SPCC4G3.10c | DNA repair protein Rhp42

_IDPredictionOTHERSPmTPCS_Position
SPCC4G3.10cOTHER0.9999940.0000000.000006
No Results

  • Fasta :-

    >SPCC4G3.10c MPPKRKASKNSVRGRKRRTRTNNLPLNPEVKEETVVSSTHRQTRSQSKKPSLSSSAEPPS ESLDDNISALNSLQRSASSSEKGSDEDNEKLGSSEDDEFDDDFDTWEQVDLSPNKQEDKK DLHIVTQHITPQLTKESKKGSSSAMDKSIRLSIHIMHFTCLLYHGSVRNRWLMNSLLLDG LRDLLVEKQPSVVEAWVCSSQTHEDLLKLLNGLRMWWNKSFKIESHGLRKLGYRTLKQGF DIGFSPEIFHNFHEYQASLLSLKGSRDLAAQGFTALCRSLNLKARLIFSLQPLTFSTASY DDWSPHILPEETSTSIDDDLRYPIFWTEIYDQSEKKWIAVDAVVLNGVYTNDMTWFEPKG AYAESKHLRMGIVAAYDNDLYAKDVTLRYTDYQSSRLKKIRHVSFADKYFDFYKAIFGQL AKRNKDAEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTAT FGNGKKATSEEVYLRKDVVICKTPENYHKEGRVIKEGEQPRKMVKARAVTISRKREHEFR VAETNEPVLQGLYSSDQTELYVPPPIKDGIIPKNGYGNMDCFVESMIPKGAAHLPYRGIA KIAKKLNIDYADAVTGFEFRKHRAIPVTTGIIVPEESAQMVYEEFLECEKIRIEKQQMKE RKIIYGQWKHLLNALRIRKRIEEQYA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/535 Sequence name : 535 Sequence length : 686 VALUES OF COMPUTED PARAMETERS Coef20 : 4.581 CoefTot : -0.831 ChDiff : 8 ZoneTo : 28 KR : 10 DE : 0 CleavSite : 20 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.176 1.071 -0.013 0.498 MesoH : -0.655 0.150 -0.443 0.149 MuHd_075 : 25.470 15.938 7.269 5.387 MuHd_095 : 39.131 15.436 9.764 7.408 MuHd_100 : 35.887 12.108 9.251 6.435 MuHd_105 : 34.575 13.701 10.631 5.648 Hmax_075 : -17.617 -4.550 -5.497 -2.730 Hmax_095 : -10.500 -4.300 -4.070 -1.970 Hmax_100 : -17.500 -10.600 -6.500 -3.190 Hmax_105 : -8.517 -6.300 -3.083 -2.112 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0275 0.9725 DFMC : 0.0164 0.9836 This protein is probably imported in mitochondria. f(Ser) = 0.0714 f(Arg) = 0.2143 CMi = 0.19305 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 686 SPCC4G3.10c MPPKRKASKNSVRGRKRRTRTNNLPLNPEVKEETVVSSTHRQTRSQSKKPSLSSSAEPPSESLDDNISALNSLQRSASSS 80 EKGSDEDNEKLGSSEDDEFDDDFDTWEQVDLSPNKQEDKKDLHIVTQHITPQLTKESKKGSSSAMDKSIRLSIHIMHFTC 160 LLYHGSVRNRWLMNSLLLDGLRDLLVEKQPSVVEAWVCSSQTHEDLLKLLNGLRMWWNKSFKIESHGLRKLGYRTLKQGF 240 DIGFSPEIFHNFHEYQASLLSLKGSRDLAAQGFTALCRSLNLKARLIFSLQPLTFSTASYDDWSPHILPEETSTSIDDDL 320 RYPIFWTEIYDQSEKKWIAVDAVVLNGVYTNDMTWFEPKGAYAESKHLRMGIVAAYDNDLYAKDVTLRYTDYQSSRLKKI 