TA20680 | integral membrane protein, rhomboid family

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TA20680OTHER0.8225420.0000720.177386
No Results

  • Fasta :-

    >TA20680 MSYVRITNFSSFRNLKQNLTHYGDIFHKLYPQINPKYTNYYTKPPLNTLNYFKTRIVSNG FQQNKENPNYKKHKRNFRYLAFISTASCALYKNKDDNKPSDNLDTNEEDSNKETNEREPL LLSVEQKDSDSTNFDPFEDEDVVYFSKDYTYESPSKDNKYYVHIEKFRYPNPKGTKIPKS FEPDIESFFVNPFPGYFKRVKDQIDTIFDSFFDNSSANFPNLSSFNPNRNVNSNGNGVHM DPFWVVLSNTSPTTFSKAFMIVCGVVFGLWKLSENTVNTKFSDFMNKHFLTSYEAFKSKR YHTLLTSAISHSSLMHFGFNCMLFHQLMKTFNNHMALYSTQHVNNSLQTFVRSIFSSNSS INVGNVVKKQGRITTNDIFNVMFLSSLTSSLGHVYLYKTPVLGASGAISGLVYLLASTFP NSFFRTVFPLPGLNLSILQIGQLFVATNIYFLMNGRSPNIAWAAHLIGMGTGALYCLFQQ YVNKRPGFYNPISLSFKTAKSQWLRTFQGIN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA20680.fa Sequence name : TA20680 Sequence length : 511 VALUES OF COMPUTED PARAMETERS Coef20 : 4.632 CoefTot : -5.504 ChDiff : 16 ZoneTo : 94 KR : 16 DE : 2 CleavSite : 88 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.688 1.682 0.320 0.666 MesoH : 0.951 0.973 -0.009 0.460 MuHd_075 : 27.401 22.508 8.220 6.668 MuHd_095 : 40.757 25.451 10.918 9.051 MuHd_100 : 46.321 30.604 13.209 10.754 MuHd_105 : 39.433 31.709 13.021 9.866 Hmax_075 : 4.083 13.650 0.530 4.010 Hmax_095 : 9.537 14.800 -0.315 4.000 Hmax_100 : 16.100 15.300 2.497 6.440 Hmax_105 : 11.725 14.612 2.821 5.758 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0639 0.9361 DFMC : 0.0898 0.9102 This protein is probably imported in mitochondria. f(Ser) = 0.0638 f(Arg) = 0.0532 CMi = 0.44183 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 511 TA20680 MSYVRITNFSSFRNLKQNLTHYGDIFHKLYPQINPKYTNYYTKPPLNTLNYFKTRIVSNGFQQNKENPNYKKHKRNFRYL 80 AFISTASCALYKNKDDNKPSDNLDTNEEDSNKETNEREPLLLSVEQKDSDSTNFDPFEDEDVVYFSKDYTYESPSKDNKY 160 YVHIEKFRYPNPKGTKIPKSFEPDIESFFVNPFPGYFKRVKDQIDTIFDSFFDNSSANFPNLSSFNPNRNVNSNGNGVHM 240 DPFWVVLSNTSPTTFSKAFMIVCGVVFGLWKLSENTVNTKFSDFMNKHFLTSYEAFKSKRYHTLLTSAISHSSLMHFGFN 320 CMLFHQLMKTFNNHMALYSTQHVNNSLQTFVRSIFSSNSSINVGNVVKKQGRITTNDIFNVMFLSSLTSSLGHVYLYKTP 400 VLGASGAISGLVYLLASTFPNSFFRTVFPLPGLNLSILQIGQLFVATNIYFLMNGRSPNIAWAAHLIGMGTGALYCLFQQ 480 YVNKRPGFYNPISLSFKTAKSQWLRTFQGIN 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA20680 5 --MSYVR|IT 0.069 . TA20680 13 TNFSSFR|NL 0.117 . TA20680 16 SSFRNLK|QN 0.120 . TA20680 28 YGDIFHK|LY 0.061 . TA20680 36 YPQINPK|YT 0.070 . TA20680 43 YTNYYTK|PP 0.067 . TA20680 53 NTLNYFK|TR 0.056 . TA20680 55 LNYFKTR|IV 0.239 . TA20680 65 NGFQQNK|EN 0.060 . TA20680 71 KENPNYK|KH 0.066 . TA20680 72 ENPNYKK|HK 0.087 . TA20680 74 PNYKKHK|RN 0.079 . TA20680 75 NYKKHKR|NF 0.171 . TA20680 78 KHKRNFR|YL 0.264 . TA20680 92 ASCALYK|NK 0.067 . TA20680 94 CALYKNK|DD 0.067 . TA20680 98 KNKDDNK|PS 0.063 . TA20680 112 NEEDSNK|ET 0.064 . TA20680 117 NKETNER|EP 0.061 . TA20680 127 LLSVEQK|DS 0.097 . TA20680 147 DVVYFSK|DY 0.067 . TA20680 156 TYESPSK|DN 0.069 . TA20680 159 SPSKDNK|YY 0.090 . TA20680 166 YYVHIEK|FR 0.064 . TA20680 168 VHIEKFR|YP 0.100 . TA20680 173 FRYPNPK|GT 0.075 . TA20680 176 PNPKGTK|IP 0.058 . TA20680 179 KGTKIPK|SF 0.098 . TA20680 198 PFPGYFK|RV 0.075 . TA20680 199 FPGYFKR|VK 0.336 . TA20680 201 GYFKRVK|DQ 0.075 . TA20680 229 SSFNPNR|NV 0.161 . TA20680 257 SPTTFSK|AF 0.069 . TA20680 271 VVFGLWK|LS 0.059 . TA20680 280 ENTVNTK|FS 0.068 . TA20680 287 FSDFMNK|HF 0.064 . TA20680 297 TSYEAFK|SK 0.077 . TA20680 299 YEAFKSK|RY 0.075 . TA20680 300 EAFKSKR|YH 0.165 . TA20680 329 LFHQLMK|TF 0.061 . TA20680 352 SLQTFVR|SI 0.186 . TA20680 368 NVGNVVK|KQ 0.065 . TA20680 369 VGNVVKK|QG 0.111 . TA20680 372 VVKKQGR|IT 0.090 . TA20680 398 GHVYLYK|TP 0.057 . TA20680 425 FPNSFFR|TV 0.159 . TA20680 456 YFLMNGR|SP 0.088 . TA20680 484 FQQYVNK|RP 0.066 . TA20680 485 QQYVNKR|PG 0.146 . TA20680 497 PISLSFK|TA 0.074 . TA20680 500 LSFKTAK|SQ 0.087 . TA20680 505 AKSQWLR|TF 0.099 . ____________________________^_________________

