TA11975 | mitochondrial processing peptidase alpha subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TA11975mTP0.4064150.0006990.592885CS pos: 20-21. RRF-TT. Pr: 0.8321
No Results

  • Fasta :-

    >TA11975 MRGLLGNIGGLIRSNRIRRFTTLDKIHKDPPDYKKVPFLKEDLDSVLSEVPEFNFYYFGS TTDKDYPYKNVPMNEPIYVTGSEGKFTPLDHKFQYAKLENGLRIATLDKGGLDTHLALYV NAGSAHENDQNQGVTSMIENMAFHSTAHLSHLRTIKTVETLGANVSCNAFREHTVYQAEF LRQDLPFLVNLLVGNVLFPRFLTWELAANKHRLSEKRNKVLENPDQLVTEHLHSVAWHNN TLGNFNFCLEPSEDKYTPELMRDFMLNHFYPQNCVLVSVNSGLDELSKWAMRAFSEYNPI PNPSGEVPKLEPKYTGGVKYVEGNTPFTHVTVAYPVKGWDSKQVVVTTLLQSILGGGGSF STGGPGKGLTTSLYNNVLNRYEFVESCMAFNTVHSTSGLFGIYLVVNGAYASGNLDQVFT LVKDEFERMKRITNHELSGGKNSLKSFLHMSMEHKAVLCEDVGRQLLFCNRVLDASDLEN LIDEVTLDDLKSVVNELRVNLNPSVVVYGKLSKVPHPDTVLQLLH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA11975.fa Sequence name : TA11975 Sequence length : 525 VALUES OF COMPUTED PARAMETERS Coef20 : 4.539 CoefTot : 0.007 ChDiff : -8 ZoneTo : 23 KR : 5 DE : 0 CleavSite : 28 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.559 1.518 0.227 0.577 MesoH : 0.336 0.443 -0.152 0.313 MuHd_075 : 19.515 9.944 3.536 4.273 MuHd_095 : 18.980 18.381 4.749 5.196 MuHd_100 : 18.623 14.932 2.801 4.522 MuHd_105 : 30.822 15.904 5.958 6.485 Hmax_075 : 7.233 7.600 -0.334 1.050 Hmax_095 : 3.900 13.600 -0.290 3.920 Hmax_100 : 13.200 18.800 1.959 5.960 Hmax_105 : 6.500 7.000 0.430 3.600 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1102 0.8898 DFMC : 0.1951 0.8049 This protein is probably imported in mitochondria. f(Ser) = 0.0435 f(Arg) = 0.2174 CMi = 0.11614 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 525 TA11975 MRGLLGNIGGLIRSNRIRRFTTLDKIHKDPPDYKKVPFLKEDLDSVLSEVPEFNFYYFGSTTDKDYPYKNVPMNEPIYVT 80 GSEGKFTPLDHKFQYAKLENGLRIATLDKGGLDTHLALYVNAGSAHENDQNQGVTSMIENMAFHSTAHLSHLRTIKTVET 160 LGANVSCNAFREHTVYQAEFLRQDLPFLVNLLVGNVLFPRFLTWELAANKHRLSEKRNKVLENPDQLVTEHLHSVAWHNN 240 TLGNFNFCLEPSEDKYTPELMRDFMLNHFYPQNCVLVSVNSGLDELSKWAMRAFSEYNPIPNPSGEVPKLEPKYTGGVKY 