SPCC1259.02c | Endoplasmic Reticulum metallopeptidase Erm1 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPCC1259.02cOTHER0.5983240.3981360.003540
No Results

  • Fasta :-

    >SPCC1259.02c MVLVCASSSKCKRNTFLQLAMVLFAVVMARIALYFHNHLDEPLVDPYDANGNPQFSEANA LKHVIHLSDDIGYRILGTIEQERAREYIMNEVLALQKQLQDGPNADIHQMEVSLESGDGA HRFDFMNKYVIKKYQNLKNIVVRLSNGTEACKEEAVLINAHVDSTLPSPGATDDALAVAI LLEAIRIFISRPVPLTHSIVFLFNDAEESLQDASHMFITQSPLRDTIKCVVNLEACGTTG SEILFQATSNEMIKAYSHVPHPFGTVLADDVFRTGLILSDTDFRQFVQYGNLTGLDMAVV KNSYLYHTKKDLAPYISPGTPQNFGENILAILTYLVSPEADLNNMKSSGTVYFSVFNSLF FMYSKLTSKILNTLVGGLGILLTLRGSEGSFTVALIAQVISIAGIFVIPNIWAYILGNVL DCGMSWFRNEYWPLFIYLPAIFASLFFTESLFKRSEHLALRATIFIFSLLTFIPLPSAYL FTIIDFFMVFALFLNDKILAKPGTVHPLTYFIGSIGAMTVGFESAINLLEIFVPLTGRIG TDKVADNVVATVCVCGFNIYFPLMSPWIQRFRSRCCFRLGLLFSIFVVGFSSFILAKQDT YYDSLHPRRIFVQRMENITSNEVSLHIASADSAPGFDKLSSDLSSLLTDEPVVKTEMDDW NSDWDTVYPFSQFLGSYRIPLNDTVDVTTLPSIKFSNKVVKDNVVNVTVTVEHPGLIWTV VSFDADVLSWSLPEVPSTVRRHHVREVSAYGLDSYSFNMSYLEAPIYFDFVGVDGVGHYP SKASEGRDRASIQLCEKLTNDYLPDWTDTLCIGVVSGNFKLE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/169 Sequence name : 169 Sequence length : 822 VALUES OF COMPUTED PARAMETERS Coef20 : 4.828 CoefTot : 0.759 ChDiff : -25 ZoneTo : 39 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.424 2.453 0.444 0.860 MesoH : 1.026 1.332 0.023 0.567 MuHd_075 : 22.638 15.155 6.557 5.137 MuHd_095 : 25.552 16.677 6.480 5.966 MuHd_100 : 24.187 13.353 5.214 4.516 MuHd_105 : 23.131 11.595 4.702 4.522 Hmax_075 : 14.100 10.762 3.858 3.140 Hmax_095 : 21.700 22.400 2.903 7.315 Hmax_100 : 21.500 23.700 1.758 6.780 Hmax_105 : 22.050 18.100 2.758 5.900 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2436 0.7564 DFMC : 0.1745 0.8255 This protein is probably imported in mitochondria. f(Ser) = 0.0769 f(Arg) = 0.0513 CMi = 0.54250 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 822 SPCC1259.02c MVLVCASSSKCKRNTFLQLAMVLFAVVMARIALYFHNHLDEPLVDPYDANGNPQFSEANALKHVIHLSDDIGYRILGTIE 