TA20965 | rhomboid family integral membrane protein, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TA20965OTHER0.9999800.0000040.000016
No Results

  • Fasta :-

    >TA20965 MEDESYASTSVIDMSNVDYIENMFEKLVSRQNRFTKEFENNIEICCTQLNKLKDISNSDT INLLSSLYNSKLTVERLKLLQNDYEPCSVCKTVEHAPLIYKEDLKEKIRKRSTDQSDDYF QFMTRTKSFKNTRFFFDFKGEDQSNDPDKIKKEASNSFHEHKFSDYFVFLINERPSTDTI FFKKFTFNSLKSLGSRALELIMSFFPIFNITNFSNLIIVIQWFLYILRVLVLRNIFKDKD IESESKQFGAFSGQLLRDNLEIHRILTSTFFHNSFAHLVISTMMHLRFSSVFEMLNGILA TIFVYLSSSAYGMIGVCWLTPDTLQASGFAGDWGVAGALLSRFFMFPFLVHREYQNITNI VVSYICLFFLKTIGKGSSILVLAHLLSAISGLCMGTMINMRSKTNKISGIKRLLTDFVCS CTLLVVPIFSIFMLFTVK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA20965.fa Sequence name : TA20965 Sequence length : 438 VALUES OF COMPUTED PARAMETERS Coef20 : 3.599 CoefTot : 0.000 ChDiff : 4 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.453 2.482 0.577 0.810 MesoH : 0.934 1.189 0.007 0.470 MuHd_075 : 28.862 11.741 5.872 3.738 MuHd_095 : 11.685 4.892 2.540 0.877 MuHd_100 : 13.124 7.643 2.845 1.499 MuHd_105 : 15.301 12.024 3.445 2.620 Hmax_075 : 11.433 7.263 0.133 3.150 Hmax_095 : -2.187 2.000 -2.436 1.260 Hmax_100 : 4.700 4.700 -0.971 1.860 Hmax_105 : 1.300 7.000 -1.775 2.460 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9832 0.0168 DFMC : 0.9610 0.0390
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 438 TA20965 MEDESYASTSVIDMSNVDYIENMFEKLVSRQNRFTKEFENNIEICCTQLNKLKDISNSDTINLLSSLYNSKLTVERLKLL 80 QNDYEPCSVCKTVEHAPLIYKEDLKEKIRKRSTDQSDDYFQFMTRTKSFKNTRFFFDFKGEDQSNDPDKIKKEASNSFHE 160 HKFSDYFVFLINERPSTDTIFFKKFTFNSLKSLGSRALELIMSFFPIFNITNFSNLIIVIQWFLYILRVLVLRNIFKDKD 240 IESESKQFGAFSGQLLRDNLEIHRILTSTFFHNSFAHLVISTMMHLRFSSVFEMLNGILATIFVYLSSSAYGMIGVCWLT 320 PDTLQASGFAGDWGVAGALLSRFFMFPFLVHREYQNITNIVVSYICLFFLKTIGKGSSILVLAHLLSAISGLCMGTMINM 400 RSKTNKISGIKRLLTDFVCSCTLLVVPIFSIFMLFTVK 480 ................................P............................................... 80 ..............................P................................................. 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ TA20965 26 IENMFEK|LV 0.095 . TA20965 30 FEKLVSR|QN 0.075 . TA20965 33 LVSRQNR|FT 0.544 *ProP* TA20965 36 RQNRFTK|EF 0.186 . TA20965 51 CCTQLNK|LK 0.057 . TA20965 53 TQLNKLK|DI 0.084 . TA20965 71 SSLYNSK|LT 0.059 . TA20965 76 SKLTVER|LK 0.072 . TA20965 78 LTVERLK|LL 0.057 . TA20965 91 EPCSVCK|TV 0.089 . TA20965 101 HAPLIYK|ED 0.053 . TA20965 105 IYKEDLK|EK 0.059 . TA20965 107 KEDLKEK|IR 0.062 . TA20965 109 DLKEKIR|KR 0.081 . TA20965 110 LKEKIRK|RS 0.090 . TA20965 111 KEKIRKR|ST 0.538 *ProP* TA20965 125 YFQFMTR|TK 0.081 . TA20965 127 QFMTRTK|SF 0.075 . TA20965 130 TRTKSFK|NT 0.074 . TA20965 133 KSFKNTR|FF 0.109 . TA20965 139 RFFFDFK|GE 0.066 . TA20965 149 QSNDPDK|IK 0.081 . TA20965 151 NDPDKIK|KE 0.059 . TA20965 152 DPDKIKK|EA 0.156 . TA20965 162 NSFHEHK|FS 0.076 . TA20965 174 VFLINER|PS 0.069 . TA20965 183 TDTIFFK|KF 0.060 . TA20965 184 DTIFFKK|FT 0.144 . TA20965 191 FTFNSLK|SL 0.076 . TA20965 196 LKSLGSR|AL 0.114 . TA20965 228 WFLYILR|VL 0.058 . TA20965 233 LRVLVLR|NI 0.096 . TA20965 237 VLRNIFK|DK 0.075 . TA20965 239 RNIFKDK|DI 0.101 . TA20965 246 DIESESK|QF 0.067 . TA20965 257 FSGQLLR|DN 0.088 . TA20965 264 DNLEIHR|IL 0.072 . TA20965 287 STMMHLR|FS 0.125 . TA20965 342 AGALLSR|FF 0.073 . TA20965 352 FPFLVHR|EY 0.087 . TA20965 371 ICLFFLK|TI 0.070 . TA20965 375 FLKTIGK|GS 0.066 . TA20965 401 GTMINMR|SK 0.135 . TA20965 403 MINMRSK|TN 0.067 . TA20965 406 MRSKTNK|IS 0.126 . TA20965 411 NKISGIK|RL 0.055 . TA20965 412 KISGIKR|LL 0.211 . TA20965 438 FMLFTVK|-- 0.058 . ____________________________^_________________

