TA18250 | hypothetical protein

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  • Fasta :-

    >TA18250 MAEDKPLSEVYKNVVYSVSDLYSYTDLQKLLDSNTRAAFKEIGLKIDNNVIYFRLAFYLL LNAVGAYTTFFVHVEKSKFLLKVMLIVFFSLFSVYIAYDKVLLCRAHFVVKLKYGQELRG WKELLKLVRYKRKGRKNRTETYTLPLGDLFFSDGECDYDHFVKLMEKLKPTLLSLDRKTK KQD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA18250.fa Sequence name : TA18250 Sequence length : 183 VALUES OF COMPUTED PARAMETERS Coef20 : 3.358 CoefTot : 0.141 ChDiff : 10 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.882 2.371 0.258 0.773 MesoH : 0.022 1.082 -0.228 0.395 MuHd_075 : 23.814 11.984 5.852 4.039 MuHd_095 : 25.394 23.040 8.905 6.825 MuHd_100 : 21.086 20.080 7.759 5.682 MuHd_105 : 20.614 18.017 6.874 4.652 Hmax_075 : 2.567 10.500 -1.339 2.987 Hmax_095 : 4.300 15.800 0.679 5.020 Hmax_100 : 2.800 10.800 -0.022 3.740 Hmax_105 : 4.113 11.112 0.100 3.693 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9111 0.0889 DFMC : 0.9356 0.0644
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 183 TA18250 MAEDKPLSEVYKNVVYSVSDLYSYTDLQKLLDSNTRAAFKEIGLKIDNNVIYFRLAFYLLLNAVGAYTTFFVHVEKSKFL 80 LKVMLIVFFSLFSVYIAYDKVLLCRAHFVVKLKYGQELRGWKELLKLVRYKRKGRKNRTETYTLPLGDLFFSDGECDYDH 160 FVKLMEKLKPTLLSLDRKTKKQD 240 ................................................................................ 80 ................................................................................ 160 ....................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA18250 5 --MAEDK|PL 0.073 . TA18250 12 PLSEVYK|NV 0.089 . TA18250 29 SYTDLQK|LL 0.058 . TA18250 36 LLDSNTR|AA 0.106 . TA18250 40 NTRAAFK|EI 0.074 . TA18250 45 FKEIGLK|ID 0.056 . TA18250 54 NNVIYFR|LA 0.092 . TA18250 76 FFVHVEK|SK 0.072 . TA18250 78 VHVEKSK|FL 0.072 . TA18250 82 KSKFLLK|VM 0.061 . TA18250 100 VYIAYDK|VL 0.051 . TA18250 105 DKVLLCR|AH 0.079 . TA18250 111 RAHFVVK|LK 0.071 . TA18250 113 HFVVKLK|YG 0.068 . TA18250 119 KYGQELR|GW 0.090 . TA18250 122 QELRGWK|EL 0.089 . TA18250 126 GWKELLK|LV 0.068 . TA18250 129 ELLKLVR|YK 0.100 . TA18250 131 LKLVRYK|RK 0.077 . TA18250 132 KLVRYKR|KG 0.493 . TA18250 133 LVRYKRK|GR 0.088 . TA18250 135 RYKRKGR|KN 0.297 . TA18250 136 YKRKGRK|NR 0.073 . TA18250 138 RKGRKNR|TE 0.318 . TA18250 163 DYDHFVK|LM 0.065 . TA18250 167 FVKLMEK|LK 0.053 . TA18250 169 KLMEKLK|PT 0.065 . TA18250 177 TLLSLDR|KT 0.078 . TA18250 178 LLSLDRK|TK 0.087 . TA18250 180 SLDRKTK|KQ 0.134 . TA18250 181 LDRKTKK|QD 0.113 . ____________________________^_________________

  • Fasta :-

    >TA18250 ATGGCAGAGGATAAGCCCCTCAGCGAAGTGTATAAAAATGTAGTTTATTCTGTGTCGGAT TTATACTCTTACACCGATCTCCAAAAGTTACTCGACTCAAATACGAGAGCAGCTTTTAAA GAAATCGGTCTTAAAATCGATAATAATGTCATCTACTTCAGACTTGCTTTCTATTTACTT CTGAACGCAGTCGGAGCCTACACCACCTTCTTCGTTCACGTAGAAAAGTCAAAATTTTTG TTAAAGGTTATGTTGATTGTTTTTTTCTCTTTATTTTCCGTCTATATCGCCTACGATAAG GTTCTCCTATGCAGAGCACATTTTGTCGTAAAACTCAAATATGGGCAAGAGTTAAGAGGT TGGAAGGAACTTTTGAAATTAGTACGTTATAAAAGAAAGGGTCGAAAAAATAGGACTGAA ACATACACATTACCCCTAGGTGATTTGTTTTTCTCAGACGGAGAGTGCGATTATGACCAT TTTGTAAAATTAATGGAGAAGCTCAAACCGACGCTTCTTAGTCTTGACAGAAAAACTAAA AAACAAGACTAA
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  • Fasta :-

    No Results
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IDSitePeptideScoreMethod
TA1825017 SNVVYSVSDL0.993unsp

TA18250      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India