80 QERAREYIMNEVLALQKQLQDGPNADIHQMEVSLESGDGAHRFDFMNKYVIKKYQNLKNIVVRLSNGTEACKEEAVLINA 160 HVDSTLPSPGATDDALAVAILLEAIRIFISRPVPLTHSIVFLFNDAEESLQDASHMFITQSPLRDTIKCVVNLEACGTTG 240 SEILFQATSNEMIKAYSHVPHPFGTVLADDVFRTGLILSDTDFRQFVQYGNLTGLDMAVVKNSYLYHTKKDLAPYISPGT 320 PQNFGENILAILTYLVSPEADLNNMKSSGTVYFSVFNSLFFMYSKLTSKILNTLVGGLGILLTLRGSEGSFTVALIAQVI 400 SIAGIFVIPNIWAYILGNVLDCGMSWFRNEYWPLFIYLPAIFASLFFTESLFKRSEHLALRATIFIFSLLTFIPLPSAYL 480 FTIIDFFMVFALFLNDKILAKPGTVHPLTYFIGSIGAMTVGFESAINLLEIFVPLTGRIGTDKVADNVVATVCVCGFNIY 560 FPLMSPWIQRFRSRCCFRLGLLFSIFVVGFSSFILAKQDTYYDSLHPRRIFVQRMENITSNEVSLHIASADSAPGFDKLS 640 SDLSSLLTDEPVVKTEMDDWNSDWDTVYPFSQFLGSYRIPLNDTVDVTTLPSIKFSNKVVKDNVVNVTVTVEHPGLIWTV 720 VSFDADVLSWSLPEVPSTVRRHHVREVSAYGLDSYSFNMSYLEAPIYFDFVGVDGVGHYPSKASEGRDRASIQLCEKLTN 800 DYLPDWTDTLCIGVVSGNFKLE 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ...................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPCC1259.02c 10 VCASSSK|CK 0.064 . SPCC1259.02c 12 ASSSKCK|RN 0.070 . SPCC1259.02c 13 SSSKCKR|NT 0.356 . SPCC1259.02c 30 FAVVMAR|IA 0.097 . SPCC1259.02c 62 SEANALK|HV 0.080 . SPCC1259.02c 74 SDDIGYR|IL 0.118 . SPCC1259.02c 83 GTIEQER|AR 0.093 . SPCC1259.02c 85 IEQERAR|EY 0.101 . SPCC1259.02c 97 EVLALQK|QL 0.061 . SPCC1259.02c 122 SGDGAHR|FD 0.074 . SPCC1259.02c 128 RFDFMNK|YV 0.090 . SPCC1259.02c 132 MNKYVIK|KY 0.067 . SPCC1259.02c 133 NKYVIKK|YQ 0.093 . SPCC1259.02c 138 KKYQNLK|NI 0.062 . SPCC1259.02c 143 LKNIVVR|LS 0.112 . SPCC1259.02c 152 NGTEACK|EE 0.055 . SPCC1259.02c 186 ILLEAIR|IF 0.065 . SPCC1259.02c 191 IRIFISR|PV 0.110 . SPCC1259.02c 224 ITQSPLR|DT 0.110 . SPCC1259.02c 228 PLRDTIK|CV 0.080 . SPCC1259.02c 254 TSNEMIK|AY 0.092 . SPCC1259.02c 273 LADDVFR|TG 0.069 . SPCC1259.02c 284 LSDTDFR|QF 0.083 . SPCC1259.02c 301 LDMAVVK|NS 0.059 . SPCC1259.02c 309 SYLYHTK|KD 0.056 . SPCC1259.02c 310 YLYHTKK|DL 0.140 . SPCC1259.02c 346 ADLNNMK|SS 0.097 . SPCC1259.02c 365 LFFMYSK|LT 0.080 . SPCC1259.02c 369 YSKLTSK|IL 0.063 . SPCC1259.02c 385 GILLTLR|GS 0.087 . SPCC1259.02c 428 CGMSWFR|NE 0.072 . SPCC1259.02c 453 FTESLFK|RS 0.053 . SPCC1259.02c 454 TESLFKR|SE 0.415 . SPCC1259.02c 461 SEHLALR|AT 0.090 . SPCC1259.02c 497 ALFLNDK|IL 0.062 . SPCC1259.02c 501 NDKILAK|PG 0.064 . SPCC1259.02c 538 FVPLTGR|IG 0.072 . SPCC1259.02c 543 GRIGTDK|VA 0.085 . SPCC1259.02c 570 MSPWIQR|FR 0.100 . SPCC1259.02c 572 PWIQRFR|SR 0.104 . SPCC1259.02c 574 IQRFRSR|CC 0.101 . SPCC1259.02c 578 RSRCCFR|LG 0.070 . SPCC1259.02c 597 SSFILAK|QD 0.065 . SPCC1259.02c 608 YDSLHPR|RI 0.134 . SPCC1259.02c 609 DSLHPRR|IF 0.112 . SPCC1259.02c 614 RRIFVQR|ME 0.104 . SPCC1259.02c 638 SAPGFDK|LS 0.062 . SPCC1259.02c 654 TDEPVVK|TE 0.061 . SPCC1259.02c 678 QFLGSYR|IP 0.068 . SPCC1259.02c 694 TTLPSIK|FS 0.068 . SPCC1259.02c 698 SIKFSNK|VV 0.080 . SPCC1259.02c 701 FSNKVVK|DN 0.085 . SPCC1259.02c 740 EVPSTVR|RH 0.069 . SPCC1259.02c 741 VPSTVRR|HH 0.190 . SPCC1259.02c 745 VRRHHVR|EV 0.284 . SPCC1259.02c 782 VGHYPSK|AS 0.068 . SPCC1259.02c 787 SKASEGR|DR 0.120 . SPCC1259.02c 789 ASEGRDR|AS 0.090 . SPCC1259.02c 797 SIQLCEK|LT 0.068 . SPCC1259.02c 820 VVSGNFK|LE 0.064 . ____________________________^_________________

  • Fasta :-

    >SPCC1259.02c TTATCCAATTAGTACAGCTCGACCCACTGTGGAACGACTTCATAATCCGTATAGGACCGG AACTACGCCAAAACTTAAGATCCGTCTATTTACCATTAACCTCTTGTTTGACTCTCTTCT TCTCTTAACCAAATTCATTGTTTTACATTGAATCTTTGCCATAGGGACAGGAACGAAGAA TAATTTGCTTTCTATTTCCTCCAGTAGATTTCTTAAAAAAAAAACGCCTTTGTAGTTTTG AAGAGAAAAGAGCTTGATTTTTCTTTTCTTTTCTTTATTTTGTTATTTACACAATTTCGG ATTTTGATTCAAAACGGACATAAGCATTTCTTTCTTATTCCCTTTGTTTGTATATTTTTT TTGTTGGTTGACTTAGAATCATAAACCTCATCCTTTGACGTGTGCTGTTTATCATCAGGT ATTGCGAAAATTACAAAATTCATTCATTCTGCTTTGAGTTGTGAGACGGAGGGTCGCATG ATTGTGCCTTTTTTGCATATTTAGATTTCTTGCTGCTCCCTTTGCCTACTTACTTTATCG GGGTTCTTCCTTCGAGAGAGGTATATATTAGTATTTAAATCTTTTGGATTATCATTTATT TTTATTATATAATTTTTTATTATTATTGGTGTGTTATCTTGTCAATTCTCCCCCTCTATT CTTGTAAAATATTTACTTTGCGCCTTCTTTCAACATGGTGTTAGTTTGTGCTTCATCCTC TAAATGTAAGCGTAATACATTCCTACAACTGGCAATGGTACTATTTGCCGTTGTGATGGC