SPCC1259.10 | mitochondrial metallopeptidase, tRNA N6-threonyl-carbamoyl-adenosine (t6A), a modification protein Pgp1

_IDPredictionOTHERSPmTPCS_Position
SPCC1259.10OTHER0.5720120.0007990.427188
No Results

  • Fasta :-

    >SPCC1259.10 MLCLVYNSILCKQRRISLKVLQQFRCWNISKTFLSYRTLTALAIETSCDDTSVSVVRTSD SSSHCQNEIICLNTHRTISKYEAYGGIHPTIVIHEHQKNLAKVIQRTISDAARSGITDFD LIAVTRGPGMIGPLAVGLNTAKGLAVGLQKPLLAVHHMQAHALAVQLEKSIDFPYLNILV SGGHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKCAKYLGIPWDNEMPAAALEQFASPEIN STSYSLKPPIPLNTREKVHSASFSFSGLESYACRIIRKTPLNLSEKKFFAYQLQYAAFQH ICQKTLLALKRLDLSKVKYLVCSGGVARNELLKKMLNDTLMVLQFEHQPTDIKLVYPSPD ICSDNAAMIGYTAIQMFKAGYTSSFDVEPIRKWPINQILTVEGWLTKKNKKV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/246 Sequence name : 246 Sequence length : 412 VALUES OF COMPUTED PARAMETERS Coef20 : 4.787 CoefTot : 0.860 ChDiff : 11 ZoneTo : 44 KR : 7 DE : 0 CleavSite : 47 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.141 1.218 0.130 0.525 MesoH : 0.162 0.658 -0.261 0.352 MuHd_075 : 29.903 22.550 10.092 6.067 MuHd_095 : 35.431 22.306 8.701 8.683 MuHd_100 : 33.166 20.090 7.721 8.477 MuHd_105 : 36.981 18.651 9.048 8.585 Hmax_075 : 7.350 13.500 -0.523 6.770 Hmax_095 : 11.800 15.500 1.780 5.170 Hmax_100 : 11.800 15.500 1.780 5.170 Hmax_105 : 5.688 11.667 1.234 3.264 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0019 0.9981 DFMC : 0.0029 0.9971 This protein is probably imported in mitochondria. f(Ser) = 0.0909 f(Arg) = 0.0909 CMi = 0.46083 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 412 SPCC1259.10 MLCLVYNSILCKQRRISLKVLQQFRCWNISKTFLSYRTLTALAIETSCDDTSVSVVRTSDSSSHCQNEIICLNTHRTISK 80 YEAYGGIHPTIVIHEHQKNLAKVIQRTISDAARSGITDFDLIAVTRGPGMIGPLAVGLNTAKGLAVGLQKPLLAVHHMQA 160 HALAVQLEKSIDFPYLNILVSGGHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKCAKYLGIPWDNEMPAAALEQFASPEIN 240 STSYSLKPPIPLNTREKVHSASFSFSGLESYACRIIRKTPLNLSEKKFFAYQLQYAAFQHICQKTLLALKRLDLSKVKYL 320 VCSGGVARNELLKKMLNDTLMVLQFEHQPTDIKLVYPSPDICSDNAAMIGYTAIQMFKAGYTSSFDVEPIRKWPINQILT 400 VEGWLTKKNKKV 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPCC1259.10 12 YNSILCK|QR 0.072 . SPCC1259.10 14 SILCKQR|RI 0.096 . SPCC1259.10 15 ILCKQRR|IS 0.205 . SPCC1259.10 19 QRRISLK|VL 0.079 . SPCC1259.10 25 KVLQQFR|CW 0.084 . SPCC1259.10 31 RCWNISK|TF 0.059 . SPCC1259.10 37 KTFLSYR|TL 0.086 . SPCC1259.10 57 TSVSVVR|TS 0.099 . SPCC1259.10 76 ICLNTHR|TI 0.115 . SPCC1259.10 80 THRTISK|YE 0.074 . SPCC1259.10 98 VIHEHQK|NL 0.070 . SPCC1259.10 102 HQKNLAK|VI 0.067 . SPCC1259.10 106 LAKVIQR|TI 0.129 . SPCC1259.10 113 TISDAAR|SG 0.167 . SPCC1259.10 126 DLIAVTR|GP 0.110 . SPCC1259.10 142 VGLNTAK|GL 0.068 . SPCC1259.10 150 LAVGLQK|PL 0.069 . SPCC1259.10 169 LAVQLEK|SI 0.077 . SPCC1259.10 213 VGDYLDK|CA 0.057 . SPCC1259.10 216 YLDKCAK|YL 0.072 . SPCC1259.10 247 STSYSLK|PP 0.071 . SPCC1259.10 255 PIPLNTR|EK 0.065 . SPCC1259.10 257 PLNTREK|VH 0.069 . SPCC1259.10 274 LESYACR|II 0.111 . SPCC1259.10 277 YACRIIR|KT 0.178 . SPCC1259.10 278 ACRIIRK|TP 0.062 . SPCC1259.10 286 PLNLSEK|KF 0.068 . SPCC1259.10 287 LNLSEKK|FF 0.106 . SPCC1259.10 304 FQHICQK|TL 0.059 . SPCC1259.10 310 KTLLALK|RL 0.052 . SPCC1259.10 311 TLLALKR|LD 0.137 . SPCC1259.10 316 KRLDLSK|VK 0.060 . SPCC1259.10 318 LDLSKVK|YL 0.063 . SPCC1259.10 328 CSGGVAR|NE 0.072 . SPCC1259.10 333 ARNELLK|KM 0.061 . SPCC1259.10 334 RNELLKK|ML 0.135 . SPCC1259.10 353 HQPTDIK|LV 0.067 . SPCC1259.10 378 TAIQMFK|AG 0.064 . SPCC1259.10 391 FDVEPIR|KW 0.076 . SPCC1259.10 392 DVEPIRK|WP 0.073 . SPCC1259.10 407 VEGWLTK|KN 0.061 . SPCC1259.10 408 EGWLTKK|NK 0.077 . SPCC1259.10 410 WLTKKNK|KV 0.090 . SPCC1259.10 411 LTKKNKK|V- 0.092 . ____________________________^_________________

