TGME49_210778 | hemimethylated DNA binding domain-containing protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003677      

  • Computed_GO_Functions:  DNA binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TGME49_210778OTHER0.9998870.0000890.000024
No Results

  • Fasta :-

    >TGME49_210778 MEDFLSIAHGNPLDGPMAETPRWHPAEWEAVLGNMESAVLKIDFSQSLGNWASIREQSTF NVTMADSTVVCTHPQRRDDDLFMEFPQSTQNAKSNGLTPKRADAEPKRLVSAFPEMRDYL RTARLRWIVDRCFQFKDGDASEWTYEICVGKKVTQFAGNQKAGKTIGKTLFEWGTYKIGH DQLWANGTLTQIYGNGTGGRQTEVFFECLDQYPTVTAIEEVRESELRMWVGASMFCDFRP TNPTPPLLEALLRPLEGWCANFTTTGFWSYEYCHPDSLVQFHKDSSGDVRDPMFLLGTLH TSTPSSTFMWKTHASADFPMLRGKGAGVNTNSRPKFRFLPVQLVDFPSELNRGREEKPQQ VLAMELTKGTLCDSADVQRSTRVLFECPDDFATLATHQVMKVMETSPCHHELLIHTPLVC PHPRLLPPRPKEPQQVNCVPVESHQLDSPHVSEANHVKVTAGTAVDPGLEAIPSSYLPDG KISLNGSHFGMRQYKRSRSSRKSPAFRVGRLVRHRWSKYTAVVLSWDRSCEAPPDWTAKV YEHYPESSSHKPHYLLLVDQAAVREPQLPLFAYVPEVALEPAPAGQGLFRHPLTSYFFHH FSTHSLTSN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_210778.fa Sequence name : TGME49_210778 Sequence length : 609 VALUES OF COMPUTED PARAMETERS Coef20 : 2.906 CoefTot : 0.000 ChDiff : -6 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.588 0.888 -0.010 0.496 MesoH : -0.445 0.004 -0.419 0.155 MuHd_075 : 4.420 7.284 1.134 1.433 MuHd_095 : 24.152 8.861 4.493 3.216 MuHd_100 : 17.260 6.911 3.539 2.545 MuHd_105 : 10.801 10.221 2.793 2.548 Hmax_075 : 4.667 8.700 -0.490 3.600 Hmax_095 : 12.100 6.737 0.711 4.280 Hmax_100 : 12.100 8.900 0.711 4.280 Hmax_105 : 1.983 6.417 -0.621 2.963 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9645 0.0355 DFMC : 0.9086 0.0914
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 609 TGME49_210778 MEDFLSIAHGNPLDGPMAETPRWHPAEWEAVLGNMESAVLKIDFSQSLGNWASIREQSTFNVTMADSTVVCTHPQRRDDD 80 LFMEFPQSTQNAKSNGLTPKRADAEPKRLVSAFPEMRDYLRTARLRWIVDRCFQFKDGDASEWTYEICVGKKVTQFAGNQ 160 KAGKTIGKTLFEWGTYKIGHDQLWANGTLTQIYGNGTGGRQTEVFFECLDQYPTVTAIEEVRESELRMWVGASMFCDFRP 240 TNPTPPLLEALLRPLEGWCANFTTTGFWSYEYCHPDSLVQFHKDSSGDVRDPMFLLGTLHTSTPSSTFMWKTHASADFPM 320 LRGKGAGVNTNSRPKFRFLPVQLVDFPSELNRGREEKPQQVLAMELTKGTLCDSADVQRSTRVLFECPDDFATLATHQVM 400 KVMETSPCHHELLIHTPLVCPHPRLLPPRPKEPQQVNCVPVESHQLDSPHVSEANHVKVTAGTAVDPGLEAIPSSYLPDG 480 KISLNGSHFGMRQYKRSRSSRKSPAFRVGRLVRHRWSKYTAVVLSWDRSCEAPPDWTAKVYEHYPESSSHKPHYLLLVDQ 560 AAVREPQLPLFAYVPEVALEPAPAGQGLFRHPLTSYFFHHFSTHSLTSN 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_210778 