SPBC4F6.17c | mitochondrial heatshock protein Hsp78 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC4F6.17cmTP0.3412390.0000290.658732CS pos: 71-72. RFY-AA. Pr: 0.4818
No Results

  • Fasta :-

    >SPBC4F6.17c MNILPKSIPIRIQSLRRYQGSLKTSLRALSTRPIFEKRLLAETPFSIRPSNASVLIAKRS PKFGWKQVRFYAANPNGGNFRMDLGGGRKQGAALEEYGTDLTALAKQGKLDPVIGREEEI QRTIQILSRRTKNNPALVGPAGVGKTAIMEGLASRIIRGEVPESMKDKRVIVLDLGALIS GAKFRGDFEERLKSVLSDLEGAEGKVILFVDEMHLLLGFGKAEGSIDASNLLKPALARGK LHCCGATTLEEYRKYIEKDAALARRFQAVMVNEPSVADTISILRGLKERYEVHHGVRITD DALVTAATYSARYITDRFLPDKAIDLVDEACSSLRLQQESKPDELRRLDRQIMTIQIELE SLRKETDTTSVERREKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTELEQARIELE RTQREGNYARASELQYAIIPELERSVPKEEKTLEEKKPSMVHDSVTSDDIAVVVSRATGI PTTNLMRGERDKLLNMEQTIGKKIIGQDEALKAIADAVRLSRAGLQNTNRPLASFLFLGP TGVGKTALTKALAEFLFDTDKAMIRFDMSEFQEKHTIARLIGSPPGYIGYEESGELTEAV RRKPYAVLLFDELEKAHHDITNLLLQVLDEGFLTDSQGRKVDFRSTLIVMTSNLGSDILV ADPSTTVTPKSRDAVMDVVQKYYPPEFLNRIDDQIVFNKLSEKNLEDIVNVRLDEVQQRL NDRRIILTVTEAARKWLAEKGYSPAYGARPLNRLIQKRILNTMAMKIIQGEIKSDENVVI DVLDGELEFKANKLEPQSTSHED
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/783 Sequence name : 783 Sequence length : 803 VALUES OF COMPUTED PARAMETERS Coef20 : 4.105 CoefTot : 0.150 ChDiff : 0 ZoneTo : 35 KR : 7 DE : 0 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.259 1.324 0.079 0.534 MesoH : -0.858 0.389 -0.460 0.198 MuHd_075 : 42.687 15.942 10.047 8.217 MuHd_095 : 34.029 22.680 8.731 8.455 MuHd_100 : 42.635 25.157 10.675 9.922 MuHd_105 : 44.005 27.681 11.065 10.609 Hmax_075 : 10.850 9.450 1.672 2.998 Hmax_095 : 11.700 15.800 1.291 4.300 Hmax_100 : 11.700 12.300 1.868 4.300 Hmax_105 : 13.000 15.600 2.602 5.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0335 0.9665 DFMC : 0.0237 0.9763 This protein is probably imported in mitochondria. f(Ser) = 0.1429 f(Arg) = 0.1429 CMi = 0.52910 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 803 SPBC4F6.17c MNILPKSIPIRIQSLRRYQGSLKTSLRALSTRPIFEKRLLAETPFSIRPSNASVLIAKRSPKFGWKQVRFYAANPNGGNF 80 RMDLGGGRKQGAALEEYGTDLTALAKQGKLDPVIGREEEIQRTIQILSRRTKNNPALVGPAGVGKTAIMEGLASRIIRGE 160 VPESMKDKRVIVLDLGALISGAKFRGDFEERLKSVLSDLEGAEGKVILFVDEMHLLLGFGKAEGSIDASNLLKPALARGK 240 LHCCGATTLEEYRKYIEKDAALARRFQAVMVNEPSVADTISILRGLKERYEVHHGVRITDDALVTAATYSARYITDRFLP 