  • Fasta :-

    >SPCC1259.10 TTCCCAGCGCTCACCAAACATAAGGGCTAGCATAATGACCCCCTAAATTTGTGAATTGCT TTCAATTTCAACATTAATCGGTTTTTAAGTTACTACTAGATAAGTATTTTGGGAGGGTAA ACGCTACCGATGATATATAGTTTTCGAGAGACTTGGCTTCCTCCTACTGCTCTTATTTCC TAAACTTTTTGTTAAATTCAACGTCTTAGCTCTCACGTAAAAGTGATGTTTTGATTTTTT ATTTACTCTTTTTCGCTTGCAATCATAAAACGAACATCTTACATACGCAACAAACCTATA AAACTTTGAAATTTTTTAAGTTCGGATCTAACACCGAACTCATTATCAAGTTGATGACTT TAATTACAGGGTGTTAGACAATTTGTTATTTTTTTAAATATTATACACTTTCCTTTTCTG GCCAACAGACATATCTCAAATTTGAAGTGAAGTTATATAAATGCTTTGTCTGGTATATAA TTCTATTTTGTGCAAGCAACGTCGAATTTCTTTAAAAGTTTTACAACAGTTTCGCTGTTG GAACATCTCTAAAACTTTTCTATCCTATCGAACACTTACAGCCTTAGCTATCGAGACGTC TTGTGATGATACATCGGTTTCTGTCGTTCGAACCTCAGATTCATCATCACATTGCCAAAA CGAGATCATTTGCTTAAATACACACCGGACAATTTCAAAATACGAGGCTTATGGTGGTAT CCATCCTACCATAGTTATTCATGAGCATCAAAAGAATTTAGCGAAAGTAATCCAAAGGAC TATCTCAGATGCCGCGCGTAGTGGTATTACTGATTTTGACCTTATTGCTGTCACAAGAGG CCCAGGAATGATTGGTCCCCTTGCTGTGGGTTTAAATACAGCCAAAGGCCTCGCGGTTGG CCTTCAAAAACCTTTACTTGCGGTTCATCACATGCAAGCACATGCCCTTGCAGTGCAACT AGAAAAGTCTATTGATTTCCCATATCTTAATATTCTTGTCTCAGGTGGACACACTATGCT AGTGTATTCCAATTCTCTGTTAAATCACGAGATTATTGTCACAACCAGTGATATTGCTGT AGGCGATTATCTGGACAAATGTGCAAAGTATTTGGGTATTCCTTGGGACAATGAAATGCC TGCTGCTGCTCTTGAACAGTTTGCTTCTCCTGAAATAAATAGTACTAGTTATTCATTAAA ACCGCCAATCCCACTGAATACTAGAGAAAAGGTGCATAGCGCGAGCTTCTCTTTTTCAGG CTTGGAGTCGTACGCCTGTCGAATAATAAGGAAGACGCCTTTAAATCTAAGTGAAAAAAA GTTTTTTGCCTATCAACTTCAATATGCTGCTTTTCAACATATATGTCAAAAAACGTTGCT AGCGTTGAAACGACTGGATTTATCGAAAGTTAAGTACCTTGTATGCAGTGGTGGTGTCGC TAGAAACGAATTGTTGAAAAAGATGCTGAATGATACTTTAATGGTATTGCAGTTTGAACA TCAACCTACAGACATCAAATTGGTGTACCCAAGTCCAGATATATGCAGTGATAATGCTGC CATGATAGGCTATACTGCTATTCAAATGTTCAAAGCAGGTTATACATCTTCATTTGATGT TGAGCCCATAAGAAAATGGCCCATCAATCAGATTTTAACCGTTGAAGGTTGGCTTACAAA AAAAAATAAAAAAGTATAAATATTAGAAATTAATAATAGTTTGTACTATGGAACAATGAA TGCATAATGAATGTAAAAATTTTCTATGCCAACAAAAAATAGGGTGAATATGTTGTACGA CATAAAGTAAGAG
  • Download Fasta

  • Fasta :-

    MLCLVYNSILCKQRRISLKVLQQFRCWNISKTFLSYRTLTALAIETSCDDTSVSVVRTSD SSSHCQNEIICLNTHRTISKYEAYGGIHPTIVIHEHQKNLAKVIQRTISDAARSGITDFD LIAVTRGPGMIGPLAVGLNTAKGLAVGLQKPLLAVHHMQAHALAVQLEKSIDFPYLNILV SGGHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKCAKYLGIPWDNEMPAAALEQFASPEIN STSYSLKPPIPLNTREKVHSASFSFSGLESYACRIIRKTPLNLSEKKFFAYQLQYAAFQH ICQKTLLALKRLDLSKVKYLVCSGGVARNELLKKMLNDTLMVLQFEHQPTDIKLVYPSPD ICSDNAAMIGYTAIQMFKAGYTSSFDVEPIRKWPINQILTVEGWLTKKNKKV

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPCC1259.1063 SSDSSSHCQN0.993unspSPCC1259.1063 SSDSSSHCQN0.993unspSPCC1259.1063 SSDSSSHCQN0.993unspSPCC1259.1079 SHRTISKYEA0.997unspSPCC1259.1017 SQRRISLKVL0.997unspSPCC1259.1059 SVVRTSDSSS0.995unsp

SPCC1259.10      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India