SPCC11E10.02c | pig-K

_IDPredictionOTHERSPmTPCS_Position
SPCC11E10.02cSP0.0069000.9929890.000111CS pos: 19-20. IAA-ES. Pr: 0.7231
No Results

  • Fasta :-

    >SPCC11E10.02c MIVQFVALLLLNLLQIIAAESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPD SQIILMIADDYACNSRNLFPGTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERV PENTPASKRLLTNERSNILIYMTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEI LFMVDTCQANSLYTKIYSPNVLAIGSSEVGTSSYSHHADIDIGVAVIDRFTFSNLEFLEN RVDSKSKLTMQDLINSYNPYEIHSTPGVQPINLRRSPDDILITDFFGNVRDIELHSEKIN WMLPGENTTKPSIKRNSFVFQAQNDMQDDGKGFGISNLKSFLPPTRELKYKKHPISRIIS AVVCISFSIGFPYYASKYLK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/73 Sequence name : 73 Sequence length : 380 VALUES OF COMPUTED PARAMETERS Coef20 : 4.550 CoefTot : 0.032 ChDiff : -9 ZoneTo : 59 KR : 5 DE : 1 CleavSite : 43 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.753 2.394 0.402 0.764 MesoH : -0.408 0.507 -0.346 0.237 MuHd_075 : 43.553 19.195 10.276 9.342 MuHd_095 : 22.454 24.083 7.678 6.615 MuHd_100 : 33.818 22.853 7.536 8.389 MuHd_105 : 44.886 24.779 10.381 10.740 Hmax_075 : 13.600 13.500 3.167 5.430 Hmax_095 : 6.900 27.300 4.884 8.312 Hmax_100 : 8.400 29.100 5.503 5.040 Hmax_105 : 12.600 14.933 2.727 5.390 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2501 0.7499 DFMC : 0.4110 0.5890 This protein is probably imported in mitochondria. f(Ser) = 0.0847 f(Arg) = 0.0678 CMi = 0.51387 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 380 SPCC11E10.02c MIVQFVALLLLNLLQIIAAESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLFP 80 GTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERVPENTPASKRLLTNERSNILIYMTGHGGDGFIKFQDAEELS 160 SEDLADAIEQIHQHKRYNEILFMVDTCQANSLYTKIYSPNVLAIGSSEVGTSSYSHHADIDIGVAVIDRFTFSNLEFLEN 240 RVDSKSKLTMQDLINSYNPYEIHSTPGVQPINLRRSPDDILITDFFGNVRDIELHSEKINWMLPGENTTKPSIKRNSFVF 320 QAQNDMQDDGKGFGISNLKSFLPPTRELKYKKHPISRIISAVVCISFSIGFPYYASKYLK 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPCC11E10.02c 35 VLISTSR|FW 0.104 . SPCC11E10.02c 41 RFWFNYR|HT 0.102 . SPCC11E10.02c 51 NVLGIYR|SV 0.115 . SPCC11E10.02c 54 GIYRSVK|RL 0.142 . SPCC11E10.02c 55 IYRSVKR|LG 0.115 . SPCC11E10.02c 76 DYACNSR|NL 0.090 . SPCC11E10.02c 89 VFDNADR|AL 0.079 . SPCC11E10.02c 103 EIEIDYK|GY 0.063 . SPCC11E10.02c 114 TVEAFIR|LL 0.089 . SPCC11E10.02c 119 IRLLTER|VP 0.084 . SPCC11E10.02c 128 ENTPASK|RL 0.060 . SPCC11E10.02c 129 NTPASKR|LL 0.155 . SPCC11E10.02c 135 RLLTNER|SN 0.109 . SPCC11E10.02c 152 GGDGFIK|FQ 0.076 . SPCC11E10.02c 175 EQIHQHK|RY 0.076 . SPCC11E10.02c 176 QIHQHKR|YN 0.291 . SPCC11E10.02c 195 ANSLYTK|IY 0.075 . SPCC11E10.02c 229 GVAVIDR|FT 0.103 . SPCC11E10.02c 241 LEFLENR|VD 0.085 . SPCC11E10.02c 245 ENRVDSK|SK 0.084 . SPCC11E10.02c 247 RVDSKSK|LT 0.070 . SPCC11E10.02c 274 VQPINLR|RS 0.067 . SPCC11E10.02c 275 QPINLRR|SP 0.305 . SPCC11E10.02c 290 DFFGNVR|DI 0.081 . SPCC11E10.02c 298 IELHSEK|IN 0.059 . SPCC11E10.02c 310 PGENTTK|PS 0.059 . SPCC11E10.02c 314 TTKPSIK|RN 0.079 . SPCC11E10.02c 315 TKPSIKR|NS 0.173 . SPCC11E10.02c 331 DMQDDGK|GF 0.074 . SPCC11E10.02c 339 FGISNLK|SF 0.061 . SPCC11E10.02c 346 SFLPPTR|EL 0.080 . SPCC11E10.02c 349 PPTRELK|YK 0.103 . SPCC11E10.02c 351 TRELKYK|KH 0.077 . SPCC11E10.02c 352 RELKYKK|HP 0.085 . SPCC11E10.02c 357 KKHPISR|II 0.147 . SPCC11E10.02c 377 FPYYASK|YL 0.071 . SPCC11E10.02c 380 YASKYLK|-- 0.074 . ____________________________^_________________

