TA13125 | mitochondrial respiratory chain complexes assembly protein (AFG3 homologue), putative

_IDPredictionOTHERSPmTPCS_Position
TA13125OTHER0.6627040.0007080.336589
No Results

  • Fasta :-

    >TA13125 MVHPCASHCNVLVYSISSRFLKCFPLSLVRFSKNHPVNFSPKLHRLLFCRNCHTLLNRKF ITNNSYTINNFNFTKGEFSTQSSSNTNKTTDPNKQLNDQNKESDDGNKNFKNEVKEEVKN EVKEDRKDEKIKGEKVFNLSDFKKSYEKDKNDEEFKEEPKSRFWRFFDPSTMFAVGLGAI MVLELIDTGVLKNEITFQEFLSKYFIKGYVDRIQVVNKDFCRCYLSDLSPIKTPKFVSFR LGSIDAFEQKIDDIQGSMGLHPQNYIPIHYVNEVNFLAEVKKITPFVLVTLLLAMGVRKI SVKSSSGMDRFLKMGKASPLEGRDVKVNVKFEDVAGMREAKCEITEFVDFLRSPKTYESY GAKIPKGVLLCGAPGTGKTLLAKAVAGEANVPFYSMSGSDFIEVFVGVGPSRVRDLFEKA RKNAPSIVFIDEIDAIGRKRSKSGFNAGSNDERENTLNQLLVEMDGFKSSSGVIVLAGTN RADILDPALTRPGRFDRTVNISRPDLEERYEIFKVHLKPIKINTSSPVGSDKTAENVDKN AEKNKVMDEFARKLAALTPNFVGAEIANVCNEAAIQAARRKSANGVEMVDFDNAIERVMA GMKKSGDILTPQQKLAVAYHEVGHALVGWFLENADPVLKVSIIPRSSGALGFNQQMPDDS MLFTRDALLDKIAVILGGRAAEDIFIGKITTGATDDLSKVTKMCYAFVSQWGMNKEIGLV SFQRDNTDDPYFYRNYSENTAQLIDQQVRTIIEDQYLRVKKMLLGKAELVHKLSKLLYDK ETITYQDIVQCVGEREFPIKDKYKPYIEVNCNDNVKND
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA13125.fa Sequence name : TA13125 Sequence length : 818 VALUES OF COMPUTED PARAMETERS Coef20 : 4.321 CoefTot : -2.187 ChDiff : 8 ZoneTo : 90 KR : 11 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.712 1.953 0.245 0.706 MesoH : -0.461 0.437 -0.322 0.250 MuHd_075 : 33.516 24.023 10.553 8.759 MuHd_095 : 44.793 23.580 10.659 9.992 MuHd_100 : 45.793 22.977 10.006 9.524 MuHd_105 : 35.285 20.937 7.647 7.401 Hmax_075 : 13.200 19.000 3.876 6.220 Hmax_095 : 17.900 21.100 3.472 6.920 Hmax_100 : 17.900 23.600 2.289 5.440 Hmax_105 : 14.000 24.500 7.226 4.360 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1358 0.8642 DFMC : 0.0933 0.9067 This protein is probably imported in mitochondria. f(Ser) = 0.1333 f(Arg) = 0.0556 CMi = 0.90226 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 818 TA13125 MVHPCASHCNVLVYSISSRFLKCFPLSLVRFSKNHPVNFSPKLHRLLFCRNCHTLLNRKFITNNSYTINNFNFTKGEFST 80 QSSSNTNKTTDPNKQLNDQNKESDDGNKNFKNEVKEEVKNEVKEDRKDEKIKGEKVFNLSDFKKSYEKDKNDEEFKEEPK 160 SRFWRFFDPSTMFAVGLGAIMVLELIDTGVLKNEITFQEFLSKYFIKGYVDRIQVVNKDFCRCYLSDLSPIKTPKFVSFR 240 LGSIDAFEQKIDDIQGSMGLHPQNYIPIHYVNEVNFLAEVKKITPFVLVTLLLAMGVRKISVKSSSGMDRFLKMGKASPL 320 EGRDVKVNVKFEDVAGMREAKCEITEFVDFLRSPKTYESYGAKIPKGVLLCGAPGTGKTLLAKAVAGEANVPFYSMSGSD 