  • Fasta :-

    >TA20680 ATGTCGTATGTTAGAATAACAAACTTCAGCTCATTTAGAAATTTAAAACAGAATCTTACT CATTATGGTGACATATTCCATAAACTTTACCCTCAAATCAACCCTAAATACACAAATTAT TATACAAAACCACCTTTAAATACACTAAACTATTTTAAAACGAGAATTGTGTCGAATGGA TTTCAACAGAATAAAGAGAACCCGAATTATAAAAAACATAAAAGGAATTTTAGATATTTA GCGTTCATTAGCACAGCAAGCTGTGCTTTATATAAGAATAAAGATGATAATAAACCATCA GATAATTTAGATACTAATGAAGAAGATTCTAATAAAGAAACTAATGAAAGAGAACCATTA TTATTATCTGTAGAACAAAAGGATTCAGATTCTACAAATTTCGACCCTTTTGAAGATGAA GATGTGGTATACTTTTCGAAAGATTATACCTACGAGTCACCGTCAAAAGATAATAAATAT TATGTACACATTGAGAAGTTTAGATATCCAAATCCCAAAGGAACTAAAATCCCAAAGTCT TTTGAACCAGATATTGAGTCGTTCTTTGTGAACCCATTTCCCGGCTATTTCAAAAGAGTA AAGGATCAAATCGACACTATATTCGACAGTTTTTTTGATAATTCAAGTGCAAACTTTCCG AATTTATCATCATTTAATCCGAATAGGAATGTTAATAGTAATGGAAATGGAGTACATATG GACCCATTTTGGGTAGTGTTGAGTAACACATCACCAACTACTTTTAGTAAAGCATTTATG ATAGTTTGTGGAGTAGTTTTTGGGCTTTGGAAATTATCAGAAAATACAGTCAATACTAAA TTTTCAGATTTCATGAACAAACACTTTTTAACATCATATGAAGCATTTAAGTCTAAAAGA TATCATACATTATTAACTTCAGCTATAAGTCATTCATCTCTGATGCATTTTGGATTCAAT TGTATGTTATTTCATCAACTGATGAAGACTTTCAATAATCATATGGCACTTTATAGTACA CAGCATGTAAACAACAGTTTACAAACATTTGTAAGAAGTATATTCTCATCAAATTCTTCA ATCAATGTTGGAAATGTAGTGAAGAAGCAAGGTAGAATAACAACAAATGACATTTTCAAT GTAATGTTTTTATCATCGTTGACATCAAGTTTGGGTCATGTGTATTTATATAAAACTCCA GTTCTAGGAGCATCGGGAGCTATTTCAGGACTCGTGTACCTCTTGGCATCCACGTTTCCA AACAGCTTTTTCAGGACTGTATTTCCACTTCCAGGCCTCAATTTAAGCATTTTACAAATC GGCCAATTATTTGTGGCTACCAATATATACTTCCTAATGAATGGAAGAAGCCCAAACATC GCATGGGCCGCACATCTCATCGGAATGGGTACGGGAGCACTTTACTGTTTATTCCAGCAA TATGTAAATAAAAGGCCTGGCTTCTATAACCCAATCTCACTTTCATTTAAAACAGCTAAA AGCCAGTGGCTGAGAACATTCCAAGGTATCAACTAA
  • Download Fasta

  • Fasta :-

    MSYVRITNFSSFRNLKQNLTHYGDIFHKLYPQINPKYTNYYTKPPLNTLNYFKTRIVSNG FQQNKENPNYKKHKRNFRYLAFISTASCALYKNKDDNKPSDNLDTNEEDSNKETNEREPL LLSVEQKDSDSTNFDPFEDEDVVYFSKDYTYESPSKDNKYYVHIEKFRYPNPKGTKIPKS FEPDIESFFVNPFPGYFKRVKDQIDTIFDSFFDNSSANFPNLSSFNPNRNVNSNGNGVHM DPFWVVLSNTSPTTFSKAFMIVCGVVFGLWKLSENTVNTKFSDFMNKHFLTSYEAFKSKR YHTLLTSAISHSSLMHFGFNCMLFHQLMKTFNNHMALYSTQHVNNSLQTFVRSIFSSNSS INVGNVVKKQGRITTNDIFNVMFLSSLTSSLGHVYLYKTPVLGASGAISGLVYLLASTFP NSFFRTVFPLPGLNLSILQIGQLFVATNIYFLMNGRSPNIAWAAHLIGMGTGALYCLFQQ YVNKRPGFYNPISLSFKTAKSQWLRTFQGIN

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
TA20680110 SNEEDSNKET0.997unspTA20680180 SKIPKSFEPD0.992unsp

TA20680      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India