TGME49_237893 | hypothetical protein

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  • Fasta :-

    >TGME49_237893 MVLSSGWRALIRCCQPVLATPNVSASDKQELAPSFVGRVDEEELNLESETKVNYRVHATL QGDICWTPSTASEEFDPESHSCADDAVIVSSFGSRVDAAELDLDRDADIVYDSAYEADNE EDAWSETGSEEDADESPRSSEVLTQADEDGQSFEGDLATTNFVASTQTGEDFSGDEWEIP EEISPAEGMTTRTPTPPGGSPGDCCGDGNEKKSSVDSQPSTRRSNPCVNL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_237893.fa Sequence name : TGME49_237893 Sequence length : 230 VALUES OF COMPUTED PARAMETERS Coef20 : 4.801 CoefTot : 0.462 ChDiff : -37 ZoneTo : 26 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.288 0.865 0.025 0.249 MesoH : -1.411 -0.264 -0.573 0.023 MuHd_075 : 26.027 16.004 7.482 4.796 MuHd_095 : 37.687 28.000 11.417 9.893 MuHd_100 : 36.242 25.173 10.777 9.245 MuHd_105 : 37.585 20.926 10.899 8.222 Hmax_075 : 14.000 20.883 6.405 4.650 Hmax_095 : 16.625 21.350 6.198 6.458 Hmax_100 : 18.000 21.700 6.460 6.900 Hmax_105 : 13.700 17.100 5.546 5.620 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3031 0.6969 DFMC : 0.3424 0.6576 This protein is probably imported in mitochondria. f(Ser) = 0.1538 f(Arg) = 0.0769 CMi = 0.86580 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 230 TGME49_237893 MVLSSGWRALIRCCQPVLATPNVSASDKQELAPSFVGRVDEEELNLESETKVNYRVHATLQGDICWTPSTASEEFDPESH 80 SCADDAVIVSSFGSRVDAAELDLDRDADIVYDSAYEADNEEDAWSETGSEEDADESPRSSEVLTQADEDGQSFEGDLATT 160 NFVASTQTGEDFSGDEWEIPEEISPAEGMTTRTPTPPGGSPGDCCGDGNEKKSSVDSQPSTRRSNPCVNL 240 ................................................................................ 80 ................................................................................ 160 ...................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_237893 8 VLSSGWR|AL 0.084 . TGME49_237893 12 GWRALIR|CC 0.124 . TGME49_237893 28 NVSASDK|QE 0.061 . TGME49_237893 38 APSFVGR|VD 0.173 . TGME49_237893 51 NLESETK|VN 0.064 . TGME49_237893 55 ETKVNYR|VH 0.081 . TGME49_237893 95 VSSFGSR|VD 0.089 . TGME49_237893 105 AELDLDR|DA 0.111 . TGME49_237893 138 DADESPR|SS 0.122 . TGME49_237893 192 AEGMTTR|TP 0.086 . TGME49_237893 211 CGDGNEK|KS 0.052 . TGME49_237893 212 GDGNEKK|SS 0.222 . TGME49_237893 222 DSQPSTR|RS 0.085 . TGME49_237893 223 SQPSTRR|SN 0.170 . ____________________________^_________________

  • Fasta :-

    >TGME49_237893 ATGGTGCTCTCAAGTGGATGGCGTGCTCTGATACGCTGTTGTCAGCCGGTGCTCGCGACC CCTAACGTGAGTGCCTCTGACAAGCAAGAGCTTGCTCCCTCCTTCGTCGGCCGCGTCGAC GAAGAGGAACTAAACTTGGAGTCAGAGACCAAAGTAAACTACCGCGTCCATGCTACACTG CAAGGAGACATCTGCTGGACACCGAGTACGGCGAGCGAGGAGTTCGACCCGGAGTCCCAC TCTTGCGCTGACGATGCAGTCATTGTTTCGTCATTTGGGAGCCGAGTCGACGCCGCGGAA CTGGATCTGGACCGAGACGCTGACATCGTCTATGATTCTGCGTACGAAGCAGACAACGAA GAAGACGCGTGGTCAGAAACAGGGTCGGAAGAAGACGCGGACGAATCTCCTAGAAGTAGC GAGGTCTTGACTCAAGCTGACGAAGATGGCCAGAGTTTCGAAGGAGACCTTGCTACTACG AACTTCGTCGCGTCGACGCAGACAGGCGAAGACTTCTCTGGAGACGAATGGGAAATTCCT GAGGAGATTTCACCAGCAGAGGGGATGACGACGAGGACACCAACCCCTCCCGGAGGATCA CCGGGAGATTGCTGCGGAGATGGAAATGAGAAAAAATCTTCGGTCGATTCGCAGCCCTCC ACGAGAAGGAGCAACCCGTGTGTCAATCTCTGA
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  • Fasta :-

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_237893129 SSETGSEEDA0.996unspTGME49_237893129 SSETGSEEDA0.996unspTGME49_237893129 SSETGSEEDA0.996unspTGME49_237893136 SDADESPRSS0.996unspTGME49_237893173 SGEDFSGDEW0.992unspTGME49_237893200 SPPGGSPGDC0.993unspTGME49_237893213 SNEKKSSVDS0.995unspTGME49_237893217 SSSVDSQPST0.991unspTGME49_23789372 SPSTASEEFD0.992unspTGME49_237893113 SIVYDSAYEA0.994unsp

TGME49_037893      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India