SPBC543.09 | mitochondrial m-AAA protease Yta12 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC543.09OTHER0.6844570.0001640.315380
No Results

  • Fasta :-

    >SPBC543.09 MRNPFLTFRAPTRKTGDYLVSKFVKKDNFSSLRLARAYTFSTRSTAVSQFSLLSLSQRSF QSLKINKGIPEKHKIPLISSKQFSVTSKRSQNGSSGSNSDANGRKNGQKNDDSKKKGLNG NDPKKVFEIALNGNTILGGILVAYILYNVLSPNANMQEITWQDFRQQFLDKGLVERLVVV NRNMVRVILRGGVASGSGQYYFSIGSIDSFDRKLEDAQRQLGIPPSEFVPVAYHDEVSVL ATLLSFAPTLLIIGSVIYLSRRASGAAGGGQGGIFGIGKSRAKMFNHETDIKIKFADVAG VDEAKEEIMEFVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSV SGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTL NQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHL KHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQAIERVT AGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVDPLLKVSIIPRAQALGYASYLPKDQ YLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYVTQYGMSPTVG TIAYPIDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLENIAQRLLQK EVITYNEVETILGPRPYAYKHLNISELMRQSEYKNDHDPRNPPIPPSPQQPSA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/226 Sequence name : 226 Sequence length : 773 VALUES OF COMPUTED PARAMETERS Coef20 : 4.177 CoefTot : -0.335 ChDiff : 17 ZoneTo : 16 KR : 4 DE : 0 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.100 2.247 0.389 0.769 MesoH : -0.105 0.536 -0.214 0.299 MuHd_075 : 34.031 17.688 8.166 6.312 MuHd_095 : 43.483 10.240 8.905 7.034 MuHd_100 : 43.555 12.097 8.556 7.442 MuHd_105 : 32.801 9.748 5.967 6.113 Hmax_075 : 14.583 9.333 1.072 4.235 Hmax_095 : 14.000 4.100 0.533 3.540 Hmax_100 : 14.000 4.100 0.533 3.540 Hmax_105 : -0.350 -2.900 -3.401 0.790 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5623 0.4377 DFMC : 0.4445 0.5555 This protein is probably imported in mitochondria. f(Ser) = 0.0000 f(Arg) = 0.1875 CMi = 0.00000 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 773 SPBC543.09 MRNPFLTFRAPTRKTGDYLVSKFVKKDNFSSLRLARAYTFSTRSTAVSQFSLLSLSQRSFQSLKINKGIPEKHKIPLISS 80 KQFSVTSKRSQNGSSGSNSDANGRKNGQKNDDSKKKGLNGNDPKKVFEIALNGNTILGGILVAYILYNVLSPNANMQEIT 160 WQDFRQQFLDKGLVERLVVVNRNMVRVILRGGVASGSGQYYFSIGSIDSFDRKLEDAQRQLGIPPSEFVPVAYHDEVSVL 240 ATLLSFAPTLLIIGSVIYLSRRASGAAGGGQGGIFGIGKSRAKMFNHETDIKIKFADVAGVDEAKEEIMEFVKFLKNPKF 320 YERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAI 400 GKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHL 480 KHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVAH 560 HEAGHAVAGWFMEYVDPLLKVSIIPRAQALGYASYLPKDQYLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQ 640 KVTRMAQAYVTQYGMSPTVGTIAYPIDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLENIAQRLLQK 720 EVITYNEVETILGPRPYAYKHLNISELMRQSEYKNDHDPRNPPIPPSPQQPSA 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ..................................................