AAGGATTGCGCTCTACTTTCACAATCATCTTGATGAACCACTTGTTGATCCCTATGATGC TAATGGTAACCCCCAATTTTCCGAGGCAAATGCCCTCAAACATGTTATTCATCTGTCCGA CGACATTGGCTATCGAATTCTCGGGACTATTGAGCAGGAACGTGCTCGTGAATACATAAT GAATGAGGTGTTAGCTTTGCAAAAGCAATTGCAGGACGGCCCGAACGCCGATATCCATCA AATGGAGGTTTCCCTCGAATCCGGTGACGGAGCTCATCGCTTTGACTTTATGAATAAGTA TGTTATCAAAAAATATCAAAACCTTAAAAACATTGTTGTTCGTTTGAGCAATGGAACTGA GGCTTGTAAGGAAGAAGCCGTTCTCATCAATGCTCACGTTGATTCAACTCTGCCTAGTCC TGGTGCCACTGATGATGCTCTTGCTGTTGCAATCCTTCTCGAAGCCATTCGTATTTTTAT TTCTCGACCTGTTCCATTAACTCATTCAATTGTCTTTTTGTTCAATGATGCTGAAGAGTC GTTGCAAGATGCGTCCCACATGTTTATTACTCAAAGTCCACTCAGAGACACAATTAAGTG TGTAGTCAACTTAGAGGCTTGTGGTACCACCGGTTCCGAAATTCTTTTCCAGGCTACTAG CAACGAGATGATTAAGGCATATTCTCATGTTCCCCATCCATTTGGAACGGTATTGGCCGA TGATGTTTTCCGTACAGGTTTGATCTTGAGTGATACCGATTTCCGTCAGTTCGTTCAATA CGGAAACCTTACAGGCTTGGATATGGCCGTAGTTAAAAACAGTTACTTGTACCATACAAA GAAAGATTTGGCTCCTTATATATCGCCTGGTACTCCTCAAAATTTCGGTGAAAATATCCT TGCCATTCTTACCTATCTCGTGTCCCCCGAAGCAGACTTGAACAACATGAAGTCATCTGG TACCGTGTATTTTTCAGTTTTTAACAGTCTTTTCTTCATGTACTCCAAGCTCACGTCTAA GATTTTGAATACTTTAGTTGGAGGGTTGGGTATTCTACTTACTCTACGTGGTTCTGAGGG ATCTTTTACTGTTGCTTTGATCGCTCAAGTTATTTCCATTGCAGGAATATTTGTAATTCC CAACATTTGGGCATACATTCTTGGAAATGTACTGGATTGTGGTATGAGCTGGTTCCGAAA CGAGTATTGGCCTTTATTTATTTATCTTCCTGCAATTTTTGCATCTTTATTCTTTACCGA ATCTTTGTTTAAGCGTTCTGAACATCTTGCATTAAGAGCAACGATCTTTATCTTTTCTTT ACTCACCTTTATCCCATTGCCTTCTGCATATTTATTTACAATTATAGATTTTTTTATGGT CTTTGCTTTGTTTCTTAACGACAAAATCCTCGCTAAACCCGGCACAGTCCACCCATTGAC GTATTTCATCGGTTCAATTGGCGCGATGACTGTTGGATTTGAATCTGCTATAAATCTCCT TGAAATTTTTGTGCCCCTTACTGGTCGTATTGGAACTGACAAGGTTGCCGATAATGTAGT TGCCACTGTCTGTGTTTGTGGATTTAACATTTACTTCCCTTTAATGTCCCCTTGGATCCA GAGGTTCCGTTCTCGCTGCTGCTTCCGACTTGGCCTTCTTTTCTCCATTTTTGTCGTTGG CTTTAGTTCATTCATCTTAGCTAAGCAAGATACCTATTATGACTCATTGCATCCTAGACG TATTTTCGTCCAGCGTATGGAAAATATCACCTCTAACGAAGTTTCATTGCACATTGCTTC TGCTGATTCTGCTCCTGGTTTTGACAAGCTCTCATCTGATCTATCTAGTCTTCTTACTGA CGAACCAGTTGTTAAAACTGAAATGGATGACTGGAATTCCGATTGGGATACTGTATACCC