TGME49_205600 | zinc finger, C3HC4 type (RING finger) domain-containing protein

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_IDPredictionOTHERSPmTPCS_Position
TGME49_205600OTHER0.9999990.0000010.000000
No Results

  • Fasta :-

    >TGME49_205600 MERSFPQLSPSIPPHESGESSAVHYSSVSPRDTSTFCHESHAENAQSASTPADLSVAKSA TVPASRCGEQTVPSLTISPQSEKGGCSPSDSPAGEETRGRSSPRASSSGERENSLSVPAS EYETGRASPAELASEVLRGETKKSGEGDERREEGERQGDERREEGEREGNERREEGAREG DERREEGERQGDERRGVEGPKRERDSRECDERRKDEEGSTGERRAEETGEEESKEEASER ERSVELSERNVKERERGGATAASPLPSTVRDPGFQSEVRTESAFSRSSAYSIVYSGRTTR SERTEGEKRSRGGGASATTPSSSSAARSRGEENTRFECNICFDEATDPVVTRCGHLFCWT CLHAWLRRGTYECPVCKAHTTVRNVIPIYGRGAEKHPRDASETGNSGAGSVPERPRAERP EPEPQSRSGASFGGGTGGATFSFGLFPFFGLGVTWGGGVLNSGFSSSASSAFDWLFFPPG AHQRDRGAPRQDQVLTEEQQRMQSLGFLLLAFCFVLYIIFLA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_205600.fa Sequence name : TGME49_205600 Sequence length : 522 VALUES OF COMPUTED PARAMETERS Coef20 : 2.988 CoefTot : -1.046 ChDiff : -19 ZoneTo : 15 KR : 1 DE : 1 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.606 2.929 0.586 0.997 MesoH : 0.200 0.278 -0.228 0.289 MuHd_075 : 22.057 5.691 5.493 2.873 MuHd_095 : 20.294 19.369 5.070 5.471 MuHd_100 : 21.268 19.292 4.383 5.805 MuHd_105 : 26.554 18.255 5.226 6.197 Hmax_075 : 6.417 0.200 -0.416 2.100 Hmax_095 : 6.000 7.900 -0.523 3.240 Hmax_100 : 11.200 8.200 -0.270 3.580 Hmax_105 : 4.100 5.500 -1.584 3.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9970 0.0030 DFMC : 0.9980 0.0020
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 522 TGME49_205600 MERSFPQLSPSIPPHESGESSAVHYSSVSPRDTSTFCHESHAENAQSASTPADLSVAKSATVPASRCGEQTVPSLTISPQ 80 SEKGGCSPSDSPAGEETRGRSSPRASSSGERENSLSVPASEYETGRASPAELASEVLRGETKKSGEGDERREEGERQGDE 160 RREEGEREGNERREEGAREGDERREEGERQGDERRGVEGPKRERDSRECDERRKDEEGSTGERRAEETGEEESKEEASER 240 ERSVELSERNVKERERGGATAASPLPSTVRDPGFQSEVRTESAFSRSSAYSIVYSGRTTRSERTEGEKRSRGGGASATTP 320 SSSSAARSRGEENTRFECNICFDEATDPVVTRCGHLFCWTCLHAWLRRGTYECPVCKAHTTVRNVIPIYGRGAEKHPRDA 400 SETGNSGAGSVPERPRAERPEPEPQSRSGASFGGGTGGATFSFGLFPFFGLGVTWGGGVLNSGFSSSASSAFDWLFFPPG 480 AHQRDRGAPRQDQVLTEEQQRMQSLGFLLLAFCFVLYIIFLA 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_205600 3 ----MER|SF 0.115 . TGME49_205600 31 YSSVSPR|DT 0.288 . TGME49_205600 58 ADLSVAK|SA 0.081 . TGME49_205600 66 ATVPASR|CG 0.090 . TGME49_205600 83 ISPQSEK|GG 0.057 . TGME49_205600 98 PAGEETR|GR 0.087 . TGME49_205600 100 GEETRGR|SS 0.113 . TGME49_205600 104 RGRSSPR|AS 0.186 . TGME49_205600 111 ASSSGER|EN 0.106 . TGME49_205600 126 SEYETGR|AS 0.108 . TGME49_205600 138 LASEVLR|GE 0.106 . TGME49_205600 142 VLRGETK|KS 0.070 . TGME49_205600 143 LRGETKK|SG 0.230 . TGME49_205600 150 SGEGDER|RE 0.082 . TGME49_205600 151 GEGDERR|EE 0.155 . TGME49_205600 156 RREEGER|QG 0.084 . TGME49_205600 161 ERQGDER|RE 0.102 . TGME49_205600 162 RQGDERR|EE 0.151 . TGME49_205600 167 RREEGER|EG 0.073 . TGME49_205600 172 EREGNER|RE 0.098 . TGME49_205600 173 REGNERR|EE 0.173 . TGME49_205600 178 RREEGAR|EG 0.091 . TGME49_205600 183 AREGDER|RE 0.097 . TGME49_205600 184 REGDERR|EE 0.146 . TGME49_205600 189 RREEGER|QG 0.088 . TGME49_205600 194 ERQGDER|RG 0.088 . TGME49_205600 195 RQGDERR|GV 0.241 . TGME49_205600 201 RGVEGPK|RE 0.061 . TGME49_205600 202 GVEGPKR|ER 0.155 . TGME49_205600 204 EGPKRER|DS 0.081 . TGME49_205600 207 KRERDSR|EC 0.323 . TGME49_205600 212 SRECDER|RK 0.114 . TGME49_205600 213 RECDERR|KD 0.142 . TGME49_205600 214 ECDERRK|DE 0.085 . TGME49_205600 223 EGSTGER|RA 0.092 . TGME49_205600 224 GSTGERR|AE 0.214 . TGME49_205600 234 TGEEESK|EE 0.059 . TGME49_205600 240 KEEASER|ER 0.101 . TGME49_205600 242 EASERER|SV 0.272 . TGME49_205600 249 SVELSER|NV 0.127 . TGME49_205600 252 LSERNVK|ER 0.137 . TGME49_205600 254 ERNVKER|ER 0.164 . TGME49_205600 256 NVKERER|GG 0.078 . TGME49_205600 270 PLPSTVR|DP 0.090 . TGME49_205600 279 GFQSEVR|TE 0.079 . TGME49_205600 286 TESAFSR|SS 0.189 . TGME49_205600 297 SIVYSGR|TT 0.105 . TGME49_205600 300 YSGRTTR|SE 0.440 . TGME49_205600 303 RTTRSER|TE 0.256 . TGME49_205600 308 ERTEGEK|RS 0.062 . TGME49_205600 309 RTEGEKR|SR 0.316 . TGME49_205600 311 EGEKRSR|GG 0.115 . TGME49_205600 327 SSSSAAR|SR 0.265 . TGME49_205600 329 SSAARSR|GE 0.122 . TGME49_205600 335 RGEENTR|FE 0.088 . TGME49_205600 352 TDPVVTR|CG 0.089 . TGME49_205600 367 CLHAWLR|RG 0.074 . TGME49_205600 368 LHAWLRR|GT 0.162 . TGME49_205600 377 YECPVCK|AH 0.068 . TGME49_205600 383 KAHTTVR|NV 0.149 . TGME49_205600 391 VIPIYGR|GA 0.115 . TGME49_205600 395 YGRGAEK|HP 0.064 . TGME49_205600 398 GAEKHPR|DA 0.212 . TGME49_205600 414 AGSVPER|PR 0.084 . TGME49_205600 416 SVPERPR|AE 0.086 . TGME49_205600 419 ERPRAER|PE 0.161 . TGME49_205600 427 EPEPQSR|SG 0.124 . TGME49_205600 484 PPGAHQR|DR 0.146 . TGME49_205600 486 GAHQRDR|GA 0.149 . TGME49_205600 490 RDRGAPR|QD 0.092 . TGME49_205600 501 LTEEQQR|MQ 0.088 . ____________________________^_________________