320 DKAIDLVDEACSSLRLQQESKPDELRRLDRQIMTIQIELESLRKETDTTSVERREKLESKLTDLKEEQDKLSAAWEEERK 400 LLDSIKKAKTELEQARIELERTQREGNYARASELQYAIIPELERSVPKEEKTLEEKKPSMVHDSVTSDDIAVVVSRATGI 480 PTTNLMRGERDKLLNMEQTIGKKIIGQDEALKAIADAVRLSRAGLQNTNRPLASFLFLGPTGVGKTALTKALAEFLFDTD 560 KAMIRFDMSEFQEKHTIARLIGSPPGYIGYEESGELTEAVRRKPYAVLLFDELEKAHHDITNLLLQVLDEGFLTDSQGRK 640 VDFRSTLIVMTSNLGSDILVADPSTTVTPKSRDAVMDVVQKYYPPEFLNRIDDQIVFNKLSEKNLEDIVNVRLDEVQQRL 720 NDRRIILTVTEAARKWLAEKGYSPAYGARPLNRLIQKRILNTMAMKIIQGEIKSDENVVIDVLDGELEFKANKLEPQSTS 800 HED 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC4F6.17c 6 -MNILPK|SI 0.087 . SPBC4F6.17c 11 PKSIPIR|IQ 0.110 . SPBC4F6.17c 16 IRIQSLR|RY 0.120 . SPBC4F6.17c 17 RIQSLRR|YQ 0.147 . SPBC4F6.17c 23 RYQGSLK|TS 0.060 . SPBC4F6.17c 27 SLKTSLR|AL 0.102 . SPBC4F6.17c 32 LRALSTR|PI 0.135 . SPBC4F6.17c 37 TRPIFEK|RL 0.069 . SPBC4F6.17c 38 RPIFEKR|LL 0.184 . SPBC4F6.17c 48 ETPFSIR|PS 0.077 . SPBC4F6.17c 58 ASVLIAK|RS 0.060 . SPBC4F6.17c 59 SVLIAKR|SP 0.197 . SPBC4F6.17c 62 IAKRSPK|FG 0.207 . SPBC4F6.17c 66 SPKFGWK|QV 0.077 . SPBC4F6.17c 69 FGWKQVR|FY 0.125 . SPBC4F6.17c 81 PNGGNFR|MD 0.098 . SPBC4F6.17c 88 MDLGGGR|KQ 0.091 . SPBC4F6.17c 89 DLGGGRK|QG 0.071 . SPBC4F6.17c 106 DLTALAK|QG 0.055 . SPBC4F6.17c 109 ALAKQGK|LD 0.068 . SPBC4F6.17c 116 LDPVIGR|EE 0.096 . SPBC4F6.17c 122 REEEIQR|TI 0.073 . SPBC4F6.17c 129 TIQILSR|RT 0.079 . SPBC4F6.17c 130 IQILSRR|TK 0.094 . SPBC4F6.17c 132 ILSRRTK|NN 0.138 . SPBC4F6.17c 145 GPAGVGK|TA 0.086 . SPBC4F6.17c 155 MEGLASR|II 0.098 . SPBC4F6.17c 158 LASRIIR|GE 0.273 . SPBC4F6.17c 166 EVPESMK|DK 0.066 . SPBC4F6.17c 168 PESMKDK|RV 0.089 . SPBC4F6.17c 169 ESMKDKR|VI 0.164 . SPBC4F6.17c 183 ALISGAK|FR 0.070 . SPBC4F6.17c 185 ISGAKFR|GD 0.132 . SPBC4F6.17c 191 RGDFEER|LK 0.074 . SPBC4F6.17c 193 DFEERLK|SV 0.076 . SPBC4F6.17c 205 LEGAEGK|VI 0.065 . SPBC4F6.17c 221 LLLGFGK|AE 0.067 . SPBC4F6.17c 233 DASNLLK|PA 0.070 . SPBC4F6.17c 238 LKPALAR|GK 0.087 . SPBC4F6.17c 240 PALARGK|LH 0.060 . SPBC4F6.17c 253 TTLEEYR|KY 0.079 . SPBC4F6.17c 254 TLEEYRK|YI 0.100 . SPBC4F6.17c 258 YRKYIEK|DA 0.082 . SPBC4F6.17c 264 KDAALAR|RF 0.101 . SPBC4F6.17c 265 DAALARR|FQ 0.136 . SPBC4F6.17c 284 DTISILR|GL 0.068 . SPBC4F6.17c 287 SILRGLK|ER 0.090 . SPBC4F6.17c 289 LRGLKER|YE 0.102 . SPBC4F6.17c 297 EVHHGVR|IT 0.128 . SPBC4F6.17c 312 AATYSAR|YI 0.107 . SPBC4F6.17c 317 ARYITDR|FL 0.116 . SPBC4F6.17c 322 DRFLPDK|AI 0.073 . SPBC4F6.17c 335 EACSSLR|LQ 0.077 . SPBC4F6.17c 341 RLQQESK|PD 0.060 . SPBC4F6.17c 346 SKPDELR|RL 0.105 . SPBC4F6.17c 347 KPDELRR|LD 0.155 . SPBC4F6.17c 350 ELRRLDR|QI 0.401 . SPBC4F6.17c 363 IELESLR|KE 0.070 . SPBC4F6.17c 364 ELESLRK|ET 0.071 . SPBC4F6.17c 373 DTTSVER|RE 0.062 . SPBC4F6.17c 374 TTSVERR|EK 0.186 . SPBC4F6.17c 376 SVERREK|LE 0.108 . SPBC4F6.17c 380 REKLESK|LT 0.069 . SPBC4F6.17c 385 SKLTDLK|EE 0.058 . SPBC4F6.17c 390 LKEEQDK|LS 0.065 . SPBC4F6.17c 399 AAWEEER|KL 0.080 . SPBC4F6.17c 400 AWEEERK|LL 0.077 . SPBC4F6.17c 406 KLLDSIK|KA 0.076 . SPBC4F6.17c 407 LLDSIKK|AK 0.097 . SPBC4F6.17c 409 DSIKKAK|TE 0.065 . SPBC4F6.17c 416 TELEQAR|IE 0.079 . SPBC4F6.17c 421 ARIELER|TQ 0.091 . SPBC4F6.17c 424 ELERTQR|EG 0.176 . SPBC4F6.17c 430 REGNYAR|AS 0.110 . SPBC4F6.17c 444 IIPELER|SV 0.185 . SPBC4F6.17c 448 LERSVPK|EE 0.065 . SPBC4F6.17c 451 SVPKEEK|TL 0.073 . SPBC4F6.17c 456 EKTLEEK|KP 0.060 . SPBC4F6.17c 457 KTLEEKK|PS 0.082 . SPBC4F6.17c 476 IAVVVSR|AT 0.114 . SPBC4F6.17c 487 PTTNLMR|GE 0.086 . SPBC4F6.17c 490 NLMRGER|DK 0.206 . SPBC4F6.17c 492 MRGERDK|LL 0.075 . SPBC4F6.17c 502 MEQTIGK|KI 0.069 . SPBC4F6.17c 503 EQTIGKK|II 0.105 . SPBC4F6.17c 512 GQDEALK|AI 0.067 . SPBC4F6.17c 519 AIADAVR|LS 0.096 . SPBC4F6.17c 522 DAVRLSR|AG 0.168 . SPBC4F6.17c 530 GLQNTNR|PL 0.089 . SPBC4F6.17c 545 GPTGVGK|TA 0.068 . SPBC4F6.17c 550 GKTALTK|AL 0.067 . SPBC4F6.17c 561 FLFDTDK|AM 0.060 . SPBC4F6.17c 565 TDKAMIR|FD 0.097 . SPBC4F6.17c 574 MSEFQEK|HT 0.076 . SPBC4F6.17c 579 EKHTIAR|LI 0.114 . SPBC4F6.17c 601 ELTEAVR|RK 0.067 . SPBC4F6.17c 602 LTEAVRR|KP 0.112 . SPBC4F6.17c 603 TEAVRRK|PY 0.116 . SPBC4F6.17c 615 LFDELEK|AH 0.061 . SPBC4F6.17c 639 LTDSQGR|KV 0.087 . SPBC4F6.17c 640 TDSQGRK|VD 0.084 . SPBC4F6.17c 644 GRKVDFR|ST 0.194 . SPBC4F6.17c 670 STTVTPK|SR 0.097 . SPBC4F6.17c 672 TVTPKSR|DA 0.121 . SPBC4F6.17c 681 VMDVVQK|YY 0.065 . SPBC4F6.17c 690 PPEFLNR|ID 0.108 . SPBC4F6.17c 699 DQIVFNK|LS 0.071 . SPBC4F6.17c 703 FNKLSEK|NL 0.071 . SPBC4F6.17c 712 EDIVNVR|LD 0.088 . SPBC4F6.17c 719 LDEVQQR|LN 0.084 . SPBC4F6.17c 723 QQRLNDR|RI 0.081 . SPBC4F6.17c 724 QRLNDRR|II 0.154 . SPBC4F6.17c 734 TVTEAAR|KW 0.082 . SPBC4F6.17c 735 VTEAARK|WL 0.075 . SPBC4F6.17c 740 RKWLAEK|GY 0.077 . SPBC4F6.17c 749 SPAYGAR|PL 0.108 . SPBC4F6.17c 753 GARPLNR|LI 0.110 . SPBC4F6.17c 757 LNRLIQK|RI 0.065 . SPBC4F6.17c 758 NRLIQKR|IL 0.196 . SPBC4F6.17c 766 LNTMAMK|II 0.068 . SPBC4F6.17c 773 IIQGEIK|SD 0.091 . SPBC4F6.17c 790 DGELEFK|AN 0.058 . SPBC4F6.17c 793 LEFKANK|LE 0.057 . ____________________________^_________________

  • Fasta :-

    >SPBC4F6.17c TAATTCTTTAGTTAGCCGACACTTTATAGATTCATATATATATATATAAGCAGTAGGTAA GAAAATGAGAAGATTTCGCAAACCATGAATATTTTACCTAAGAGTATTCCGATACGAATA CAATCGCTCCGTAGGTACCAAGGAAGTTTAAAAACTTCTCTTCGGGCATTGAGTACTCGA CCCATTTTTGAAAAACGGCTGTTAGCTGAAACACCATTTTCTATAAGACCAAGTAATGCT TCTGTACTCATAGCTAAGAGATCTCCAAAGTTTGGATGGAAGCAAGTACGCTTTTATGCA GCAAATCCAAATGGAGGAAATTTTCGAATGGATTTAGGCGGCGGACGCAAACAAGGAGCC GCTTTGGAAGAATATGGCACAGACTTAACAGCCTTGGCTAAACAAGGAAAATTGGATCCT GTAATTGGGCGTGAAGAAGAGATTCAAAGAACCATCCAAATTCTCTCTCGACGCACAAAG AATAATCCTGCGTTAGTTGGTCCGGCTGGTGTAGGTAAAACAGCAATTATGGAGGGATTA GCCTCGCGAATCATTCGTGGAGAGGTCCCTGAGTCCATGAAGGATAAACGTGTTATTGTC CTAGATTTAGGCGCTCTCATTTCAGGAGCCAAATTTCGGGGAGATTTTGAGGAACGTTTA AAATCTGTACTGAGTGACCTGGAAGGAGCTGAAGGAAAGGTCATTTTGTTTGTTGATGAA ATGCACCTTTTACTTGGCTTTGGTAAAGCTGAAGGCTCAATTGATGCCAGCAATCTATTA AAACCTGCTTTAGCCCGTGGTAAATTGCACTGTTGTGGTGCGACAACCTTGGAGGAATAC AGAAAATACATCGAGAAAGACGCTGCTTTGGCAAGAAGATTTCAAGCAGTTATGGTAAAT GAACCTTCTGTAGCTGACACCATCTCAATTCTTCGTGGTCTGAAAGAACGATACGAAGTT CATCATGGTGTACGTATCACTGACGATGCTTTGGTAACAGCAGCTACGTACAGCGCTAGA TACATCACCGATCGATTTCTTCCCGATAAAGCCATTGATTTAGTCGATGAAGCCTGCTCC TCTCTTCGCTTACAACAAGAGTCTAAACCTGATGAATTGCGGCGTTTAGACCGTCAAATC ATGACTATACAAATTGAATTGGAATCCCTTAGGAAGGAAACTGACACGACATCGGTTGAG CGACGTGAGAAATTGGAGTCCAAGCTCACTGATTTGAAGGAGGAACAAGATAAACTATCT GCGGCATGGGAAGAAGAGAGAAAGCTTTTGGACTCCATCAAGAAGGCTAAAACTGAACTT GAACAGGCTCGAATAGAGCTTGAGAGAACACAACGTGAAGGTAATTATGCCCGTGCTTCT GAGCTCCAATATGCGATTATTCCTGAATTGGAGCGTAGTGTTCCAAAGGAAGAGAAAACG CTTGAAGAAAAGAAGCCATCCATGGTACATGATTCGGTTACTAGCGATGATATTGCGGTT GTTGTATCAAGGGCGACAGGAATTCCTACCACTAATTTAATGCGTGGTGAAAGAGACAAG CTCCTTAATATGGAACAAACTATTGGCAAGAAGATTATTGGTCAGGACGAAGCTTTGAAA GCGATAGCCGATGCAGTTCGTTTATCACGCGCAGGTCTCCAAAACACCAACAGACCTTTG GCATCATTCCTTTTCCTTGGACCTACCGGTGTAGGTAAGACTGCACTTACCAAAGCTTTA