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC543.09 2 -----MR|NP 0.077 . SPBC543.09 9 NPFLTFR|AP 0.085 . SPBC543.09 13 TFRAPTR|KT 0.156 . SPBC543.09 14 FRAPTRK|TG 0.088 . SPBC543.09 22 GDYLVSK|FV 0.084 . SPBC543.09 25 LVSKFVK|KD 0.063 . SPBC543.09 26 VSKFVKK|DN 0.145 . SPBC543.09 33 DNFSSLR|LA 0.096 . SPBC543.09 36 SSLRLAR|AY 0.303 . SPBC543.09 43 AYTFSTR|ST 0.132 . SPBC543.09 58 LLSLSQR|SF 0.125 . SPBC543.09 64 RSFQSLK|IN 0.063 . SPBC543.09 67 QSLKINK|GI 0.065 . SPBC543.09 72 NKGIPEK|HK 0.066 . SPBC543.09 74 GIPEKHK|IP 0.061 . SPBC543.09 81 IPLISSK|QF 0.068 . SPBC543.09 88 QFSVTSK|RS 0.069 . SPBC543.09 89 FSVTSKR|SQ 0.263 . SPBC543.09 104 NSDANGR|KN 0.104 . SPBC543.09 105 SDANGRK|NG 0.081 . SPBC543.09 109 GRKNGQK|ND 0.071 . SPBC543.09 114 QKNDDSK|KK 0.076 . SPBC543.09 115 KNDDSKK|KG 0.082 . SPBC543.09 116 NDDSKKK|GL 0.124 . SPBC543.09 124 LNGNDPK|KV 0.080 . SPBC543.09 125 NGNDPKK|VF 0.124 . SPBC543.09 165 ITWQDFR|QQ 0.070 . SPBC543.09 171 RQQFLDK|GL 0.069 . SPBC543.09 176 DKGLVER|LV 0.110 . SPBC543.09 182 RLVVVNR|NM 0.081 . SPBC543.09 186 VNRNMVR|VI 0.093 . SPBC543.09 190 MVRVILR|GG 0.096 . SPBC543.09 212 SIDSFDR|KL 0.123 . SPBC543.09 213 IDSFDRK|LE 0.102 . SPBC543.09 219 KLEDAQR|QL 0.092 . SPBC543.09 261 SVIYLSR|RA 0.108 . SPBC543.09 262 VIYLSRR|AS 0.208 . SPBC543.09 279 GIFGIGK|SR 0.084 . SPBC543.09 281 FGIGKSR|AK 0.081 . SPBC543.09 283 IGKSRAK|MF 0.068 . SPBC543.09 292 NHETDIK|IK 0.061 . SPBC543.09 294 ETDIKIK|FA 0.089 . SPBC543.09 305 AGVDEAK|EE 0.062 . SPBC543.09 313 EIMEFVK|FL 0.060 . SPBC543.09 316 EFVKFLK|NP 0.057 . SPBC543.09 319 KFLKNPK|FY 0.065 . SPBC543.09 323 NPKFYER|LG 0.087 . SPBC543.09 327 YERLGAK|IP 0.063 . SPBC543.09 330 LGAKIPR|GA 0.147 . SPBC543.09 342 GPPGTGK|TL 0.062 . SPBC543.09 347 GKTLLAK|AT 0.068 . SPBC543.09 376 VGVGPSR|VR 0.065 . SPBC543.09 378 VGPSRVR|DL 0.085 . SPBC543.09 385 DLFATAR|KN 0.084 . SPBC543.09 386 LFATARK|NA 0.082 . SPBC543.09 402 EIDAIGK|AR 0.066 . SPBC543.09 404 DAIGKAR|GR 0.169 . SPBC543.09 406 IGKARGR|GG 0.082 . SPBC543.09 416 FGSNDER|ES 0.079 . SPBC543.09 444 VFAGTNR|PD 0.065 . SPBC543.09 454 LDPALLR|PG 0.067 . SPBC543.09 457 ALLRPGR|FD 0.248 . SPBC543.09 460 RPGRFDR|QI 0.429 . SPBC543.09 466 RQITIDR|PD 0.093 . SPBC543.09 472 RPDIGGR|EQ 0.082 . SPBC543.09 477 GREQIFK|VH 0.064 . SPBC543.09 481 IFKVHLK|HI 0.074 . SPBC543.09 484 VHLKHIK|AA 0.073 . SPBC543.09 494 NIDLIAK|RL 0.058 . SPBC543.09 495 IDLIAKR|LA 0.099 . SPBC543.09 521 GALIAAR|SN 0.165 . SPBC543.09 538 FEQAIER|VT 0.084 . SPBC543.09 545 VTAGLEK|KS 0.058 . SPBC543.09 546 TAGLEKK|SR 0.110 . SPBC543.09 548 GLEKKSR|VL 0.142 . SPBC543.09 555 VLSPEEK|NT 0.066 . SPBC543.09 580 YVDPLLK|VS 0.050 . SPBC543.09 586 KVSIIPR|AQ 0.095 . SPBC543.09 598 YASYLPK|DQ 0.074 . SPBC543.09 605 DQYLMSR|GQ 0.088 . SPBC543.09 619 GMALAGR|VS 0.106 . SPBC543.09 630 IFFGPEK|IT 0.071 . SPBC543.09 641 ASDDFQK|VT 0.067 . SPBC543.09 644 DFQKVTR|MA 0.138 . SPBC543.09 669 AYPIDTR|ET 0.080 . SPBC543.09 674 TRETVQK|PF 0.110 . SPBC543.09 689 MIDEEIR|KL 0.073 . SPBC543.09 690 IDEEIRK|LV 0.088 . SPBC543.09 693 EIRKLVK|HA 0.064 . SPBC543.09 698 VKHAYER|TK 0.077 . SPBC543.09 700 HAYERTK|KL 0.065 . SPBC543.09 701 AYERTKK|LL 0.192 . SPBC543.09 707 KLLLEHK|QG 0.057 . SPBC543.09 716 LENIAQR|LL 0.101 . SPBC543.09 720 AQRLLQK|EV 0.078 . SPBC543.09 735 ETILGPR|PY 0.071 . SPBC543.09 740 PRPYAYK|HL 0.077 . SPBC543.09 749 NISELMR|QS 0.118 . SPBC543.09 754 MRQSEYK|ND 0.079 . SPBC543.09 760 KNDHDPR|NP 0.076 . ____________________________^_________________