400 RHVSFADKYFDFYKAIFGQLAKRNKDAEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTAT 480 FGNGKKATSEEVYLRKDVVICKTPENYHKEGRVIKEGEQPRKMVKARAVTISRKREHEFRVAETNEPVLQGLYSSDQTEL 560 YVPPPIKDGIIPKNGYGNMDCFVESMIPKGAAHLPYRGIAKIAKKLNIDYADAVTGFEFRKHRAIPVTTGIIVPEESAQM 640 VYEEFLECEKIRIEKQQMKERKIIYGQWKHLLNALRIRKRIEEQYA 720 .................P.........................P.................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .............................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ SPCC4G3.10c 4 ---MPPK|RK 0.058 . SPCC4G3.10c 5 --MPPKR|KA 0.251 . SPCC4G3.10c 6 -MPPKRK|AS 0.087 . SPCC4G3.10c 9 PKRKASK|NS 0.068 . SPCC4G3.10c 13 ASKNSVR|GR 0.093 . SPCC4G3.10c 15 KNSVRGR|KR 0.115 . SPCC4G3.10c 16 NSVRGRK|RR 0.128 . SPCC4G3.10c 17 SVRGRKR|RT 0.160 . SPCC4G3.10c 18 VRGRKRR|TR 0.564 *ProP* SPCC4G3.10c 20 GRKRRTR|TN 0.229 . SPCC4G3.10c 31 PLNPEVK|EE 0.065 . SPCC4G3.10c 41 VVSSTHR|QT 0.099 . SPCC4G3.10c 44 STHRQTR|SQ 0.621 *ProP* SPCC4G3.10c 48 QTRSQSK|KP 0.062 . SPCC4G3.10c 49 TRSQSKK|PS 0.145 . SPCC4G3.10c 75 ALNSLQR|SA 0.258 . SPCC4G3.10c 82 SASSSEK|GS 0.076 . SPCC4G3.10c 90 SDEDNEK|LG 0.063 . SPCC4G3.10c 115 VDLSPNK|QE 0.062 . SPCC4G3.10c 119 PNKQEDK|KD 0.062 . SPCC4G3.10c 120 NKQEDKK|DL 0.171 . SPCC4G3.10c 135 ITPQLTK|ES 0.058 . SPCC4G3.10c 138 QLTKESK|KG 0.062 . SPCC4G3.10c 139 LTKESKK|GS 0.144 . SPCC4G3.10c 147 SSSAMDK|SI 0.121 . SPCC4G3.10c 150 AMDKSIR|LS 0.089 . SPCC4G3.10c 168 LYHGSVR|NR 0.074 . SPCC4G3.10c 170 HGSVRNR|WL 0.133 . SPCC4G3.10c 182 LLLDGLR|DL 0.075 . SPCC4G3.10c 188 RDLLVEK|QP 0.069 . SPCC4G3.10c 208 THEDLLK|LL 0.065 . SPCC4G3.10c 214 KLLNGLR|MW 0.069 . SPCC4G3.10c 219 LRMWWNK|SF 0.102 . SPCC4G3.10c 222 WWNKSFK|IE 0.087 . SPCC4G3.10c 229 IESHGLR|KL 0.096 . SPCC4G3.10c 230 ESHGLRK|LG 0.077 . SPCC4G3.10c 234 LRKLGYR|TL 0.128 . SPCC4G3.10c 237 LGYRTLK|QG 0.156 . SPCC4G3.10c 263 ASLLSLK|GS 0.061 . SPCC4G3.10c 266 LSLKGSR|DL 0.123 . SPCC4G3.10c 278 GFTALCR|SL 0.101 . SPCC4G3.10c 283 CRSLNLK|AR 0.061 . SPCC4G3.10c 285 SLNLKAR|LI 0.131 . SPCC4G3.10c 321 SIDDDLR|YP 0.069 . SPCC4G3.10c 335 IYDQSEK|KW 0.060 . SPCC4G3.10c 336 YDQSEKK|WI 0.095 . SPCC4G3.10c 359 MTWFEPK|GA 