  • Fasta :-

    >TGME49_205600 CAGAAGACTTTTTAACAGCTCGCAAATCCTCAGCGGCGGTCCTGCCTTCTCCACTGTTCC GACTGGACTGGTTTCGGACGAAACGCGTTCGTCGACTGGGCGCCTCCGGTCTTGGAGTTC CTCGTGGTAACGCAACAGCCGGATGGCGAAAAACGAGCATTTGTGTGTGTTTACCAGCGC CGCAGGAGAGAAACAGATGAGGGAATTGTTTGACGGAAACACCAGAGCAAACAACTTTTC GTATGGGAGGAGCAAGTTCCACCGTGCTGTACGTCTCTCTCTAGTGCTCTGGGCGCCTTC CGTCACAAAGGCATGCCTCGAGCTGTCTGCCGGTGTGGTCGGCCTAGCCGTTCGAGCCGA CGAGGTTTTTTCGCTTGATTCTTCGTTTCTTTCGTCTCGTCCTGCTTTCTTTTTTTGATT TTCACTTGTCTGGACTCGAGGCAGGTCTTCAGACAGAGATCTCCGATTCTCCACCGGTTA AGTTCCAGACGCTCAGGTGTGCTGGCCGACGCGTGCAGTGTTGCCGGTCAATTCCCATCC CCAATCTGAGGTGTATGTACACCGCAGATTTCGCGCCTCTCTGGTCATCAGAACGGAAAG ACCAACTATCTGCGTATAAAAGTGATACTGCGTGGCGTCGCTCTGATCTCTCGATACTCC ATTTTTCTTTGTCCAGTTTCAGATGGTCTCTCTGTTCTCCTGTGCCCTTTCCACGAAGTC CTCTCTTGGGGGTCAGCAAGAGCAACGGGTCGCGCCTTTGACGCGTTCGATTCCGTGAGG AATCTCGCCGTTATTGACTCTCCTCTTTGCCGAGTGTCGTCTTCCGCCTCGTGCTTCTGA ACGTCACGCTCTTCGCGACCAATCTCCGGTGCCCAAAAGTCCACTGGCTGTCAGTCTCTG CCCCAGTTCCCTTTGTTCCGCCTCGTCTCCCGGTTCTCTCAGATCCCTTCGTCCCCGATC GGTCGTCGACCTCGGAATTTCGCTCGATCAACGGCGGTCGTATACGTCTGTGTTGTGAAG AAGAAGACGCATGTCGCTTTCGCAAAACAGAGAAGAGCGGGCGCGACGGAAACGTAACCA AGGAGGAGGCCGCCGGACGCTGTCTGTACACCCGACCGCGCGGCCGGTTACCTCTCGACG CGAAGACGACTGTGCTTGTTTGCTGGACAGTTCTCATTCAGTGTGTGCTCTCGCGCATCT CCGGCTTCGACAACGTCAGCTGCTTTGGTAGAGAGAATTGTTTTCGCGGTTGTTTCCTCT CCTCTCGTCTCGGATTTCTTTCTCTCCTCTCTTCTCCTTTCTCGTCCTTCTGCCTTCTTT TCGTCTACGCCACTCAGTCTCTTTTTCAAGAAGCTCCGCAGCTCGGAAATGACTTTTCCA GGTTCTCGACGCGATGGAGAGGTCCTTCCCTCAGCTGTCTCCTTCCATTCCTCCCCATGA GTCTGGAGAATCGTCCGCGGTCCACTATTCTTCTGTCTCACCTCGAGATACCTCAACGTT TTGCCATGAGTCGCATGCAGAGAACGCCCAGAGCGCGTCGACTCCTGCGGATCTCTCTGT GGCTAAAAGTGCCACGGTGCCTGCCTCACGCTGTGGAGAACAAACAGTTCCGTCTCTCAC CATTTCGCCTCAGAGTGAGAAGGGGGGATGTTCTCCGTCAGACTCTCCTGCGGGAGAAGA GACTCGAGGGCGGTCTTCGCCGCGTGCATCTTCCTCCGGGGAAAGGGAGAACTCGCTTTC AGTGCCAGCCTCGGAGTACGAGACAGGAAGAGCGTCTCCGGCGGAGCTTGCCAGCGAAGT