400 FIEVFVGVGPSRVRDLFEKARKNAPSIVFIDEIDAIGRKRSKSGFNAGSNDERENTLNQLLVEMDGFKSSSGVIVLAGTN 480 RADILDPALTRPGRFDRTVNISRPDLEERYEIFKVHLKPIKINTSSPVGSDKTAENVDKNAEKNKVMDEFARKLAALTPN 560 FVGAEIANVCNEAAIQAARRKSANGVEMVDFDNAIERVMAGMKKSGDILTPQQKLAVAYHEVGHALVGWFLENADPVLKV 640 SIIPRSSGALGFNQQMPDDSMLFTRDALLDKIAVILGGRAAEDIFIGKITTGATDDLSKVTKMCYAFVSQWGMNKEIGLV 720 SFQRDNTDDPYFYRNYSENTAQLIDQQVRTIIEDQYLRVKKMLLGKAELVHKLSKLLYDKETITYQDIVQCVGEREFPIK 800 DKYKPYIEVNCNDNVKND 880 ................................................................................ 80 ................................................................................ 160 ....P........................................................................... 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................P............................................................... 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 .................. 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ TA13125 19 VYSISSR|FL 0.100 . TA13125 22 ISSRFLK|CF 0.162 . TA13125 30 FPLSLVR|FS 0.072 . TA13125 33 SLVRFSK|NH 0.110 . TA13125 42 PVNFSPK|LH 0.059 . TA13125 45 FSPKLHR|LL 0.083 . TA13125 50 HRLLFCR|NC 0.104 . TA13125 58 CHTLLNR|KF 0.073 . TA13125 59 HTLLNRK|FI 0.073 . TA13125 75 NNFNFTK|GE 0.069 . TA13125 88 SSSNTNK|TT 0.084 . TA13125 94 KTTDPNK|QL 0.068 . TA13125 101 QLNDQNK|ES 0.097 . TA13125 108 ESDDGNK|NF 0.058 . TA13125 111 DGNKNFK|NE 0.063 . TA13125 115 NFKNEVK|EE 0.060 . TA13125 119 EVKEEVK|NE 0.053 . TA13125 123 EVKNEVK|ED 0.058 . TA13125 126 NEVKEDR|KD 0.102 . TA13125 127 EVKEDRK|DE 0.077 . TA13125 130 EDRKDEK|IK 0.079 . TA13125 132 RKDEKIK|GE 0.066 . TA13125 135 EKIKGEK|VF 0.054 . TA13125 143 FNLSDFK|KS 0.055 . TA13125 144 NLSDFKK|SY 0.252 . TA13125 148 FKKSYEK|DK 0.073 . TA13125 150 KSYEKDK|ND 0.071 . TA13125 156 KNDEEFK|EE 0.060 . TA13125 160 EFKEEPK|SR 0.069 . TA13125 162 KEEPKSR|FW 0.138 . TA13125 165 PKSRFWR|FF 0.670 *ProP* TA13125 192 IDTGVLK|NE 0.060 . TA13125 203 FQEFLSK|YF 0.070 . TA13125 207 LSKYFIK|GY 0.080 . TA13125 212 IKGYVDR|IQ 0.083 . TA13125 218 RIQVVNK|DF 0.081 . TA13125 222 VNKDFCR|CY 0.080 . TA13125 232 SDLSPIK|TP 0.053 . TA13125 235 SPIKTPK|FV 0.127 . TA13125 240 PKFVSFR|LG 0.082 . TA13125 250 IDAFEQK|ID 0.082 . TA13125 281 NFLAEVK|KI 0.059 . TA13125 282 FLAEVKK|IT 0.120 . TA13125 298 LLAMGVR|KI 0.094 . TA13125 299 LAMGVRK|IS 0.087 . TA13125 303 VRKISVK|SS 0.102 . TA13125 310 SSSGMDR|FL 0.164 . TA13125 313 GMDRFLK|MG 0.112 . TA13125 316 RFLKMGK|AS 0.061 . TA13125 323 ASPLEGR|DV 0.148 . TA13125 326 LEGRDVK|VN 0.112 . TA13125 330 DVKVNVK|FE 0.066 . TA13125 338 EDVAGMR|EA 0.090 . TA13125 341 AGMREAK|CE 0.173 . TA13125 352 EFVDFLR|SP 0.107 . TA13125 355 DFLRSPK|TY 0.105 . TA13125 363 YESYGAK|IP 0.069 . TA13125 366 YGAKIPK|GV 0.083 . TA13125 378 GAPGTGK|TL 0.057 . TA13125 383 GKTLLAK|AV 0.078 . TA13125 412 VGVGPSR|VR 0.074 . TA13125 414 VGPSRVR|DL 0.085 . TA13125 419 VRDLFEK|AR 0.061 . TA13125 421 DLFEKAR|KN 0.095 . TA13125 422 LFEKARK|NA 0.079 . TA13125 438 EIDAIGR|KR 0.083 . TA13125 439 IDAIGRK|RS 0.074 . TA13125 440 DAIGRKR|SK 0.295 . TA13125 442 IGRKRSK|SG 0.083 . TA13125 453 AGSNDER|EN 0.085 . TA13125 468 VEMDGFK|SS 0.080 . TA13125 481 VLAGTNR|AD 0.074 . TA13125 491 LDPALTR|PG 0.067 . TA13125 494 ALTRPGR|FD 0.245 . TA13125 497 RPGRFDR|TV 0.587 *ProP* TA13125 503 RTVNISR|PD 0.072 . TA13125 509 RPDLEER|YE 0.088 . TA13125 514 ERYEIFK|VH 0.054 . TA13125 518 IFKVHLK|PI 0.062 . TA13125 521 VHLKPIK|IN 0.064 . TA13125 532 SPVGSDK|TA 0.085 . TA13125 539 TAENVDK|NA 0.092 . TA13125 543 VDKNAEK|NK 0.060 . TA13125 545 KNAEKNK|VM 0.068 . TA13125 552 VMDEFAR|KL 0.096 . TA13125 553 MDEFARK|LA 0.073 . TA13125 579 AAIQAAR|RK 0.105 . TA13125 580 AIQAARR|KS 0.148 . TA13125 581 IQAARRK|SA 0.238 . TA13125 597 FDNAIER|VM 0.083 . TA13125 603 RVMAGMK|KS 0.077 . TA13125 604 VMAGMKK|SG 0.165 . TA13125 614 ILTPQQK|LA 0.061 . TA13125 639 NADPVLK|VS 0.053 . TA13125 645 KVSIIPR|SS 0.270 . TA13125 665 DSMLFTR|DA 0.106 . TA13125 671 RDALLDK|IA 0.062 . TA13125 679 AVILGGR|AA 0.103 . TA13125 688 EDIFIGK|IT 0.068 . TA13125 699 ATDDLSK|VT 0.056 . TA13125 702 DLSKVTK|MC 0.083 . TA13125 715 SQWGMNK|EI 0.069 . TA13125 724 GLVSFQR|DN 0.105 . TA13125 734 DDPYFYR|NY 0.097 . TA13125 749 LIDQQVR|TI 0.080 . TA13125 758 IEDQYLR|VK 0.061 . TA13125 760 DQYLRVK|KM 0.054 . TA13125 761 QYLRVKK|ML 0.262 . TA13125 766 KKMLLGK|AE 0.058 . TA13125 772 KAELVHK|LS 0.055 . TA13125 775 LVHKLSK|LL 0.073 . TA13125 780 SKLLYDK|ET 0.064 . TA13125 795 VQCVGER|EF 0.070 . TA13125 800 EREFPIK|DK 0.077 . TA13125 802 EFPIKDK|YK 0.069 . TA13125 804 PIKDKYK|PY 0.072 . TA13125 816 NCNDNVK|ND 0.063 . ____________________________^_________________