0.084 . SPCC4G3.10c 366 GAYAESK|HL 0.086 . SPCC4G3.10c 369 AESKHLR|MG 0.111 . SPCC4G3.10c 383 DNDLYAK|DV 0.076 . SPCC4G3.10c 388 AKDVTLR|YT 0.098 . SPCC4G3.10c 396 TDYQSSR|LK 0.084 . SPCC4G3.10c 398 YQSSRLK|KI 0.068 . SPCC4G3.10c 399 QSSRLKK|IR 0.442 . SPCC4G3.10c 401 SRLKKIR|HV 0.213 . SPCC4G3.10c 408 HVSFADK|YF 0.076 . SPCC4G3.10c 414 KYFDFYK|AI 0.077 . SPCC4G3.10c 422 IFGQLAK|RN 0.066 . SPCC4G3.10c 423 FGQLAKR|NK 0.155 . SPCC4G3.10c 425 QLAKRNK|DA 0.114 . SPCC4G3.10c 434 EDIYEEK|EL 0.064 . SPCC4G3.10c 439 EKELESK|VP 0.057 . SPCC4G3.10c 443 ESKVPIR|EP 0.078 . SPCC4G3.10c 446 VPIREPK|SF 0.244 . SPCC4G3.10c 452 KSFADFK|NH 0.057 . SPCC4G3.10c 461 PEFVLIR|HL 0.100 . SPCC4G3.10c 464 VLIRHLR|RE 0.253 . SPCC4G3.10c 465 LIRHLRR|EE 0.097 . SPCC4G3.10c 474 ALLPNAK|PV 0.076 . SPCC4G3.10c 477 PNAKPVK|TA 0.075 . SPCC4G3.10c 485 ATFGNGK|KA 0.066 . SPCC4G3.10c 486 TFGNGKK|AT 0.108 . SPCC4G3.10c 495 SEEVYLR|KD 0.080 . SPCC4G3.10c 496 EEVYLRK|DV 0.104 . SPCC4G3.10c 502 KDVVICK|TP 0.060 . SPCC4G3.10c 509 TPENYHK|EG 0.070 . SPCC4G3.10c 512 NYHKEGR|VI 0.124 . SPCC4G3.10c 515 KEGRVIK|EG 0.172 . SPCC4G3.10c 521 KEGEQPR|KM 0.093 . SPCC4G3.10c 522 EGEQPRK|MV 0.109 . SPCC4G3.10c 525 QPRKMVK|AR 0.062 . SPCC4G3.10c 527 RKMVKAR|AV 0.367 . SPCC4G3.10c 533 RAVTISR|KR 0.081 . SPCC4G3.10c 534 AVTISRK|RE 0.070 . SPCC4G3.10c 535 VTISRKR|EH 0.113 . SPCC4G3.10c 540 KREHEFR|VA 0.193 . SPCC4G3.10c 567 YVPPPIK|DG 0.061 . SPCC4G3.10c 573 KDGIIPK|NG 0.067 . SPCC4G3.10c 589 VESMIPK|GA 0.078 . SPCC4G3.10c 597 AAHLPYR|GI 0.124 . SPCC4G3.10c 601 PYRGIAK|IA 0.071 . SPCC4G3.10c 604 GIAKIAK|KL 0.068 . SPCC4G3.10c 605 IAKIAKK|LN 0.102 . SPCC4G3.10c 620 VTGFEFR|KH 0.092 . SPCC4G3.10c 621 TGFEFRK|HR 0.080 . SPCC4G3.10c 623 FEFRKHR|AI 0.261 . SPCC4G3.10c 650 EFLECEK|IR 0.052 . SPCC4G3.10c 652 LECEKIR|IE 0.105 . SPCC4G3.10c 655 EKIRIEK|QQ 0.137 . SPCC4G3.10c 659 IEKQQMK|ER 0.066 . SPCC4G3.10c 661 KQQMKER|KI 0.122 . SPCC4G3.10c 662 QQMKERK|II 0.131 . SPCC4G3.10c 669 IIYGQWK|HL 0.073 . SPCC4G3.10c 676 HLLNALR|IR 0.090 . SPCC4G3.10c 678 LNALRIR|KR 0.091 . SPCC4G3.10c 679 NALRIRK|RI 0.195 . SPCC4G3.10c 680 ALRIRKR|IE 0.190 . ____________________________^_________________

