SPCC1442.07c | ubiquitin/metalloprotease fusion protein Udp7

_IDPredictionOTHERSPmTPCS_Position
SPCC1442.07cOTHER0.9997950.0000760.000129
No Results

  • Fasta :-

    >SPCC1442.07c MELKFSCRGNVIALSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKGNLSDDSHLQDVVKN ESKIMCLIRQDKDIVNQAISQLKVPDYSTNTYSLKPKKPHTTPKPASIYTFNELVVLDYP HKDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIEL RLRTDRYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYV SDRASYTPQQDNDDEDQKNHRRDLLLAAAERRKQSGSKVQKE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/595 Sequence name : 595 Sequence length : 282 VALUES OF COMPUTED PARAMETERS Coef20 : 3.874 CoefTot : -0.120 ChDiff : -2 ZoneTo : 17 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.029 0.465 -0.278 0.314 MesoH : -1.735 -0.197 -0.719 -0.000 MuHd_075 : 28.073 10.950 6.180 4.183 MuHd_095 : 7.513 7.131 2.359 1.486 MuHd_100 : 12.213 3.579 1.359 2.770 MuHd_105 : 17.934 3.799 4.130 3.599 Hmax_075 : 7.817 10.800 0.118 3.570 Hmax_095 : 3.063 6.500 -0.776 3.518 Hmax_100 : 8.300 9.900 -0.054 4.800 Hmax_105 : 5.500 7.200 -0.309 3.980 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9396 0.0604 DFMC : 0.8779 0.1221
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 282 SPCC1442.07c MELKFSCRGNVIALSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKGNLSDDSHLQDVVKNESKIMCLIRQDKDIVNQAIS 80 QLKVPDYSTNTYSLKPKKPHTTPKPASIYTFNELVVLDYPHKDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEH 160 TRHDSKTLGLNHNQGAHIELRLRTDRYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYV 240 SDRASYTPQQDNDDEDQKNHRRDLLLAAAERRKQSGSKVQKE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPCC1442.07c 4 ---MELK|FS 0.067 . SPCC1442.07c 8 ELKFSCR|GN 0.097 . SPCC1442.07c 26 DTVLDAK|EK 0.063 . SPCC1442.07c 28 VLDAKEK|LG 0.060 . SPCC1442.07c 41 VSPSLIK|LL 0.060 . SPCC1442.07c 45 LIKLLYK|GN 0.060 . SPCC1442.07c 59 HLQDVVK|NE 0.071 . SPCC1442.07c 63 VVKNESK|IM 0.058 . SPCC1442.07c 69 KIMCLIR|QD 0.123 . SPCC1442.07c 72 CLIRQDK|DI 0.170 . SPCC1442.07c 83 QAISQLK|VP 0.061 . SPCC1442.07c 95 TNTYSLK|PK 0.064 . SPCC1442.07c 97 TYSLKPK|KP 0.075 . SPCC1442.07c 98 YSLKPKK|PH 0.089 . SPCC1442.07c 104 KPHTTPK|PA 0.119 . SPCC1442.07c 122 VLDYPHK|DR 0.055 . SPCC1442.07c 124 DYPHKDR|AL 0.094 . SPCC1442.07c 127 HKDRALR|YL 0.303 . SPCC1442.07c 131 ALRYLER|LR 0.080 . SPCC1442.07c 133 RYLERLR|DD 0.085 . SPCC1442.07c 139 RDDTGIK|KI 0.065 . SPCC1442.07c 140 DDTGIKK|IM 0.083 . SPCC1442.07c 146 KIMDSHR|WT 0.117 . SPCC1442.07c 162 DPAEHTR|HD 0.131 . SPCC1442.07c 166 HTRHDSK|TL 0.075 . SPCC1442.07c 181 GAHIELR|LR 0.090 . SPCC1442.07c 183 HIELRLR|TD 0.066 . SPCC1442.07c 186 LRLRTDR|YD 0.213 . SPCC1442.07c 191 DRYDGFR|DY 0.123 . SPCC1442.07c 194 DGFRDYK|TV 0.134 . SPCC1442.07c 197 RDYKTVK|ST 0.097 . SPCC1442.07c 221 SFWELFR|QL 0.091 . SPCC1442.07c 225 LFRQLTK|EA 0.070 . SPCC1442.07c 235 AADLLGK|PG 0.061 . SPCC1442.07c 243 GSYVSDR|AS 0.119 . SPCC1442.07c 258 NDDEDQK|NH 0.056 . SPCC1442.07c 261 EDQKNHR|RD 0.066 . SPCC1442.07c 262 DQKNHRR|DL 0.128 . SPCC1442.07c 271 LLAAAER|RK 0.074 . SPCC1442.07c 272 LAAAERR|KQ 0.167 . SPCC1442.07c 273 AAAERRK|QS 0.099 . SPCC1442.07c 278 RKQSGSK|VQ 0.061 . SPCC1442.07c 281 SGSKVQK|E- 0.080 . ____________________________^_________________

