TGME49_229030 | hypothetical protein

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  • Fasta :-

    >TGME49_229030 MAGKGKEEQAAAAPVASVPEENSASSATDEYQAEEEEEQKRLQSILSNMRRVSNLYSEME LLRVVEDYVTDCMVHLGYQEHRLFSNIRLLVATFACCIAAYASFGIPVATDGPSLKLSIA AFFGSLLVLLLVETLWVKNAIACFKDKDGDSFFIDSHIDRSSNELVLAIRQKSLYLSTAS NVGRFFDSKGYLLIDTLYEELTKLLQDFENGLTDTAKKVARLRRKKNA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_229030.fa Sequence name : TGME49_229030 Sequence length : 228 VALUES OF COMPUTED PARAMETERS Coef20 : 3.141 CoefTot : -0.585 ChDiff : -6 ZoneTo : 6 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.947 2.324 0.509 0.785 MesoH : 0.517 1.144 -0.025 0.434 MuHd_075 : 12.280 9.230 3.022 2.081 MuHd_095 : 8.995 2.033 1.649 0.671 MuHd_100 : 7.892 5.281 1.558 1.179 MuHd_105 : 9.529 9.425 2.747 2.542 Hmax_075 : 5.017 6.300 -1.144 2.462 Hmax_095 : 6.388 6.500 -0.498 3.300 Hmax_100 : 6.700 6.500 -0.450 2.750 Hmax_105 : 5.017 6.650 -0.154 3.022 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9903 0.0097 DFMC : 0.9879 0.0121
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 228 TGME49_229030 MAGKGKEEQAAAAPVASVPEENSASSATDEYQAEEEEEQKRLQSILSNMRRVSNLYSEMELLRVVEDYVTDCMVHLGYQE 80 HRLFSNIRLLVATFACCIAAYASFGIPVATDGPSLKLSIAAFFGSLLVLLLVETLWVKNAIACFKDKDGDSFFIDSHIDR 160 SSNELVLAIRQKSLYLSTASNVGRFFDSKGYLLIDTLYEELTKLLQDFENGLTDTAKKVARLRRKKNA 240 ................................................................................ 80 ................................................................................ 160 .................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_229030 4 ---MAGK|GK 0.071 . TGME49_229030 6 -MAGKGK|EE 0.065 . TGME49_229030 40 EEEEEQK|RL 0.062 . TGME49_229030 41 EEEEQKR|LQ 0.133 . TGME49_229030 50 SILSNMR|RV 0.089 . TGME49_229030 51 ILSNMRR|VS 0.130 . TGME49_229030 63 SEMELLR|VV 0.133 . TGME49_229030 82 LGYQEHR|LF 0.101 . TGME49_229030 88 RLFSNIR|LL 0.083 . TGME49_229030 116 TDGPSLK|LS 0.077 . TGME49_229030 138 VETLWVK|NA 0.061 . TGME49_229030 145 NAIACFK|DK 0.069 . TGME49_229030 147 IACFKDK|DG 0.077 . TGME49_229030 160 IDSHIDR|SS 0.151 . TGME49_229030 170 ELVLAIR|QK 0.086 . TGME49_229030 172 VLAIRQK|SL 0.088 . TGME49_229030 184 TASNVGR|FF 0.173 . TGME49_229030 189 GRFFDSK|GY 0.065 . TGME49_229030 203 LYEELTK|LL 0.063 . TGME49_229030 217 GLTDTAK|KV 0.075 . TGME49_229030 218 LTDTAKK|VA 0.074 . TGME49_229030 221 TAKKVAR|LR 0.115 . TGME49_229030 223 KKVARLR|RK 0.080 . TGME49_229030 224 KVARLRR|KK 0.490 . TGME49_229030 225 VARLRRK|KN 0.081 . TGME49_229030 226 ARLRRKK|NA 0.383 . ____________________________^_________________

  • Fasta :-

    >TGME49_229030 CTCTTTTCAACTCGTGTCGCTGCACAAGAAGTGAATCTCGAATTCCTCTGCGCTAAGGAG CACTGAACGCACTTTTCTTTCTTCGACCTTGTCCCCCTGTTTCCCCTGGCCTCGCCTCGT TTCGCGGTGTGTCTCGCTTGCTTGTCTTCCGGCTTGCCTCCTTTCCTCGACACCTCGTCA GTGGAACTTCCTCTCCACCTATCGGGAAACTGCTGTCGCTTTCTCTCTCTTCTCTCGTTC TTGCTCCTTCGCTTTCCTTCTTTTTTCCTCCCCACTCCAACGCGTTTCAACTCCGAGGAA GACTTGGCGATGACACCGAGAGGAGGGTCCGCCAAGCCCCGCAACAGTTCCCGCGCAAGA ATCGTGGAAAGAAACTCGCAAAAAAGCGCCGAATTCCGAATTCTGGAGTGTATGTTCACT GAAGGACGCCGGCGGTAGAGAGCAATCACGACAAGGAGGAGCCGCGTCCACGGGAGGTAC CCCGCGAACACGCAGGGGAAGAGAATTCGCTTTTCCCTCTCTGTCTTGTGCACCTTTGTT GATTTCTTTATAAAGACATTCTGTTAGAGGCGTCGATCCTCTTGCTTGTTCACGCCTTCT TTTTCTTCTCTTTCTTCTTGCTCTCATTCATCCTCTTCCTCCGATAACACAGTGGGAAAC CTCTCCAGAGGCACTCTCCAGTTCTCTCGTCCCGTTTTTCCTTCCATCCCGTTTTTCCTT CCACCTACTTCCTGCCTCGTCTTCTTCAGTTTTCTTTCTCTCCGCAGCGCTGCTCGCGTA CGAAGAGAACACACGCGAAAGCGACATCCCTGCTACGGAACGCCGTCTTCTGTTCGCATG CAAAAGAATCTGGTGATTTCTGGAGAGTCAGCTGTCCGTCTGTGGAGAACAAGATGGCTG GGAAAGGCAAAGAGGAGCAGGCAGCTGCGGCTCCCGTCGCCTCAGTGCCCGAAGAGAACT CCGCCTCCAGTGCGACAGACGAGTACCAGGCAGAGGAGGAGGAGGAACAGAAGCGCCTTC AGTCTATTCTTTCAAACATGCGGCGTGTCTCCAACTTGTACAGCGAGATGGAGCTGTTGC GCGTCGTCGAAGATTACGTCACTGACTGTATGGTGCACTTGGGCTATCAAGAGCACCGAC TGTTCTCAAACATTCGTCTCCTGGTCGCCACCTTCGCTTGCTGCATAGCGGCTTACGCGT CTTTTGGAATCCCTGTCGCGACCGACGGTCCGTCTCTCAAGCTTTCGATTGCCGCGTTCT TCGGTTCGCTCCTCGTTCTCCTCCTCGTCGAGACGCTCTGGGTGAAAAACGCGATTGCAT GCTTCAAAGACAAGGACGGCGACTCCTTCTTCATCGACAGTCACATCGATCGGAGCTCGA ATGAACTCGTCCTCGCGATACGGCAGAAAAGTCTGTACCTCTCCACAGCCTCCAACGTCG GTCGGTTCTTTGACAGCAAAGGGTACTTGCTGATCGACACACTGTACGAGGAGCTCACGA AACTGCTGCAAGACTTCGAGAACGGCCTCACAGACACAGCAAAGAAGGTTGCTCGACTCA GAAGGAAGAAGAACGCATGA
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  • Fasta :-

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IDSitePeptideScoreMethod
TGME49_22903026 SNSASSATDE0.996unsp

TGME49_029030      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India