320 VEGNTPFTHVTVAYPVKGWDSKQVVVTTLLQSILGGGGSFSTGGPGKGLTTSLYNNVLNRYEFVESCMAFNTVHSTSGLF 400 GIYLVVNGAYASGNLDQVFTLVKDEFERMKRITNHELSGGKNSLKSFLHMSMEHKAVLCEDVGRQLLFCNRVLDASDLEN 480 LIDEVTLDDLKSVVNELRVNLNPSVVVYGKLSKVPHPDTVLQLLH 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA11975 2 -----MR|GL 0.109 . TA11975 13 NIGGLIR|SN 0.115 . TA11975 16 GLIRSNR|IR 0.181 . TA11975 18 IRSNRIR|RF 0.116 . TA11975 19 RSNRIRR|FT 0.490 . TA11975 25 RFTTLDK|IH 0.054 . TA11975 28 TLDKIHK|DP 0.066 . TA11975 34 KDPPDYK|KV 0.063 . TA11975 35 DPPDYKK|VP 0.083 . TA11975 40 KKVPFLK|ED 0.066 . TA11975 64 FGSTTDK|DY 0.070 . TA11975 69 DKDYPYK|NV 0.078 . TA11975 85 VTGSEGK|FT 0.060 . TA11975 92 FTPLDHK|FQ 0.064 . TA11975 97 HKFQYAK|LE 0.061 . TA11975 103 KLENGLR|IA 0.076 . TA11975 109 RIATLDK|GG 0.058 . TA11975 153 AHLSHLR|TI 0.092 . TA11975 156 SHLRTIK|TV 0.211 . TA11975 171 VSCNAFR|EH 0.093 . TA11975 182 YQAEFLR|QD 0.080 . TA11975 200 GNVLFPR|FL 0.123 . TA11975 210 WELAANK|HR 0.053 . TA11975 212 LAANKHR|LS 0.104 . TA11975 216 KHRLSEK|RN 0.064 . TA11975 217 HRLSEKR|NK 0.154 . TA11975 219 LSEKRNK|VL 0.064 . TA11975 255 LEPSEDK|YT 0.062 . TA11975 262 YTPELMR|DF 0.084 . TA11975 288 GLDELSK|WA 0.070 . TA11975 292 LSKWAMR|AF 0.110 . TA11975 309 PSGEVPK|LE 0.065 . TA11975 313 VPKLEPK|YT 0.082 . TA11975 319 KYTGGVK|YV 0.079 . TA11975 337 TVAYPVK|GW 0.084 . TA11975 342 VKGWDSK|QV 0.069 . TA11975 367 STGGPGK|GL 0.081 . TA11975 380 YNNVLNR|YE 0.098 . TA11975 423 QVFTLVK|DE 0.060 . TA11975 428 VKDEFER|MK 0.085 . TA11975 430 DEFERMK|RI 0.067 . TA11975 431 EFERMKR|IT 0.493 . TA11975 441 HELSGGK|NS 0.056 . TA11975 445 GGKNSLK|SF 0.074 . TA11975 455 HMSMEHK|AV 0.084 . TA11975 464 LCEDVGR|QL 0.083 . TA11975 471 QLLFCNR|VL 0.076 . TA11975 491 VTLDDLK|SV 0.069 . TA11975 498 SVVNELR|VN 0.064 . TA11975 510 SVVVYGK|LS 0.058 . TA11975 513 VYGKLSK|VP 0.055 . ____________________________^_________________