  • Fasta :-

    >SPCC4G3.10c CTGCTGTGCAAAATCAGTCGTCGATTTAAAATTCCTATTTTTAGGAAATATAAGCTCGAT CAGTGACATAAATTTAAACAGTTTCGTTTGACGTTTTACTAATTAATGAATTATTTCCTT AAAATTTAACGGCTGAAGTTTTTTTTGACTTATGTTTATTGTCTCTTATTAATAGTGATG CATGTGGTTTAACTTTTTATTTAATAATTTATTTTCATGTTATGTTTCAGATTTAAATTT TTTAAATCTTTATTTCACGGTTGAAATCAAAAGTAGTTAATATAGCTCATAATATTCAGC AAACAAACTACTCGCCATTCTTGCGCAGTTGATACTGACCTCTTTTTCAAAGGACTTTTT AATAATCATCATCACAGCCATTGTTAGAATTTTGCTTTCTTGTTGGAGAGATTGCTTGAA ATAATAATTCTTTAACTAAGAATATATCAGATGTGGCTGTGATTACAACTTTTTATTCAA TTTATCGTTATTGATATTATTTGAACCAGCGGTTAAACAAGCATTATCCTAAAGTTGATT CAATTCACATAAACTCTTTGCTCAATGCCACCCAAACGCAAAGCATCCAAGAACTCTGTT CGCGGAAGGAAACGTAGGACACGGACCAATAACTTACCTCTTAATCCTGAAGTGAAAGAG GAAACTGTTGTATCTTCAACTCACCGTCAAACTCGTAGCCAGTCGAAAAAGCCAAGTTTG TCTTCCTCAGCGGAACCTCCTTCTGAGAGTTTAGATGACAATATATCAGCGTTAAACTCA CTTCAAAGGAGCGCATCTTCATCCGAAAAAGGTTCCGATGAAGACAATGAGAAGTTAGGC AGCTCAGAAGATGACGAGTTTGACGACGATTTTGACACTTGGGAACAAGTTGATCTTTCT CCTAATAAACAAGAAGATAAAAAAGATTTACACATAGTCACACAGCATATCACTCCTCAA CTTACAAAAGAATCGAAGAAAGGCTCTTCTAGTGCAATGGATAAAAGCATTCGATTATCT ATTCACATTATGCACTTTACTTGCTTGTTGTACCATGGGTCAGTAAGGAATCGCTGGTTA ATGAATTCCTTACTTCTTGATGGGCTGCGCGATTTGCTTGTCGAAAAGCAACCGTCCGTA GTGGAGGCGTGGGTTTGTAGTAGCCAGACGCACGAGGATTTGTTAAAATTGTTAAATGGG CTTCGGATGTGGTGGAATAAATCTTTTAAAATTGAGAGTCATGGGCTTCGGAAGTTGGGG TATCGTACTTTGAAACAAGGATTTGATATCGGCTTTTCGCCAGAAATATTTCATAACTTT CATGAATACCAAGCATCCTTACTTTCGCTAAAAGGAAGCCGGGATTTGGCGGCACAGGGA TTTACTGCTCTCTGTCGATCTCTGAATCTGAAAGCAAGACTTATATTTTCTCTTCAACCT TTGACATTTTCTACTGCTTCCTATGATGATTGGTCTCCACATATCCTCCCTGAAGAAACT AGTACATCTATAGATGACGACCTCCGCTATCCTATTTTTTGGACGGAAATCTATGATCAA AGTGAGAAGAAATGGATTGCGGTAGATGCGGTTGTCTTGAATGGGGTATATACCAACGAT ATGACTTGGTTTGAACCCAAAGGAGCGTATGCAGAGTCAAAACATCTACGAATGGGTATT GTTGCTGCATATGATAACGATTTATACGCAAAAGATGTAACTTTGAGGTATACAGATTAC CAATCAAGTAGGCTTAAGAAAATTCGACACGTTTCTTTTGCAGATAAGTATTTTGATTTT TATAAGGCTATTTTTGGGCAACTAGCAAAGCGCAATAAAGATGCAGAGGATATATATGAA GAGAAAGAACTGGAAAGTAAAGTGCCCATTCGCGAACCTAAAAGCTTTGCAGATTTTAAG AATCATCCTGAATTTGTATTGATTAGACATCTTAGAAGAGAAGAAGCATTGCTTCCTAAC GCCAAGCCTGTGAAGACAGCAACCTTTGGTAACGGTAAGAAAGCTACCTCTGAGGAAGTG TATCTCCGAAAAGATGTGGTCATATGCAAAACGCCTGAAAATTATCACAAAGAAGGACGA GTAATTAAGGAAGGAGAACAACCTCGAAAAATGGTGAAGGCGAGAGCCGTCACAATTAGC AGGAAGCGTGAACACGAATTTCGGGTTGCTGAAACAAATGAACCAGTGCTTCAGGGTCTA TATTCTTCCGATCAAACTGAGCTATATGTTCCGCCTCCAATCAAAGATGGTATTATTCCT AAGAACGGTTATGGTAATATGGATTGTTTTGTTGAGAGCATGATCCCCAAGGGCGCAGCA CATTTGCCATATCGAGGAATTGCTAAAATTGCCAAGAAACTCAACATTGATTATGCGGAT GCAGTTACAGGGTTTGAATTTCGTAAACATCGTGCGATTCCAGTTACTACAGGTATAATT GTACCTGAAGAGTCGGCTCAAATGGTTTACGAAGAATTTCTTGAGTGTGAAAAAATCAGA ATAGAGAAGCAGCAGATGAAAGAGAGAAAAATTATTTATGGGCAGTGGAAACACTTGCTA AATGCACTTCGTATTCGAAAGCGTATTGAAGAACAATATGCTTAATTCCTGGCTTTCGTC GGACACTTTAGGGTTTGTATAACCGGATGTGTGTTTTTTGAACAATGAGGATACTTAATT CCAAACGTTAGACTCATTTATTTATTTATTGTTTTGCAAAATTGACATTTGGTTATTTGT GAAGTATTTTATTTATTTAAAGGAAAAAGAGGAAGCAAACTACCAAATTATCTAATATTT TATTGATTTAAAAAACCCCAGATTTTTATAGCACTATTTTTCATATTGGTGGATCACACT CTATTTTTCGCTTTATAGATCACCCAATTGCATTACCTTGCCAATCGTACTACAAATTTT TTGTTTGAAGGAACAACGACTTAATAAAATAAAATAAAAATAAAAATAAAAATTTTCATT ACACGGTAA
  • Download Fasta