22 PMAETPR|WH 0.090 . TGME49_210778 41 MESAVLK|ID 0.067 . TGME49_210778 55 GNWASIR|EQ 0.109 . TGME49_210778 76 VCTHPQR|RD 0.081 . TGME49_210778 77 CTHPQRR|DD 0.192 . TGME49_210778 93 QSTQNAK|SN 0.082 . TGME49_210778 100 SNGLTPK|RA 0.087 . TGME49_210778 101 NGLTPKR|AD 0.106 . TGME49_210778 107 RADAEPK|RL 0.070 . TGME49_210778 108 ADAEPKR|LV 0.292 . TGME49_210778 117 SAFPEMR|DY 0.082 . TGME49_210778 121 EMRDYLR|TA 0.071 . TGME49_210778 124 DYLRTAR|LR 0.149 . TGME49_210778 126 LRTARLR|WI 0.104 . TGME49_210778 131 LRWIVDR|CF 0.103 . TGME49_210778 136 DRCFQFK|DG 0.113 . TGME49_210778 151 YEICVGK|KV 0.078 . TGME49_210778 152 EICVGKK|VT 0.092 . TGME49_210778 161 QFAGNQK|AG 0.068 . TGME49_210778 164 GNQKAGK|TI 0.093 . TGME49_210778 168 AGKTIGK|TL 0.066 . TGME49_210778 177 FEWGTYK|IG 0.068 . TGME49_210778 200 GNGTGGR|QT 0.115 . TGME49_210778 222 TAIEEVR|ES 0.079 . TGME49_210778 227 VRESELR|MW 0.083 . TGME49_210778 239 SMFCDFR|PT 0.086 . TGME49_210778 253 LLEALLR|PL 0.098 . TGME49_210778 283 SLVQFHK|DS 0.088 . TGME49_210778 290 DSSGDVR|DP 0.129 . TGME49_210778 311 SSTFMWK|TH 0.061 . TGME49_210778 322 ADFPMLR|GK 0.135 . TGME49_210778 324 FPMLRGK|GA 0.100 . TGME49_210778 333 GVNTNSR|PK 0.087 . TGME49_210778 335 NTNSRPK|FR 0.059 . TGME49_210778 337 NSRPKFR|FL 0.179 . TGME49_210778 352 FPSELNR|GR 0.131 . TGME49_210778 354 SELNRGR|EE 0.085 . TGME49_210778 357 NRGREEK|PQ 0.127 . TGME49_210778 368 LAMELTK|GT 0.060 . TGME49_210778 379 DSADVQR|ST 0.152 . TGME49_210778 382 DVQRSTR|VL 0.224 . TGME49_210778 401 ATHQVMK|VM 0.076 . TGME49_210778 424 LVCPHPR|LL 0.087 . TGME49_210778 429 PRLLPPR|PK 0.133 . TGME49_210778 431 LLPPRPK|EP 0.064 . TGME49_210778 458 SEANHVK|VT 0.067 . TGME49_210778 481 SYLPDGK|IS 0.056 . TGME49_210778 492 GSHFGMR|QY 0.110 . TGME49_210778 495 FGMRQYK|RS 0.139 . TGME49_210778 496 GMRQYKR|SR 0.239 . TGME49_210778 498 RQYKRSR|SS 0.155 . TGME49_210778 501 KRSRSSR|KS 0.473 . TGME49_210778 502 RSRSSRK|SP 0.115 . TGME49_210778 507 RKSPAFR|VG 0.101 . TGME49_210778 510 PAFRVGR|LV 0.266 . TGME49_210778 513 RVGRLVR|HR 0.230 . TGME49_210778 515 GRLVRHR|WS 0.085 . TGME49_210778 518 VRHRWSK|YT 0.235 . TGME49_210778 528 VVLSWDR|SC 0.095 . TGME49_210778 539 PPDWTAK|VY 0.077 . TGME49_210778 551 PESSSHK|PH 0.068 . TGME49_210778 564 VDQAAVR|EP 0.070 . TGME49_210778 590 AGQGLFR|HP 0.085 . ____________________________^_________________