  • Fasta :-

    >TA11975 ATGAGGGGACTTTTAGGAAATATTGGTGGTTTAATTCGTTCCAATAGAATTAGACGATTT ACCACCTTGGATAAAATACACAAGGACCCTCCAGACTATAAAAAAGTCCCATTTTTAAAA GAAGATCTCGATTCAGTACTATCAGAGGTCCCAGAGTTCAATTTCTATTATTTCGGATCA ACCACAGATAAAGATTACCCATATAAAAATGTTCCCATGAATGAGCCCATTTATGTAACA GGCTCCGAGGGAAAGTTTACACCTTTAGATCACAAATTTCAGTACGCAAAGCTGGAAAAT GGATTAAGGATTGCAACATTGGATAAGGGAGGACTAGATACACATTTAGCACTGTACGTA AATGCCGGATCAGCCCATGAAAATGATCAGAATCAAGGAGTCACCTCGATGATAGAGAAT ATGGCCTTCCATAGCACTGCACACTTGTCCCACCTTAGAACTATTAAAACCGTTGAGACT TTGGGAGCAAACGTTAGCTGCAACGCTTTTCGAGAACATACAGTCTACCAAGCTGAGTTT CTGAGACAAGACCTACCATTTCTAGTTAACCTTTTAGTTGGAAATGTATTGTTTCCACGT TTTCTTACATGGGAGCTGGCGGCAAATAAGCATAGGCTGTCTGAGAAGAGGAACAAAGTT TTGGAGAACCCAGACCAACTAGTTACTGAACATCTACATAGCGTGGCATGGCATAACAAC ACTCTTGGCAACTTCAATTTCTGCTTAGAGCCAAGCGAAGATAAATACACCCCCGAACTA ATGAGAGACTTCATGCTTAACCATTTTTATCCCCAAAACTGTGTGCTGGTGTCCGTTAAT TCAGGACTCGATGAACTTTCAAAATGGGCCATGAGAGCTTTCTCCGAATACAATCCAATT CCAAACCCGTCAGGTGAAGTTCCTAAATTGGAGCCTAAATACACTGGGGGTGTGAAGTAT GTAGAAGGTAATACACCTTTTACACACGTGACAGTCGCTTATCCTGTGAAAGGATGGGAT AGTAAGCAGGTAGTCGTTACGACTCTTTTGCAGTCGATTTTGGGTGGTGGAGGAAGTTTT AGCACAGGAGGTCCTGGAAAAGGCCTTACAACTAGCCTTTACAACAATGTCCTTAACAGG TACGAGTTTGTGGAAAGTTGCATGGCATTTAACACAGTCCACTCAACGAGTGGACTTTTC GGCATTTATTTAGTGGTTAATGGAGCCTACGCCTCTGGGAACCTTGACCAAGTTTTCACT CTCGTCAAAGACGAGTTCGAGAGAATGAAAAGGATAACCAACCATGAACTTTCCGGCGGG AAAAACAGCCTTAAATCATTCCTTCACATGAGCATGGAACACAAAGCGGTGTTGTGCGAG GACGTTGGTAGGCAGCTTCTTTTTTGTAACAGGGTTCTGGATGCTTCTGACTTGGAAAAC CTAATTGACGAAGTAACTCTCGATGACCTAAAATCTGTTGTAAATGAACTTAGGGTTAAC CTGAATCCGAGCGTTGTTGTTTATGGTAAACTCTCCAAGGTCCCTCACCCAGACACTGTC TTGCAGCTTTTGCACTGA
  • Download Fasta

  • Fasta :-

    MRGLLGNIGGLIRSNRIRRFTTLDKIHKDPPDYKKVPFLKEDLDSVLSEVPEFNFYYFGS TTDKDYPYKNVPMNEPIYVTGSEGKFTPLDHKFQYAKLENGLRIATLDKGGLDTHLALYV NAGSAHENDQNQGVTSMIENMAFHSTAHLSHLRTIKTVETLGANVSCNAFREHTVYQAEF LRQDLPFLVNLLVGNVLFPRFLTWELAANKHRLSEKRNKVLENPDQLVTEHLHSVAWHNN TLGNFNFCLEPSEDKYTPELMRDFMLNHFYPQNCVLVSVNSGLDELSKWAMRAFSEYNPI PNPSGEVPKLEPKYTGGVKYVEGNTPFTHVTVAYPVKGWDSKQVVVTTLLQSILGGGGSF STGGPGKGLTTSLYNNVLNRYEFVESCMAFNTVHSTSGLFGIYLVVNGAYASGNLDQVFT LVKDEFERMKRITNHELSGGKNSLKSFLHMSMEHKAVLCEDVGRQLLFCNRVLDASDLEN LIDEVTLDDLKSVVNELRVNLNPSVVVYGKLSKVPHPDTVLQLLH

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
TA11975214 SKHRLSEKRN0.998unspTA11975295 SMRAFSEYNP0.991unsp

TA11975      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India