  • Fasta :-

    >TA13125 ATGGTTCACCCCTGCGCTTCACACTGCAATGTTTTAGTATACTCAATTTCCTCGAGATTT TTAAAGTGTTTTCCCCTGAGTTTGGTTAGATTTTCGAAAAATCATCCCGTCAACTTCTCA CCTAAACTCCATCGCCTTCTCTTTTGCAGAAATTGCCATACTCTTCTTAACCGAAAATTT ATTACTAATAATTCTTACACTATTAATAATTTTAATTTTACTAAAGGGGAGTTTTCAACT CAATCCAGTTCTAATACAAATAAAACAACTGATCCAAATAAACAATTGAATGATCAGAAT AAAGAATCAGATGATGGAAATAAGAATTTTAAAAATGAAGTAAAAGAGGAAGTAAAAAAT GAAGTAAAAGAAGATAGAAAAGATGAGAAGATAAAGGGAGAGAAAGTGTTTAATTTATCG GATTTTAAGAAAAGTTATGAAAAGGATAAAAACGATGAGGAGTTTAAAGAAGAACCAAAG TCGAGATTTTGGCGGTTTTTTGACCCATCGACTATGTTTGCGGTAGGTCTTGGGGCTATT ATGGTCTTGGAACTGATTGACACGGGTGTTTTAAAGAATGAAATTACGTTTCAGGAGTTC CTCTCAAAGTACTTTATTAAGGGATACGTTGACAGAATCCAAGTGGTTAATAAAGATTTC TGCCGATGTTACCTCTCTGATCTCTCACCAATTAAAACACCCAAGTTCGTCTCCTTCAGA CTCGGATCCATCGACGCATTTGAACAGAAAATCGATGACATACAAGGATCGATGGGACTT CATCCTCAGAATTACATACCAATTCATTATGTAAATGAGGTGAATTTCCTTGCAGAAGTG AAGAAGATAACGCCATTTGTTCTGGTAACACTATTATTAGCAATGGGAGTGAGGAAAATA AGCGTCAAAAGTTCCTCAGGGATGGATCGATTCCTTAAAATGGGAAAAGCATCACCACTA GAAGGAAGAGATGTTAAGGTAAATGTAAAGTTTGAAGATGTAGCTGGTATGCGTGAGGCG AAGTGTGAAATAACAGAGTTCGTTGATTTTTTACGCTCACCAAAGACATACGAATCTTAC GGAGCCAAGATTCCTAAAGGTGTTTTACTCTGTGGAGCACCAGGAACTGGTAAAACACTA TTGGCTAAAGCGGTTGCGGGTGAGGCGAATGTGCCATTTTATTCCATGAGTGGTAGTGAC TTCATAGAAGTGTTTGTGGGAGTTGGACCATCACGAGTGAGGGATTTATTTGAAAAGGCA AGAAAGAACGCACCGTCAATTGTGTTTATTGACGAAATTGATGCCATTGGTAGAAAAAGA TCAAAATCAGGTTTCAACGCAGGGTCCAACGATGAGAGGGAAAATACACTTAACCAATTA TTAGTGGAGATGGATGGGTTTAAGAGTAGTTCAGGTGTAATAGTTCTGGCCGGTACTAAT AGAGCGGATATTCTAGACCCTGCTCTTACAAGACCAGGTCGTTTTGACCGTACGGTTAAC ATTTCACGTCCAGACTTGGAAGAACGCTATGAGATTTTTAAAGTACACCTTAAACCTATT AAAATCAACACCAGTAGTCCTGTAGGCTCGGATAAAACTGCCGAAAATGTAGATAAAAAT GCGGAAAAGAATAAGGTAATGGATGAGTTTGCCAGGAAACTGGCAGCTTTAACACCGAAC TTTGTTGGCGCAGAAATAGCTAACGTATGTAATGAAGCAGCCATACAAGCGGCACGTCGT AAATCAGCTAACGGAGTGGAAATGGTTGATTTCGACAACGCTATAGAGCGAGTGATGGCG GGAATGAAAAAGTCAGGTGATATCCTAACGCCTCAACAGAAGTTAGCAGTGGCATACCAT GAAGTAGGACATGCACTGGTGGGTTGGTTCTTAGAAAACGCTGACCCAGTACTGAAGGTT TCAATAATACCAAGATCGTCAGGAGCACTTGGGTTCAATCAACAAATGCCTGATGACTCA ATGTTGTTTACAAGGGACGCGTTATTGGATAAAATAGCAGTAATATTAGGAGGGAGAGCC GCTGAAGATATATTTATAGGGAAAATCACAACTGGTGCCACAGACGACCTAAGTAAAGTG ACCAAGATGTGTTATGCGTTTGTTTCACAATGGGGAATGAATAAAGAAATTGGACTAGTG TCGTTTCAACGTGATAACACTGATGATCCTTATTTCTATCGTAACTATTCTGAAAACACA GCACAACTAATAGATCAACAAGTTAGGACTATTATTGAGGATCAATATTTGCGGGTTAAG AAAATGTTACTGGGCAAAGCAGAATTAGTACACAAATTATCCAAACTGCTGTATGATAAG GAAACCATAACATATCAAGATATTGTACAATGTGTAGGTGAAAGAGAGTTTCCAATTAAA GATAAATATAAACCTTATATAGAAGTCAATTGTAATGATAATGTAAAAAATGATTAA
  • Download Fasta