  • Fasta :-

    >TA20965 ATGGAAGATGAATCATACGCTTCAACTTCAGTAATTGACATGAGCAATGTCGATTATATC GAAAACATGTTTGAAAAACTTGTGAGTAGACAGAATAGGTTTACAAAGGAGTTTGAAAAC AATATCGAAATTTGCTGTACTCAGCTTAATAAGTTAAAGGATATAAGCAACAGTGATACA ATAAATCTCCTAAGCAGTCTTTACAACTCTAAATTAACTGTTGAAAGGCTAAAGTTACTC CAAAATGATTATGAACCGTGTTCAGTTTGTAAAACAGTTGAACACGCGCCTCTCATCTAT AAGGAAGACTTAAAAGAAAAGATAAGGAAGAGATCAACTGACCAGTCTGATGACTATTTT CAGTTCATGACCAGGACTAAAAGCTTTAAAAATACACGTTTCTTCTTTGATTTTAAGGGT GAGGACCAGTCAAACGACCCTGACAAAATCAAGAAGGAGGCCAGCAACTCATTTCACGAA CATAAATTTTCTGACTACTTTGTATTTTTAATTAACGAAAGACCTTCTACTGATACAATC TTTTTTAAGAAATTTACATTCAACTCACTTAAATCGTTGGGGTCCCGTGCTTTAGAGTTA ATTATGAGTTTCTTCCCTATTTTCAACATAACTAACTTTTCAAACCTTATTATCGTAATT CAATGGTTTCTATATATTCTTAGAGTCCTAGTACTCAGGAATATCTTTAAGGATAAAGAT ATTGAGAGTGAAAGTAAACAATTCGGAGCGTTTAGCGGCCAGTTGTTGAGGGACAATTTG GAGATTCACAGGATATTGACATCCACTTTTTTCCACAATTCTTTTGCTCACTTGGTTATT AGTACAATGATGCACTTGAGGTTCAGCTCAGTATTCGAGATGCTGAATGGAATTCTGGCA ACAATTTTCGTATATCTTTCAAGCTCGGCTTACGGAATGATTGGAGTCTGCTGGCTGACA CCTGACACTTTACAGGCAAGTGGTTTCGCGGGGGATTGGGGAGTTGCAGGGGCTCTACTC AGTAGATTCTTCATGTTCCCCTTTTTAGTTCATAGGGAATACCAAAATATAACAAACATA GTTGTTAGTTACATATGTCTCTTCTTTTTGAAAACAATTGGAAAAGGAAGCTCGATTCTA GTTTTGGCACACCTTCTAAGCGCAATTTCAGGACTCTGTATGGGTACAATGATCAATATG AGGTCAAAAACTAACAAAATTTCCGGAATAAAGAGACTATTAACTGACTTTGTGTGTTCG TGCACATTACTGGTTGTTCCCATATTCTCAATATTCATGCTATTCACGGTTAAATGA
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  • Fasta :-

    MEDESYASTSVIDMSNVDYIENMFEKLVSRQNRFTKEFENNIEICCTQLNKLKDISNSDT INLLSSLYNSKLTVERLKLLQNDYEPCSVCKTVEHAPLIYKEDLKEKIRKRSTDQSDDYF QFMTRTKSFKNTRFFFDFKGEDQSNDPDKIKKEASNSFHEHKFSDYFVFLINERPSTDTI FFKKFTFNSLKSLGSRALELIMSFFPIFNITNFSNLIIVIQWFLYILRVLVLRNIFKDKD IESESKQFGAFSGQLLRDNLEIHRILTSTFFHNSFAHLVISTMMHLRFSSVFEMLNGILA TIFVYLSSSAYGMIGVCWLTPDTLQASGFAGDWGVAGALLSRFFMFPFLVHREYQNITNI VVSYICLFFLKTIGKGSSILVLAHLLSAISGLCMGTMINMRSKTNKISGIKRLLTDFVCS CTLLVVPIFSIFMLFTVK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TA20965112 SIRKRSTDQS0.995unspTA20965112 SIRKRSTDQS0.995unspTA20965112 SIRKRSTDQS0.995unspTA20965128 STRTKSFKNT0.997unspTA20965157 SEASNSFHEH0.991unspTA20965176 SNERPSTDTI0.992unspTA2096510 SYASTSVIDM0.995unspTA2096556 SLKDISNSDT0.994unsp

TA20965      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India