  • Fasta :-

    >SPCC1442.07c ATCAAGTTATTCATTTCGGTTATATTCAGGCCACATCTACCTTACACAGTCTAAATCGTA ATGTATGTATATATATATTAGTACTATTGTCTATTGACTTAACCACTACCAATTAATAAG CAAAAATTACACTACTCTCTTTTCTTCAGTTTTTACTGATAATATCTTTGTTTTTTTTTT ATATTCAGCTCAATTGTTTAATTGGGTCAAACAGATTTAGAAATTTTGCTAATTACCAAA TTCACATGGAGTTGAAATTTAGTTGCAGAGGAAATGTAATTGCTCTTTCATTTAATGAGA ATGATACTGTGCTGGATGCTAAAGAGAAACTTGGCCAAGAAATAGATGTGTCTCCAAGTT TGATTAAGCTGCTCTACAAAGGGAATCTTTCAGATGACTCACATTTACAAGATGTAGTCA AAAACGAATCGAAGATTATGTGTCTAATTAGACAAGATAAAGACATTGTCAATCAAGCCA TTTCTCAATTGAAGGTCCCTGATTATAGCACGAATACATACAGCTTGAAACCGAAGAAGC CTCATACTACACCAAAGCCTGCAAGTATATACACATTTAATGAACTTGTGGTTTTAGATT ATCCTCACAAGGATCGTGCCTTGAGATATTTAGAAAGGCTGCGAGACGATACAGGCATTA AAAAAATTATGGATTCTCATCGCTGGACTGTCCCGTTACTTAGTGAAATGGACCCTGCTG AACATACTCGACATGACTCTAAAACTCTGGGACTCAATCATAATCAAGGTGCACATATTG AATTACGTTTACGTACAGACCGTTACGATGGTTTTCGAGATTACAAAACTGTGAAAAGTA CATTAATTCACGAATTGACGCATAATGTTCATGGAGAACACGACTCCTCCTTTTGGGAGC TGTTTCGTCAACTAACAAAGGAAGCAGATGCAGCAGATTTGCTTGGCAAACCTGGTAGTT ATGTTAGTGACCGAGCTAGTTATACTCCTCAACAGGATAATGACGATGAAGATCAAAAGA ACCACAGACGAGACTTACTGCTGGCCGCTGCGGAGAGGCGGAAGCAATCAGGTAGTAAAG TCCAAAAGGAGTAATGGATTCTTTACTACTTATATTTTCAAATTCCCCTATTTATTGTCT ATGTTTATAGTTTCTTCTAATGAATGCTGTCTTGTTGTTAAACA
  • Download Fasta

  • Fasta :-

    MELKFSCRGNVIALSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKGNLSDDSHLQDVVKN ESKIMCLIRQDKDIVNQAISQLKVPDYSTNTYSLKPKKPHTTPKPASIYTFNELVVLDYP HKDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIEL RLRTDRYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYV SDRASYTPQQDNDDEDQKNHRRDLLLAAAERRKQSGSKVQKE

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPCC1442.07c153 SVPLLSEMDP0.992unspSPCC1442.07c153 SVPLLSEMDP0.992unspSPCC1442.07c153 SVPLLSEMDP0.992unspSPCC1442.07c102 TKPHTTPKPA0.995unspSPCC1442.07c144 SKIMDSHRWT0.992unsp

SPCC1442.07c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India