TCTGAGGGGAGAGACAAAGAAAAGTGGAGAGGGAGACGAGAGGAGAGAAGAAGGAGAGAG ACAGGGAGACGAGAGGAGAGAAGAAGGAGAGAGAGAGGGAAACGAGAGGAGAGAAGAAGG AGCAAGAGAGGGAGACGAGAGGAGAGAAGAAGGAGAGAGACAGGGAGACGAGAGGAGAGG AGTTGAAGGGCCGAAGAGGGAGAGAGACAGCAGGGAATGCGACGAAAGGAGAAAGGATGA AGAAGGAAGTACTGGCGAGCGCAGGGCTGAAGAGACGGGGGAAGAGGAAAGCAAAGAGGA AGCGTCTGAGAGAGAACGCAGCGTGGAACTGTCGGAGAGGAACGTGAAAGAGAGAGAGCG AGGGGGGGCGACGGCTGCTTCTCCTCTTCCATCTACAGTCAGAGATCCGGGATTTCAGAG CGAAGTGAGGACTGAGAGCGCCTTCTCGCGCTCCAGCGCTTACAGCATTGTCTACTCAGG TCGAACCACTCGCTCTGAACGGACAGAGGGAGAGAAGCGGAGTCGGGGAGGCGGCGCCTC CGCAACGACGCCGTCGTCGTCATCTGCTGCCCGCAGCCGCGGAGAAGAGAACACCCGCTT TGAATGCAACATTTGCTTCGACGAGGCCACAGATCCTGTCGTCACTCGCTGCGGGCACCT GTTCTGCTGGACTTGCCTCCACGCCTGGCTGCGGCGGGGGACGTACGAATGCCCCGTCTG CAAGGCGCACACAACAGTCCGCAACGTCATTCCAATTTACGGGCGAGGAGCAGAGAAGCA TCCCCGAGACGCGTCGGAAACAGGCAACTCTGGTGCAGGGAGCGTTCCCGAGAGGCCTCG GGCAGAACGGCCAGAGCCTGAGCCCCAGAGTCGATCGGGCGCCAGTTTCGGGGGAGGAAC TGGCGGCGCGACGTTTTCCTTTGGCCTGTTTCCTTTCTTCGGCTTGGGCGTGACTTGGGG AGGCGGAGTGTTGAACTCGGGATTCTCCTCCTCTGCCTCTTCAGCCTTCGACTGGCTCTT CTTTCCGCCTGGTGCTCACCAGCGCGATCGTGGAGCTCCTCGACAAGACCAAGTTCTCAC AGAGGAACAACAGCGCATGCAGTCCCTCGGCTTCCTCCTGCTCGCTTTCTGCTTCGTTCT ATACATAATTTTCCTTGCCTAGAACGGCTGCTTTCTGTCGACGGCAACTTGCGGCACAAG ACCTCTCGCCTTGTCGTTGTGCGCGCTCCCAGTCAAGGGAACAGAACAAGCGCATGCAAG CGAGAGCGCCGAGTGAACAAAGCAAAAGGGCAGTTTACGGAGACATAGGAGTCGCTCCCA GGATCGCGAAGCATGGGGTGTCGACCGACCTAGACGTTGCGGGTCTTTTTCCGGCTTCAG AGGGAACATGTGAAGCAGCGTATGAGCAGAAGCTCGTTTGCTTCACGGCTGTTTCTCCCC GCGTTGGATTTAGGACGCAACTAAGCAAGCCACGCAAGCAGTCGTGACAAGAACTGTTTT CCGCGCACACAGCTTGCCCCCCTGGGATTCCTGGCGTGGTGGCCGTTGCTGCGCCTCTCT CATTTTGTCTTCTGGGTCGGCGCGCGGGAACGAGTAAAAGACTTTTTTGCCGTGTTTGCG CCAGGATGTAGCGACGAAAAAATGCGTTTGATCTAGTTGTGCGTTCTGGAATGCATTTCA AGCATGTTCTTGTCAGTGCTGTCGTCTGTGTGTGTGTGCATACCTCCCCTACCGCACATG CATGCGAGGAATACGAGGTTTAGGCGGTCCCAGACTCGAGAGGTTCGGACTGCACGGGGT AGTGACTGCTTCAATTTCCACTTGAAGAGATGACAGAAAGCGCTTTTGCTGGCGTTGGGG AACCGCGGT
  • Download Fasta