GCAGAGTTTCTATTTGACACTGACAAGGCTATGATTCGTTTTGATATGTCCGAGTTTCAG GAGAAACATACAATTGCGCGTCTGATTGGTAGTCCTCCTGGATATATTGGTTATGAAGAA TCTGGAGAGTTGACTGAAGCTGTGCGTCGCAAACCATACGCCGTACTTTTGTTTGACGAA TTAGAAAAAGCGCATCATGATATTACCAACCTTCTTCTACAAGTACTAGACGAAGGATTT TTGACCGATTCACAAGGACGTAAAGTGGATTTCCGATCTACCTTGATTGTTATGACCTCG AATTTGGGAAGCGATATCTTGGTTGCTGATCCTAGTACTACTGTCACCCCCAAATCCAGG GATGCCGTTATGGATGTTGTACAGAAATATTATCCTCCTGAATTTTTGAACAGAATTGAC GACCAAATTGTTTTCAACAAATTATCGGAAAAGAACCTTGAAGACATAGTAAACGTTCGT TTGGACGAAGTTCAACAACGTCTTAATGACCGTCGTATAATCCTTACAGTTACAGAAGCA GCTCGCAAATGGCTTGCTGAAAAAGGTTATTCTCCAGCGTATGGCGCTAGACCTTTGAAT CGCTTAATACAGAAGCGTATTTTGAACACAATGGCGATGAAAATTATTCAGGGAGAAATT AAGTCGGACGAAAATGTTGTGATCGACGTTTTGGATGGTGAACTTGAGTTTAAAGCAAAT AAGCTTGAGCCACAATCTACAAGTCATGAGGATTAATGTTATTATGAAAACCTTCTATCT GATAATTTCTTTATTATCTTAGTGATGACCATATTGAATAGCGGCTTTAAATATTTTACG CAATTATTTATTATCATTTTTATTTATTCAAA
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  • Fasta :-

    MNILPKSIPIRIQSLRRYQGSLKTSLRALSTRPIFEKRLLAETPFSIRPSNASVLIAKRS PKFGWKQVRFYAANPNGGNFRMDLGGGRKQGAALEEYGTDLTALAKQGKLDPVIGREEEI QRTIQILSRRTKNNPALVGPAGVGKTAIMEGLASRIIRGEVPESMKDKRVIVLDLGALIS GAKFRGDFEERLKSVLSDLEGAEGKVILFVDEMHLLLGFGKAEGSIDASNLLKPALARGK LHCCGATTLEEYRKYIEKDAALARRFQAVMVNEPSVADTISILRGLKERYEVHHGVRITD DALVTAATYSARYITDRFLPDKAIDLVDEACSSLRLQQESKPDELRRLDRQIMTIQIELE SLRKETDTTSVERREKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTELEQARIELE RTQREGNYARASELQYAIIPELERSVPKEEKTLEEKKPSMVHDSVTSDDIAVVVSRATGI PTTNLMRGERDKLLNMEQTIGKKIIGQDEALKAIADAVRLSRAGLQNTNRPLASFLFLGP TGVGKTALTKALAEFLFDTDKAMIRFDMSEFQEKHTIARLIGSPPGYIGYEESGELTEAV RRKPYAVLLFDELEKAHHDITNLLLQVLDEGFLTDSQGRKVDFRSTLIVMTSNLGSDILV ADPSTTVTPKSRDAVMDVVQKYYPPEFLNRIDDQIVFNKLSEKNLEDIVNVRLDEVQQRL NDRRIILTVTEAARKWLAEKGYSPAYGARPLNRLIQKRILNTMAMKIIQGEIKSDENVVI DVLDGELEFKANKLEPQSTSHED

  • title: ATP binding site
  • coordinates: P540,T541,G542,V543,G544,K545,T546,A547,D611,N653
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC4F6.17c370 STDTTSVERR0.992unspSPBC4F6.17c370 STDTTSVERR0.992unspSPBC4F6.17c370 STDTTSVERR0.992unspSPBC4F6.17c404 SKLLDSIKKA0.994unspSPBC4F6.17c800 SPQSTSHED-0.995unspSPBC4F6.17c30 SLRALSTRPI0.994unspSPBC4F6.17c164 SEVPESMKDK0.998unsp

SPBC4F6.17c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India