  • Fasta :-

    >TGME49_210778 ATGGAGGATTTCTTGTCCATCGCTCACGGCAACCCGCTGGATGGACCGATGGCAGAAACG CCGAGGTGGCACCCGGCAGAGTGGGAGGCGGTCCTTGGGAACATGGAAAGCGCCGTTTTG AAAATCGACTTCTCTCAGAGCCTTGGCAACTGGGCGTCCATCAGAGAGCAGTCCACGTTC AACGTGACGATGGCGGACTCGACCGTCGTATGCACGCACCCGCAGCGACGAGATGACGAC CTTTTCATGGAGTTCCCTCAGAGTACACAGAACGCAAAGAGCAACGGCTTGACCCCTAAG AGAGCAGACGCGGAACCGAAACGCTTAGTTTCGGCCTTCCCGGAAATGCGCGATTACCTG CGAACCGCTCGACTCAGATGGATCGTTGACCGGTGCTTCCAGTTCAAAGACGGAGACGCT TCGGAGTGGACCTATGAAATCTGCGTGGGGAAGAAAGTGACGCAGTTCGCAGGCAACCAG AAAGCCGGGAAGACGATAGGCAAAACGCTCTTTGAGTGGGGGACGTACAAGATAGGTCAC GACCAGCTATGGGCGAACGGCACTTTGACTCAGATCTATGGAAACGGCACCGGAGGACGG CAGACGGAAGTCTTCTTCGAGTGTCTTGACCAGTATCCGACAGTTACGGCAATCGAAGAA GTTCGCGAAAGCGAGTTGCGCATGTGGGTTGGAGCCTCCATGTTTTGCGACTTCCGTCCA ACCAACCCGACACCTCCCTTGCTCGAGGCGCTCCTGCGGCCACTCGAAGGCTGGTGCGCG AACTTCACGACGACTGGATTCTGGTCCTACGAATACTGTCATCCAGACAGCTTGGTCCAA TTTCACAAAGACAGTTCAGGCGATGTCAGAGACCCGATGTTCCTCCTGGGAACTCTGCAC ACGTCGACACCGTCGTCGACATTCATGTGGAAAACCCACGCGTCTGCAGACTTCCCCATG CTCCGAGGAAAAGGCGCAGGCGTCAACACAAACAGTCGGCCGAAGTTCCGCTTTCTGCCG GTCCAGCTTGTGGACTTTCCCTCCGAGCTCAACAGGGGACGAGAGGAGAAACCCCAGCAG GTCCTCGCTATGGAGTTGACGAAGGGAACACTCTGTGACAGCGCGGATGTCCAGCGGAGC ACTCGCGTCCTTTTCGAGTGCCCTGACGACTTCGCCACGCTCGCCACGCATCAGGTCATG AAAGTGATGGAGACATCGCCGTGCCACCATGAGCTACTGATACACACCCCTCTAGTCTGT CCACACCCACGACTGCTACCACCCCGGCCGAAGGAACCGCAGCAAGTCAACTGCGTCCCA GTGGAAAGCCATCAGTTGGATTCGCCTCACGTGTCTGAGGCCAACCACGTGAAGGTCACT GCCGGGACGGCAGTAGATCCAGGGCTCGAAGCGATCCCGTCAAGTTATCTTCCTGATGGC AAAATCAGCTTAAACGGGAGCCACTTCGGCATGAGACAATATAAGAGAAGTCGTTCATCT CGGAAGTCCCCTGCTTTCAGGGTTGGACGCCTCGTCAGGCATCGGTGGTCTAAATACACG GCAGTGGTGCTTTCGTGGGACCGCAGCTGCGAAGCCCCTCCAGATTGGACTGCGAAGGTT TACGAGCACTATCCTGAATCATCCAGTCACAAGCCTCATTATCTCCTCTTGGTGGACCAG GCAGCTGTAAGAGAACCTCAACTGCCCCTATTTGCCTACGTGCCAGAAGTTGCCCTAGAG CCAGCACCTGCCGGCCAAGGACTTTTCCGACATCCTCTCACCTCATATTTCTTTCACCAT TTTTCAACTCACAGCCTCACAAGCAATTAAAATTGGAATATCTGAGTTGAACGATAAACT GGCTTCTTCACTGGGAGTATCACACGC
  • Download Fasta

  • Fasta :-

    MEDFLSIAHGNPLDGPMAETPRWHPAEWEAVLGNMESAVLKIDFSQSLGNWASIREQSTF NVTMADSTVVCTHPQRRDDDLFMEFPQSTQNAKSNGLTPKRADAEPKRLVSAFPEMRDYL RTARLRWIVDRCFQFKDGDASEWTYEICVGKKVTQFAGNQKAGKTIGKTLFEWGTYKIGH DQLWANGTLTQIYGNGTGGRQTEVFFECLDQYPTVTAIEEVRESELRMWVGASMFCDFRP TNPTPPLLEALLRPLEGWCANFTTTGFWSYEYCHPDSLVQFHKDSSGDVRDPMFLLGTLH TSTPSSTFMWKTHASADFPMLRGKGAGVNTNSRPKFRFLPVQLVDFPSELNRGREEKPQQ VLAMELTKGTLCDSADVQRSTRVLFECPDDFATLATHQVMKVMETSPCHHELLIHTPLVC PHPRLLPPRPKEPQQVNCVPVESHQLDSPHVSEANHVKVTAGTAVDPGLEAIPSSYLPDG KISLNGSHFGMRQYKRSRSSRKSPAFRVGRLVRHRWSKYTAVVLSWDRSCEAPPDWTAKV YEHYPESSSHKPHYLLLVDQAAVREPQLPLFAYVPEVALEPAPAGQGLFRHPLTSYFFHH FSTHSLTSN

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_210778503 SSSRKSPAFR0.997unspTGME49_210778503 SSSRKSPAFR0.997unspTGME49_210778503 SSSRKSPAFR0.997unspTGME49_210778499 SKRSRSSRKS0.996unspTGME49_210778500 SRSRSSRKSP0.998unsp

TGME49_010780      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India