  • Fasta :-

    MERSFPQLSPSIPPHESGESSAVHYSSVSPRDTSTFCHESHAENAQSASTPADLSVAKSA TVPASRCGEQTVPSLTISPQSEKGGCSPSDSPAGEETRGRSSPRASSSGERENSLSVPAS EYETGRASPAELASEVLRGETKKSGEGDERREEGERQGDERREEGEREGNERREEGAREG DERREEGERQGDERRGVEGPKRERDSRECDERRKDEEGSTGERRAEETGEEESKEEASER ERSVELSERNVKERERGGATAASPLPSTVRDPGFQSEVRTESAFSRSSAYSIVYSGRTTR SERTEGEKRSRGGGASATTPSSSSAARSRGEENTRFECNICFDEATDPVVTRCGHLFCWT CLHAWLRRGTYECPVCKAHTTVRNVIPIYGRGAEKHPRDASETGNSGAGSVPERPRAERP EPEPQSRSGASFGGGTGGATFSFGLFPFFGLGVTWGGGVLNSGFSSSASSAFDWLFFPPG AHQRDRGAPRQDQVLTEEQQRMQSLGFLLLAFCFVLYIIFLA

  • title: Zn binding site
  • coordinates: C338,C341,C353,H355,C358,C361,C373,C376
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_20560087 SKGGCSPSDS0.996unspTGME49_20560087 SKGGCSPSDS0.996unspTGME49_20560087 SKGGCSPSDS0.996unspTGME49_205600102 SRGRSSPRAS0.998unspTGME49_205600106 SSPRASSSGE0.996unspTGME49_205600107 SPRASSSGER0.996unspTGME49_205600120 SSVPASEYET0.993unspTGME49_205600128 STGRASPAEL0.997unspTGME49_205600144 SETKKSGEGD0.996unspTGME49_205600206 SRERDSRECD0.998unspTGME49_205600233 SGEEESKEEA0.997unspTGME49_205600238 SKEEASERER0.995unspTGME49_205600243 SERERSVELS0.996unspTGME49_205600285 SESAFSRSSA0.992unspTGME49_205600470 SSSASSAFDW0.993unspTGME49_20560029 SYSSVSPRDT0.998unspTGME49_20560081 SISPQSEKGG0.997unsp

TGME49_005600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India