  • Fasta :-

    MPPKRKASKNSVRGRKRRTRTNNLPLNPEVKEETVVSSTHRQTRSQSKKPSLSSSAEPPS ESLDDNISALNSLQRSASSSEKGSDEDNEKLGSSEDDEFDDDFDTWEQVDLSPNKQEDKK DLHIVTQHITPQLTKESKKGSSSAMDKSIRLSIHIMHFTCLLYHGSVRNRWLMNSLLLDG LRDLLVEKQPSVVEAWVCSSQTHEDLLKLLNGLRMWWNKSFKIESHGLRKLGYRTLKQGF DIGFSPEIFHNFHEYQASLLSLKGSRDLAAQGFTALCRSLNLKARLIFSLQPLTFSTASY DDWSPHILPEETSTSIDDDLRYPIFWTEIYDQSEKKWIAVDAVVLNGVYTNDMTWFEPKG AYAESKHLRMGIVAAYDNDLYAKDVTLRYTDYQSSRLKKIRHVSFADKYFDFYKAIFGQL AKRNKDAEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTAT FGNGKKATSEEVYLRKDVVICKTPENYHKEGRVIKEGEQPRKMVKARAVTISRKREHEFR VAETNEPVLQGLYSSDQTELYVPPPIKDGIIPKNGYGNMDCFVESMIPKGAAHLPYRGIA KIAKKLNIDYADAVTGFEFRKHRAIPVTTGIIVPEESAQMVYEEFLECEKIRIEKQQMKE RKIIYGQWKHLLNALRIRKRIEEQYA

    No Results
IDSitePositionGscoreIscore
SPCC4G3.10cT430.5480.028
IDSitePositionGscoreIscore
SPCC4G3.10cT430.5480.028
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPCC4G3.10c80 SSASSSEKGS0.997unspSPCC4G3.10c80 SSASSSEKGS0.997unspSPCC4G3.10c80 SSASSSEKGS0.997unspSPCC4G3.10c84 SSEKGSDEDN0.998unspSPCC4G3.10c93 SEKLGSSEDD0.997unspSPCC4G3.10c94 SKLGSSEDDE0.995unspSPCC4G3.10c143 SKGSSSAMDK0.994unspSPCC4G3.10c299 SFSTASYDDW0.99unspSPCC4G3.10c315 SETSTSIDDD0.992unspSPCC4G3.10c447 SREPKSFADF0.995unspSPCC4G3.10c489 SKKATSEEVY0.992unspSPCC4G3.10c47 STRSQSKKPS0.994unspSPCC4G3.10c78 SQRSASSSEK0.993unsp

SPCC4G3.10c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India