SPBC4C3.10c | 20S proteasome complex subunit beta 1 Pre3 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC4C3.10cOTHER0.9996200.0002880.000092
No Results

  • Fasta :-

    >SPBC4C3.10c MATTVKDTMNVDINAIKKGEIRMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQ LTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSA GLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFL KNAVALAMERDGSSGGTIRMVILNKDGMERKFFAIDTANPIPVFTH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/758 Sequence name : 758 Sequence length : 226 VALUES OF COMPUTED PARAMETERS Coef20 : 3.661 CoefTot : 0.028 ChDiff : -2 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.282 1.076 0.220 0.551 MesoH : -0.186 0.165 -0.284 0.247 MuHd_075 : 20.116 11.061 4.187 3.213 MuHd_095 : 32.020 21.625 10.216 6.710 MuHd_100 : 32.345 23.500 10.038 7.119 MuHd_105 : 24.040 19.140 7.646 5.574 Hmax_075 : 1.633 5.483 -3.169 1.680 Hmax_095 : 7.700 10.587 0.408 3.657 Hmax_100 : 8.000 15.300 0.899 4.900 Hmax_105 : 4.600 12.483 0.069 4.060 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7601 0.2399 DFMC : 0.8285 0.1715
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 226 SPBC4C3.10c MATTVKDTMNVDINAIKKGEIRMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVA 80 DLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIY 160 GFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGMERKFFAIDTANPIPVFTH 240 ................................................................................ 80 ................................................................................ 160 .................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC4C3.10c 6 -MATTVK|DT 0.072 . SPBC4C3.10c 17 VDINAIK|KG 0.062 . SPBC4C3.10c 18 DINAIKK|GE 0.114 . SPBC4C3.10c 22 IKKGEIR|MG 0.088 . SPBC4C3.10c 31 TTITALR|YK 0.100 . SPBC4C3.10c 33 ITALRYK|DG 0.063 . SPBC4C3.10c 43 ILAADSR|TT 0.084 . SPBC4C3.10c 53 GAYIANR|VT 0.089 . SPBC4C3.10c 57 ANRVTDK|LT 0.064 . SPBC4C3.10c 69 DNIWCCR|SG 0.140 . SPBC4C3.10c 84 TVADLLK|YY 0.061 . SPBC4C3.10c 91 YYLSMYR|IQ 0.073 . SPBC4C3.10c 115 EMCYQNK|NM 0.062 . SPBC4C3.10c 130 VAGYDEK|TG 0.064 . SPBC4C3.10c 146 LGGSLHK|QP 0.065 . SPBC4C3.10c 168 FCDANFR|EN 0.088 . SPBC4C3.10c 181 EAVEFLK|NA 0.060 . SPBC4C3.10c 190 VALAMER|DG 0.089 . SPBC4C3.10c 199 SSGGTIR|MV 0.132 . SPBC4C3.10c 205 RMVILNK|DG 0.062 . SPBC4C3.10c 210 NKDGMER|KF 0.087 . SPBC4C3.10c 211 KDGMERK|FF 0.086 . ____________________________^_________________

  • Fasta :-

    >SPBC4C3.10c CAGAATTTGGAACATCCCCTATCACCTCAATATTGCTTGGAATTCTGCTTCGCTAGAAAT GAAACATAACATGATACCTAATTCACAGTTTAGAAGATCCGTCGTAAGAAATTCTCGTAA ATATATATACATCATTCCAGGTCGAACTTCCAATATCTTCATTTTTTGTTAAAAGATCAT GGTCATATTATTTTCATTCTTCAATAGCTATGGTTTTTTTCATGTTATTTGCGTAAGTAA ACCAAATATAAGCAGTCGTCAAATATTAAGAAAACAAAATCTTCAGAAACCTTTTTAGTC CCAAACTTTTAGATTCTTTCATTCTTTCCTATGTTAATTTCTAGCTGAGCACTTTCAAGT TCAATCCATGGTTATAACTCTGTAGTCGGCTGTAACTTTTGATCAAAAATTTTTAATACT ATACCCTTATCTATAGTCGTTAAAGAATTTCTTAAAAAATATACGAATTCTTTCAACACT TTTTACAATTGAATAACAATTTTTTATATTCATACTGCAATTTCATATGCAGGTAGCAAT GTTACCTAAATTTTGGCTGCTTCTCAATACCATACACAAGTCCCTAATCATTTTAACCTT TCACCAAACTTCTGAAAATGGCCACTACTGTGAAAGATACTATGAATGTTGACATTAATG CTATTAAAAAGGGAGAAATTCGTATGGGTACCACCATCACGGCGCTCCGTTATAAAGATG GCGTTATACTTGCTGCAGATTCTCGAACAACTATGGGTGCATATATTGCAAATCGTGTCA CTGATAAGCTGACTCAGCTGACAGACAATATTTGGTGCTGTCGCAGTGGTTCTGCTGCTG ATACGCAAACTGTGGCTGATCTTCTAAAATACTATCTTTCCATGTATCGTATTCAATTTG GCCATGACCCTAGTGTTCATACAGCTGCTACTTTAGCTTCTGAAATGTGTTATCAAAACA AAAATATGCTTAGTGCAGGTTTAATTGTTGCTGGATATGATGAAAAAACTGGGGGAGATG TTTACAGTATTCCGTTAGGTGGTAGTTTGCATAAGCAACCTTTAGCTATTGGAGGAAGTG GTTCTGCTTTTATTTATGGATTTTGCGATGCTAACTTTCGCGAAAATATGACCCAAGAGG AGGCTGTTGAATTTTTAAAGAACGCTGTTGCTTTAGCCATGGAACGCGATGGCAGCAGTG GTGGTACCATTCGAATGGTCATTTTAAATAAAGATGGAATGGAGCGTAAATTTTTTGCCA TTGATACTGCTAACCCTATTCCCGTATTTACTCACTAAGTACTTCACGTTTCCTTTTATT TTACGTGACTATACTGATACCCAATGCTTATGCTAGACTTGACCTTATTAATGCCTGTCT CATTATTTGTAGCTTTTGGAGTGCAAGGTCATGAAGAAAAGTTACTTTTCTGGTCAGTGA GATAAGTCTTTGTGATGATTAAAATAGAAAGATTTTTTATAGTTACAGTTAACTACCGAA GTGTAGTTATATTGTTGATAGTGAAAGAATATTATTGTTATGAGTCCTATGTAA
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  • Fasta :-

    MATTVKDTMNVDINAIKKGEIRMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQ LTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSA GLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFL KNAVALAMERDGSSGGTIRMVILNKDGMERKFFAIDTANPIPVFTH

  • title: active site
  • coordinates: T25,D41,R43,K57,S154,D191,S194,G195
IDSitePositionGscoreIscore
SPBC4C3.10cT2250.5280.078
IDSitePositionGscoreIscore
SPBC4C3.10cT2250.5280.078
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC4C3.10c4 T#NAME?0.991unspSPBC4C3.10c193 SERDGSSGGT0.991unsp

SPBC4C3.10c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India