TTTCAGTCAATTTCTAGGATCTTATCGTATTCCGTTGAATGATACTGTCGATGTGACCAC TTTACCATCTATTAAGTTTTCCAATAAAGTTGTTAAGGATAATGTTGTTAATGTTACTGT TACAGTCGAACATCCTGGACTTATTTGGACAGTCGTTTCATTTGATGCTGACGTTCTTTC CTGGTCTTTGCCTGAGGTTCCATCTACTGTTCGTAGACATCATGTTCGCGAAGTGAGTGC TTATGGACTGGATTCTTATTCTTTCAATATGAGTTATCTTGAAGCCCCAATTTACTTTGA TTTCGTAGGCGTTGACGGAGTAGGACACTATCCTTCAAAGGCTTCAGAAGGTCGTGATCG TGCTAGTATTCAACTGTGCGAGAAGTTGACCAATGATTATCTTCCAGACTGGACCGATAC CCTTTGTATTGGTGTAGTTTCAGGAAATTTCAAGCTCGAGTAAAGCGATTTCTGAAGATT CCATTCTTTTACCTTGCTCACCTATTCACTACATCAAAAAATACCAATTTCTCTCATAAT AGGTTTCGTTTACAACTAATATTGTTCCCCTTTAACTATGGTTATGTAATCTGTAAAAAG AAGCAGCGACTGATAACTGAGTGTTTAGGTTACGAAGAATATGGAATTCAATAAAAATAT TATATTACATTCAATTACTTTATCACATTTGATGTAGTACAAAGCAACTTTATCGCTTTT CAAGCGATCTCTTTTTCCACGATATGACTAGTTAGTTGATCTTTATGTAGAGAGGGCTTA GCGGACGAGGGTAATAAGTTAAGCGATTCC
  • Download Fasta

  • Fasta :-

    MVLVCASSSKCKRNTFLQLAMVLFAVVMARIALYFHNHLDEPLVDPYDANGNPQFSEANA LKHVIHLSDDIGYRILGTIEQERAREYIMNEVLALQKQLQDGPNADIHQMEVSLESGDGA HRFDFMNKYVIKKYQNLKNIVVRLSNGTEACKEEAVLINAHVDSTLPSPGATDDALAVAI LLEAIRIFISRPVPLTHSIVFLFNDAEESLQDASHMFITQSPLRDTIKCVVNLEACGTTG SEILFQATSNEMIKAYSHVPHPFGTVLADDVFRTGLILSDTDFRQFVQYGNLTGLDMAVV KNSYLYHTKKDLAPYISPGTPQNFGENILAILTYLVSPEADLNNMKSSGTVYFSVFNSLF FMYSKLTSKILNTLVGGLGILLTLRGSEGSFTVALIAQVISIAGIFVIPNIWAYILGNVL DCGMSWFRNEYWPLFIYLPAIFASLFFTESLFKRSEHLALRATIFIFSLLTFIPLPSAYL FTIIDFFMVFALFLNDKILAKPGTVHPLTYFIGSIGAMTVGFESAINLLEIFVPLTGRIG TDKVADNVVATVCVCGFNIYFPLMSPWIQRFRSRCCFRLGLLFSIFVVGFSSFILAKQDT YYDSLHPRRIFVQRMENITSNEVSLHIASADSAPGFDKLSSDLSSLLTDEPVVKTEMDDW NSDWDTVYPFSQFLGSYRIPLNDTVDVTTLPSIKFSNKVVKDNVVNVTVTVEHPGLIWTV VSFDADVLSWSLPEVPSTVRRHHVREVSAYGLDSYSFNMSYLEAPIYFDFVGVDGVGHYP SKASEGRDRASIQLCEKLTNDYLPDWTDTLCIGVVSGNFKLE

  • title: metal binding site
  • coordinates: H161,D173,E207,E208,E234,H307
No Results
No Results
IDSitePeptideScoreMethod
SPCC1259.02c168 SSTLPSPGAT0.992unsp

SPCC1259.02c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India