYHR|AM 0.073 . SPBC4C3.07 95 MYHLHLK|AN 0.063 . SPBC4C3.07 99 HLKANPR|EV 0.129 . SPBC4C3.07 157 SSPLAIK|TY 0.057 . SPBC4C3.07 169 PVGITER|LA 0.085 . SPBC4C3.07 184 PTPFTIR|DD 0.112 . SPBC4C3.07 190 RDDEAVR|SG 0.092 . SPBC4C3.07 194 AVRSGLK|AV 0.062 . SPBC4C3.07 200 KAVAAPK|ND 0.058 . SPBC4C3.07 205 PKNDPSR|LA 0.107 . SPBC4C3.07 217 TDLQQLR|RS 0.076 . SPBC4C3.07 218 DLQQLRR|ST 0.190 . SPBC4C3.07 229 LLSMIER|VS 0.104 . SPBC4C3.07 250 ANVAVGR|YL 0.126 . SPBC4C3.07 254 VGRYLMK|CF 0.074 . SPBC4C3.07 269 EGQDFEK|IF 0.069 . SPBC4C3.07 289 YLANTLR|TQ 0.075 . SPBC4C3.07 297 QVDIASR|LN 0.061 . ____________________________^_________________

Fasta :-
>SPBC4C3.07 CACTTTCTTAAATGGTAAACCTTAGAAGTTAGGCGAAAAATAGTGTCTTCAATTTAACGA ATTCTATGAGACTGTAAACTAGTACAGTAAAATTATTATTGATTGGGGAACAATACCAGA TCTACCTACCTGAGAGTAGCCAACAACGTGAAAATTTTAAAAAATGGCTTTGGGGACTAA GCACGTACTCCATCTCACAAAACCGTCTTCCAGGTCAAGTCCTTTGAACATTGTCATTGA ACCAGCAGTGCTTTTTTCTATCCTTGACCATTCAACCCGGAAAAGTGAAAATAATCAACG TGTTATCGGTACACTTTTGGGAACACGTTCTGAAGATGGCCGAGAAATTGAGATTAAAAG TTGTTTTGCAGTTCCTCATAATGAGAGCAGTGAGCAGGTAGAAGTTGAAATGGAATATCA TCGTGCGATGTACCATTTACACCTCAAGGCTAACCCTCGTGAAGTTGTCGTTGGTTGGTA TGCTACTTCTCCTGATTTAGATGCTTTCAGTGCACTGATTCAAAATTTATATGCTTCTCC TGCTGAACCCGGAACTGCTCCACTAGGAACGTATCCTCATCCCTGTGTTCACCTTACTGT CAACACAGATGTTAGCAGTCCCCTTGCCATCAAGACTTACGTTTCTTCACCAGTAGGTAT TACAGAGCGCCTTGCTGACAGCTGTGCATTCGTCCCTACCCCTTTTACCATTCGTGATGA CGAGGCAGTCCGTTCTGGTTTGAAAGCTGTAGCTGCTCCTAAGAATGACCCATCTAGACT TGCTAGCCTATTCACAGATCTCCAGCAACTTCGAAGATCAACCTTGGAGCTTTTATCTAT GATTGAAAGAGTTTCCGATTATGTGCAAAACGTAATTGATGGTTCTTCGCCTGCTAATGT TGCTGTCGGTAGATATTTGATGAAGTGCTTTAGTTTAATTCCTTGCGTAGAAGGCCAAGA TTTTGAAAAAATTTTTTCATCACATCTTCAAGATGTTTTGGTTGTAGTTTATCTCGCAAA TACCTTACGTACTCAAGTGGATATTGCTTCCCGTCTTAATTTGCTTCCCTAAGCAATTGT TATAACCTAAAAAATCCGGACAATTTCTAACAGTTGTTCGATAGCCCTTTTTTCAAGTCA CCGTTATTTTATCCTTTTTTCACACTGGCTGTTAACCCTCAGTGGAAGCAACTGTCTTTA TCTCGTCATTCACCCATTTCGACATAGTTTGAGTAGCTTAGCTTGTCGGTAACTATTTAG TATTATACTATAATTGGTTTAGGTTAAACGTCTTATTAAATAAGAGAAAATTTTAAGTCA
Download Fasta

Fasta :-

MALGTKHVLHLTKPSSRSSPLNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGR EIEIKSCFAVPHNESSEQVEVEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQ NLYASPAEPGTAPLGTYPHPCVHLTVNTDVSSPLAIKTYVSSPVGITERLADSCAFVPTP FTIRDDEAVRSGLKAVAAPKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDG SSPANVAVGRYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVVYLANTLRTQVDIASRLNL LP

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	SPBC4C3.07	T	5	0.554	0.073	SPBC4C3.07	T	136	0.525	0.199	SPBC4C3.07	T	131	0.506	0.258	SPBC4C3.07	T	167	0.505	0.393	SPBC4C3.07	T	148	0.503	0.047

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	SPBC4C3.07	T	5	0.554	0.073	SPBC4C3.07	T	136	0.525	0.199	SPBC4C3.07	T	131	0.506	0.258	SPBC4C3.07	T	167	0.505	0.393	SPBC4C3.07	T	148	0.503	0.047

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	SPBC4C3.07	41 S	STRKSENNQ	0.992	unsp	SPBC4C3.07	41 S	STRKSENNQ	0.992	unsp	SPBC4C3.07	41 S	STRKSENNQ	0.992	unsp	SPBC4C3.07	19 S	SSRSSPLNI	0.997	unsp	SPBC4C3.07	37 S	ILDHSTRKS	0.994	unsp

SPBC4C3.07 | translation initiation factor eIF3f

ID's

UniProt_ID: O43060

GEO Functions

Computed_GO_Component_IDs: GO:0033290

Computed_GO_Components: eukaryotic 48S preinitiation complex

Computed_GO_Function_IDs: GO:0005515

Computed_GO_Functions: protein binding

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs: GO:0005737 GO:0005829 GO:0016282 GO:0005852 GO:0071540 GO:0071541

Curated_GO_Components: cytoplasm cytosol eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3e eukaryotic translation initiation factor 3 complex, eIF3m

Curated_GO_Function_IDs: GO:0004843 GO:0003743 GO:0031369

Curated_GO_Functions: thiol-dependent ubiquitin-specific protease activity translation initiation factor activity translation initiation factor binding

Curated_GO_Processes: cytoplasmic translational initiation formation of cytoplasmic translation initiation complex protein modification by small protein conjugation or removal translational initiation

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

SPBC4C3.07

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India