  • Fasta :-

    >SPBC543.09 CCCACAACACACAAGTCCAAGGCATCTATATTATCCTTCCTTTAGGCTATTTTTTGTTGA CAGGATTAGTAACGGGTTTATTGAGCTGAAAAAAAAGTGACAACTGTGTTCTTATTCCTT TTAATTACCATTTTTGCTGACGTGAAACATTGGAATTTCTTCAATTTCATAACGCTTTTT GGAGGTTGCCCAAATCCATGTCCGGAGGTAATAATAAATTTTTATTTTAATACAACCTTA TAACTTTTCGTCTCTATTCGTTTTGGTCTCAATTACTGAATTGAACGATTAATTACTGCT TTCTTGAATTTTTTAATTCTAGAATCCACCTTTACTCGTCATATACGAAGGATATTTTTC TTAAAACAATCATTTACGTTTATCTCTTTCGATATTGAGGGTTTTATATATTATACTTGC CCTTACACGCTCAATTCAAGTTATTGTACCCTGCGACTTATTTCCATATAATATTCCTTA TGCGAAATCCCTTTTTGACGTTTAGGGCACCTACTAGGAAAACAGGAGATTACCTGGTTT CTAAATTCGTAAAGAAGGATAATTTTTCTTCTTTGCGTTTGGCAAGGGCTTATACTTTTT CTACACGTTCCACAGCTGTTTCACAATTTTCTCTTCTCTCACTTTCTCAGAGATCTTTTC AGTCCCTTAAAATAAATAAAGGAATACCGGAAAAACATAAAATCCCTCTCATTTCATCTA AACAATTTAGCGTAACCTCAAAAAGATCGCAAAATGGGTCTTCAGGATCCAATTCTGATG CTAATGGTAGGAAAAATGGCCAGAAAAATGATGATTCAAAAAAGAAGGGATTGAATGGCA ATGATCCGAAAAAAGTTTTTGAAATAGCCTTAAATGGCAACACTATTTTAGGTGGAATTT TAGTTGCCTATATCCTTTACAATGTTCTCTCGCCTAATGCAAATATGCAAGAAATTACTT GGCAAGATTTTCGACAACAGTTTTTAGACAAGGGTTTAGTTGAACGGCTAGTTGTTGTTA ACCGCAATATGGTTAGAGTTATTTTGAGAGGCGGTGTAGCTTCAGGTTCAGGGCAGTACT ATTTTTCAATTGGTTCCATCGACTCTTTCGATCGAAAACTAGAGGATGCACAACGTCAAC TGGGTATTCCACCTTCTGAATTTGTCCCTGTCGCTTATCATGACGAAGTCTCTGTTCTTG CTACTTTATTGTCTTTTGCTCCCACCTTACTGATCATTGGAAGTGTCATTTATTTATCGC GACGGGCTTCGGGTGCCGCAGGAGGTGGTCAAGGTGGCATTTTTGGAATTGGTAAGAGCC GAGCGAAGATGTTTAATCATGAAACTGATATCAAAATAAAATTTGCTGATGTCGCTGGCG TTGACGAGGCTAAAGAAGAGATTATGGAATTCGTCAAATTTTTAAAAAATCCCAAGTTTT ATGAAAGGTTGGGGGCTAAAATTCCTCGTGGTGCCATTCTTTCTGGTCCTCCTGGTACCG GTAAAACTCTTCTTGCTAAAGCCACCGCTGGTGAAGCTAACGTCCCTTTTTTAAGTGTGT CAGGTTCTGAGTTTCTTGAAATGTTTGTTGGTGTTGGACCTTCCCGCGTAAGAGATCTTT TTGCTACTGCTCGCAAGAACGCTCCTTGTATTATTTTCATAGATGAAATTGATGCAATTG GTAAAGCAAGAGGACGTGGAGGACAATTTGGTTCCAATGATGAACGCGAAAGCACTCTTA ATCAGCTATTAGTTGAAATGGACGGTTTTACGTCTAGCGAACATATCGTCGTATTCGCTG GTACTAATCGACCAGACGTATTGGACCCGGCACTTCTACGTCCTGGTCGATTCGATCGTC AAATTACGATTGATCGTCCTGATATTGGCGGTCGTGAACAAATATTTAAGGTCCACCTTA AGCATATTAAGGCAGCCGATAACATCGACTTAATTGCCAAGCGTCTTGCCGTCCTAACTT CTGGTTTTACAGGAGCTGATATAATGAATGTATGTAATGAAGGAGCGTTAATTGCAGCAC GATCAAATAGTAATGAAGTCCAAATGGTACATTTTGAGCAAGCTATTGAAAGAGTCACGG CAGGTTTGGAAAAGAAGAGTAGGGTACTAAGTCCTGAAGAAAAAAACACCGTTGCTCATC ATGAAGCTGGACATGCGGTAGCTGGTTGGTTTATGGAGTACGTCGATCCACTATTGAAGG TCTCAATCATTCCTAGAGCTCAAGCCCTTGGCTATGCTAGTTATTTACCCAAAGATCAGT ATCTGATGAGTCGAGGGCAGATTTTAGATCAAATGGGAATGGCTTTGGCTGGGCGTGTTT CTGAAGAAATATTTTTTGGACCAGAAAAGATTACTTCGGGAGCTTCCGATGATTTTCAAA AAGTAACGCGCATGGCTCAAGCGTATGTGACCCAATATGGTATGTCTCCGACTGTTGGTA CTATAGCTTATCCCATCGACACTCGGGAAACTGTTCAAAAACCATTTTCTGAGGCTACAG CTCAAATGATTGATGAAGAAATTCGAAAGCTTGTAAAGCATGCATACGAAAGAACTAAGA AACTTTTGCTAGAACATAAGCAAGGCTTAGAAAATATTGCTCAACGTCTATTACAGAAAG AAGTCATCACTTATAACGAAGTTGAGACGATTCTTGGACCAAGGCCATATGCATACAAAC ATTTAAATATTTCTGAACTTATGCGTCAGTCTGAGTATAAAAATGATCACGATCCTCGAA ATCCACCAATCCCCCCATCTCCTCAACAACCTTCTGCCTAATTTGTCAATTTACTGAATT TAAATAAAGCGTTATGAATGAAAATAGTTACTTTCATGGATCTCATGATCAAAGTATTTG TCAATTGAATATCATATAGCTATTTTATCTATTTTTTCTATTTAATATTACAGAAGCTAG ATAAATATACTTAACATCAATTCTTCTGAACTTTAAAAGGTTAATAGATTATTATTTTCT AACACAAAATAGCTAATATCGTAACAAACAAACTTGTGTTTAGTTTCGACCTTTAGACCA G
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  • Fasta :-