  • Fasta :-

    >SPCC11E10.02c AAAAGGGCTTGATAATTTTTTTTTGAATTATTTGCAGGAATCGTTTACTGAATTAACGTG TAAAAACTTTACATGCTAATATCGTGCTCAAACATTACGCTTTGTCACAAAGTTGTATAA ACGTGATACTACTAAACGGCTTTATGTTTATTTAATTTCAACAACTGAAGAGTAGCATTC TTAATGATTGTTCAGTTTGTGGCACTTTTGCTGCTCAATTTGCTGCAAATAATAGCTGCA GAAAGTTCGCATACAAATAATTGGGCCGTCTTAATTTCTACCTCGCGTTTTTGGTTCAAC TACAGACATACTGCGAATGTTTTAGGAATATACAGATCAGTCAAGCGTCTTGGAATCCCA GACAGTCAAATTATATTGATGATAGCTGACGACTACGCTTGCAACTCTCGAAATTTGTTT CCAGGAACAGTTTTTGATAATGCAGATAGAGCATTAGATTTGTATGGAGAAGAAATTGAA ATTGATTATAAGGGCTATGAAGTTACTGTTGAAGCGTTTATCAGATTGTTGACAGAGAGA GTCCCTGAAAATACACCAGCCAGCAAACGATTATTGACAAACGAAAGATCTAATATCCTA ATTTATATGACAGGTCATGGAGGCGATGGTTTTATTAAATTTCAAGATGCTGAAGAATTG AGTTCTGAGGACCTTGCTGATGCAATTGAGCAAATACATCAACACAAGAGATACAATGAA ATCCTATTTATGGTAGATACATGCCAGGCAAATTCTTTGTATACAAAAATCTATTCGCCA AACGTCTTGGCAATTGGTAGCAGTGAAGTGGGAACTTCTTCTTATTCCCATCATGCTGAT ATCGATATTGGAGTTGCAGTGATCGATCGCTTCACCTTTTCTAATTTGGAATTCTTAGAA AATAGGGTTGATAGTAAAAGCAAATTGACTATGCAGGATTTGATCAACTCCTATAATCCG TATGAAATTCATTCTACACCTGGTGTCCAACCCATCAACTTACGAAGAAGCCCGGATGAC ATTTTAATAACGGACTTCTTTGGAAACGTTCGTGACATTGAATTGCACAGTGAAAAAATA AATTGGATGTTGCCCGGTGAAAACACTACCAAACCATCAATAAAAAGAAATAGTTTCGTA TTTCAGGCACAAAATGACATGCAGGATGACGGTAAAGGTTTTGGTATTTCAAATCTAAAG AGTTTTCTTCCACCAACCAGAGAACTTAAATACAAAAAACATCCTATTTCTCGAATTATC TCCGCTGTTGTGTGTATTTCCTTCTCTATTGGTTTTCCGTACTATGCCAGTAAGTACCTG AAATAGGCGTTTCAAACAGGGTTTCTCACGTTTTTTATGACATTCATTAACACATTAATT TATCTTCTATTTCAAAGTACATTTCAAACGTTTGGATTGGTTTCTTTGTAGACTTGGATC ATCCCTAGTAATTCGAGGACTAATGTTACTCAAAATGCTTTTGCTTCATCTTAGGAAGCG TAGGCTAATGCCAATTACTAATTATAATTTATATACGGTCAATATCTCAATAATATTTTC CATTAAAATTTACACATATGTAAGTAGGGATGAAGCGATGT
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  • Fasta :-

    MIVQFVALLLLNLLQIIAAESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPD SQIILMIADDYACNSRNLFPGTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERV PENTPASKRLLTNERSNILIYMTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEI LFMVDTCQANSLYTKIYSPNVLAIGSSEVGTSSYSHHADIDIGVAVIDRFTFSNLEFLEN RVDSKSKLTMQDLINSYNPYEIHSTPGVQPINLRRSPDDILITDFFGNVRDIELHSEKIN WMLPGENTTKPSIKRNSFVFQAQNDMQDDGKGFGISNLKSFLPPTRELKYKKHPISRIIS AVVCISFSIGFPYYASKYLK

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPCC11E10.02c276 SNLRRSPDDI0.998unspSPCC11E10.02c276 SNLRRSPDDI0.998unspSPCC11E10.02c276 SNLRRSPDDI0.998unspSPCC11E10.02c160 SAEELSSEDL0.995unspSPCC11E10.02c244 SNRVDSKSKL0.99unsp

SPCC11E10.02c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India