TA20685 | hypothetical protein

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  • Fasta :-

    >TA20685 MKMILKSAYRNLPSLFRNSNFVLLQQAKYHAKSKYEGKGFRKLLGPFWPMTTPAFLQSYA IITGFFLLLYYPLDSCFFNVRKLKAEMDAKVRG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA20685.fa Sequence name : TA20685 Sequence length : 93 VALUES OF COMPUTED PARAMETERS Coef20 : 4.421 CoefTot : -2.203 ChDiff : 11 ZoneTo : 73 KR : 10 DE : 1 CleavSite : 20 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.735 1.659 0.233 0.704 MesoH : -0.390 0.151 -0.413 0.204 MuHd_075 : 29.181 16.884 7.208 6.933 MuHd_095 : 51.461 32.953 13.935 12.312 MuHd_100 : 44.768 29.091 11.329 11.194 MuHd_105 : 39.641 28.094 9.986 10.290 Hmax_075 : 6.400 17.800 -0.938 3.740 Hmax_095 : 20.200 22.400 3.670 7.160 Hmax_100 : 20.200 22.400 3.670 7.160 Hmax_105 : 3.900 10.400 -1.083 3.560 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0191 0.9809 DFMC : 0.0260 0.9740 This protein is probably imported in mitochondria. f(Ser) = 0.0685 f(Arg) = 0.0411 CMi = 0.53706 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 93 TA20685 MKMILKSAYRNLPSLFRNSNFVLLQQAKYHAKSKYEGKGFRKLLGPFWPMTTPAFLQSYAIITGFFLLLYYPLDSCFFNV 80 RKLKAEMDAKVRG 160 ................................................................................ 80 ............. 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA20685 2 -----MK|MI 0.065 . TA20685 6 -MKMILK|SA 0.089 . TA20685 10 ILKSAYR|NL 0.076 . TA20685 17 NLPSLFR|NS 0.077 . TA20685 28 VLLQQAK|YH 0.064 . TA20685 32 QAKYHAK|SK 0.098 . TA20685 34 KYHAKSK|YE 0.101 . TA20685 38 KSKYEGK|GF 0.078 . TA20685 41 YEGKGFR|KL 0.076 . TA20685 42 EGKGFRK|LL 0.097 . TA20685 81 SCFFNVR|KL 0.090 . TA20685 82 CFFNVRK|LK 0.067 . TA20685 84 FNVRKLK|AE 0.136 . TA20685 90 KAEMDAK|VR 0.065 . TA20685 92 EMDAKVR|G- 0.088 . ____________________________^_________________

  • Fasta :-

    >TA20685 ATGAAAATGATTTTAAAATCAGCTTACAGAAATTTACCAAGCTTGTTCAGAAATAGTAAT TTTGTACTATTACAACAAGCAAAATACCACGCAAAGAGTAAATATGAAGGGAAAGGATTT AGAAAATTACTCGGACCATTTTGGCCAATGACAACACCTGCATTCCTACAGTCATATGCA ATTATCACAGGCTTCTTTTTACTATTGTACTATCCCCTGGATTCGTGTTTTTTTAATGTA AGGAAACTGAAGGCTGAAATGGACGCGAAGGTTAGGGGTTGA
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  • Fasta :-

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IDSitePeptideScoreMethod
TA2068533 SYHAKSKYEG0.998unsp

TA20685      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India