    MRNPFLTFRAPTRKTGDYLVSKFVKKDNFSSLRLARAYTFSTRSTAVSQFSLLSLSQRSF QSLKINKGIPEKHKIPLISSKQFSVTSKRSQNGSSGSNSDANGRKNGQKNDDSKKKGLNG NDPKKVFEIALNGNTILGGILVAYILYNVLSPNANMQEITWQDFRQQFLDKGLVERLVVV NRNMVRVILRGGVASGSGQYYFSIGSIDSFDRKLEDAQRQLGIPPSEFVPVAYHDEVSVL ATLLSFAPTLLIIGSVIYLSRRASGAAGGGQGGIFGIGKSRAKMFNHETDIKIKFADVAG VDEAKEEIMEFVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSV SGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTL NQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHL KHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQAIERVT AGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVDPLLKVSIIPRAQALGYASYLPKDQ YLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYVTQYGMSPTVG TIAYPIDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLENIAQRLLQK EVITYNEVETILGPRPYAYKHLNISELMRQSEYKNDHDPRNPPIPPSPQQPSA

  • title: ATP binding site
  • coordinates: P337,P338,G339,T340,G341,K342,T343,L344,D395,N443
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
SPBC543.09S7720.6410.149SPBC543.09S7670.5160.414
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
SPBC543.09S7720.6410.149SPBC543.09S7670.5160.414
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC543.09264 SSRRASGAAG0.99unspSPBC543.09551 SSRVLSPEEK0.998unsp

SPBC543.09      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India