  • Fasta :-

    MVHPCASHCNVLVYSISSRFLKCFPLSLVRFSKNHPVNFSPKLHRLLFCRNCHTLLNRKF ITNNSYTINNFNFTKGEFSTQSSSNTNKTTDPNKQLNDQNKESDDGNKNFKNEVKEEVKN EVKEDRKDEKIKGEKVFNLSDFKKSYEKDKNDEEFKEEPKSRFWRFFDPSTMFAVGLGAI MVLELIDTGVLKNEITFQEFLSKYFIKGYVDRIQVVNKDFCRCYLSDLSPIKTPKFVSFR LGSIDAFEQKIDDIQGSMGLHPQNYIPIHYVNEVNFLAEVKKITPFVLVTLLLAMGVRKI SVKSSSGMDRFLKMGKASPLEGRDVKVNVKFEDVAGMREAKCEITEFVDFLRSPKTYESY GAKIPKGVLLCGAPGTGKTLLAKAVAGEANVPFYSMSGSDFIEVFVGVGPSRVRDLFEKA RKNAPSIVFIDEIDAIGRKRSKSGFNAGSNDERENTLNQLLVEMDGFKSSSGVIVLAGTN RADILDPALTRPGRFDRTVNISRPDLEERYEIFKVHLKPIKINTSSPVGSDKTAENVDKN AEKNKVMDEFARKLAALTPNFVGAEIANVCNEAAIQAARRKSANGVEMVDFDNAIERVMA GMKKSGDILTPQQKLAVAYHEVGHALVGWFLENADPVLKVSIIPRSSGALGFNQQMPDDS MLFTRDALLDKIAVILGGRAAEDIFIGKITTGATDDLSKVTKMCYAFVSQWGMNKEIGLV SFQRDNTDDPYFYRNYSENTAQLIDQQVRTIIEDQYLRVKKMLLGKAELVHKLSKLLYDK ETITYQDIVQCVGEREFPIKDKYKPYIEVNCNDNVKND

  • title: ATP binding site
  • coordinates: A373,P374,G375,T376,G377,K378,T379,L380,D431,N480
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TA13125306 SVKSSSGMDR0.995unspTA13125306 SVKSSSGMDR0.995unspTA13125306 SVKSSSGMDR0.995unspTA13125318 SMGKASPLEG0.995unspTA13125443 SKRSKSGFNA0.996unspTA13125502 STVNISRPDL0.992unspTA13125145 SDFKKSYEKD0.995unspTA13125301 SVRKISVKSS0.997unsp

TA13125      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India