TGME49_239500 | proteasome subunit alpha type, putative

_IDPredictionOTHERSPmTPCS_Position
TGME49_239500OTHER0.9999050.0000390.000055
No Results

  • Fasta :-

    >TGME49_239500 MARRYDSRTTTFSPEGRLYQVEYALEAINNASSTLGILATDGVVLAADKMVTSKLLDQGR TKEKIYKVDDHVMCAVAGLTADANILINQARLTGQRYLYAYDEPQPIEQLVLQICDVKQS YTQFGGLRPFGVSFLFAGWDRHYGFQLYHTDPSGNYSGWKATAIGVNSQSAQSILKQEWK EDLDVDGALLLAAKVLNKTMDTAAPTADKLEIAIVRKDPADDSRLIQRLLSNEEVTALIK KAQELQAEEQAP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_239500.fa Sequence name : TGME49_239500 Sequence length : 252 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.254 ChDiff : -6 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.147 1.488 0.174 0.528 MesoH : -0.636 0.275 -0.394 0.177 MuHd_075 : 23.056 5.387 3.615 6.134 MuHd_095 : 14.841 4.720 3.134 2.857 MuHd_100 : 18.488 8.050 3.829 4.676 MuHd_105 : 19.679 11.334 4.048 6.197 Hmax_075 : -3.850 -2.975 -3.651 0.210 Hmax_095 : -1.312 -1.050 -2.054 0.411 Hmax_100 : 10.800 3.300 0.402 2.970 Hmax_105 : -1.283 -0.933 -1.926 2.065 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8797 0.1203 DFMC : 0.8128 0.1872
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 252 TGME49_239500 MARRYDSRTTTFSPEGRLYQVEYALEAINNASSTLGILATDGVVLAADKMVTSKLLDQGRTKEKIYKVDDHVMCAVAGLT 80 ADANILINQARLTGQRYLYAYDEPQPIEQLVLQICDVKQSYTQFGGLRPFGVSFLFAGWDRHYGFQLYHTDPSGNYSGWK 160 ATAIGVNSQSAQSILKQEWKEDLDVDGALLLAAKVLNKTMDTAAPTADKLEIAIVRKDPADDSRLIQRLLSNEEVTALIK 240 KAQELQAEEQAP 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_239500 3 ----MAR|RY 0.096 . TGME49_239500 4 ---MARR|YD 0.146 . TGME49_239500 8 ARRYDSR|TT 0.106 . TGME49_239500 17 TFSPEGR|LY 0.096 . TGME49_239500 49 VVLAADK|MV 0.066 . TGME49_239500 54 DKMVTSK|LL 0.082 . TGME49_239500 60 KLLDQGR|TK 0.095 . TGME49_239500 62 LDQGRTK|EK 0.065 . TGME49_239500 64 QGRTKEK|IY 0.067 . TGME49_239500 67 TKEKIYK|VD 0.073 . TGME49_239500 91 ILINQAR|LT 0.120 . TGME49_239500 96 ARLTGQR|YL 0.088 . TGME49_239500 118 LQICDVK|QS 0.068 . TGME49_239500 128 TQFGGLR|PF 0.094 . TGME49_239500 141 LFAGWDR|HY 0.118 . TGME49_239500 160 GNYSGWK|AT 0.077 . TGME49_239500 176 SAQSILK|QE 0.062 . TGME49_239500 180 ILKQEWK|ED 0.064 . TGME49_239500 194 ALLLAAK|VL 0.061 . TGME49_239500 198 AAKVLNK|TM 0.066 . TGME49_239500 209 AAPTADK|LE 0.058 . TGME49_239500 216 LEIAIVR|KD 0.070 . TGME49_239500 217 EIAIVRK|DP 0.085 . TGME49_239500 224 DPADDSR|LI 0.096 . TGME49_239500 228 DSRLIQR|LL 0.120 . TGME49_239500 240 EVTALIK|KA 0.057 . TGME49_239500 241 VTALIKK|AQ 0.088 . ____________________________^_________________

  • Fasta :-

    >TGME49_239500 TTTTTTCAGCCGGCTGCTTGGCACTTTTCTCTGGGTTCTTGTGCCTCGTGGTTCACTCAA CGCACTGTTTTTTCTGTGCAAGTGCTCTCCTCCAGGTGCGGGAGTGTTTCTTCCTCTCAG TCTTTTTATGCAGAGATGTGCAGGCACCGGAGTACAGTCCGTGTGTCTTAATCGCTCCTT GAATGTGAAGGCGTGTGCAGTTTCTTTCCTCGTTTTCTCTCTTCTTGTCTCCAGTTTTGT TCCAGAAAAACGACCTCCGTGGAACCCTGAGACCTAAATACCCCAATCTACGTCCTGGAA CCCCTTGCCAGCGTCGCCTTCTGTCTTCCGTTCTTCGCCTTTTCGTTTTCTGTCCTGTTG CTCTCTCGTTTTTCTCCCGTGCTCCTTCTTCTCTGCCTGTTGTTCGCGTTTCTCATTCTT CTTTGTCTCTGTTTCACATCGCAGAGAGCGCCCGTTCGGTCTGGGCGTGGCAACGGCGTG TCTTGTGTTGTTCGTCGCGCCTTTGTTTAAGCTCGAGCAGCCAGCAACCTTTCAGTTTCG ACCGCGTGCGTTTAGACGGAAATCAACATGGCCAGGCGCTACGATTCCAGAACCACAACC TTCTCGCCGGAGGGGCGTCTCTACCAAGTGGAGTACGCGTTAGAGGCAATTAACAATGCG TCTTCAACTCTCGGAATTCTCGCGACCGACGGAGTCGTCCTCGCAGCAGACAAAATGGTC ACTTCCAAGCTGCTGGATCAGGGCAGAACGAAGGAAAAGATCTACAAGGTCGACGACCAC GTCATGTGCGCCGTTGCCGGCCTCACGGCAGATGCAAACATTTTGATTAACCAAGCGCGC CTCACTGGACAGCGCTACCTCTACGCGTACGACGAGCCTCAACCCATTGAGCAACTCGTG CTCCAAATCTGCGACGTCAAACAGTCGTACACTCAGTTCGGTGGACTGCGTCCATTCGGA GTCAGCTTTTTGTTTGCGGGGTGGGATCGACACTACGGCTTTCAACTCTACCACACAGAC CCCTCTGGAAACTACTCTGGATGGAAAGCGACGGCGATTGGAGTAAACAGCCAGTCGGCG CAGTCGATTCTGAAACAGGAGTGGAAAGAGGACCTAGATGTCGACGGAGCTTTGCTGTTG GCGGCGAAAGTGCTCAACAAGACAATGGACACGGCAGCGCCAACTGCAGACAAACTGGAG ATTGCGATTGTGAGGAAAGACCCGGCTGACGATTCGCGTTTGATTCAGCGCCTCCTCTCA AACGAAGAGGTTACGGCTCTCATCAAAAAGGCGCAAGAGCTCCAGGCTGAAGAACAGGCT CCGTAAAAATGAGACGGACCACTGAAGCCAATGGTCATTCACCGTCATATGTGACGGGGG GGTTCTGCTGCACTTGTGCCGTCGTACGCAAAGTGTTAGAAAAAGACAATCGATCAAGTG CGTGGGTGTGTCGTTTGTGGGATGGTGGTGAAGCTACCAGTGAGTGTCGTGTAGAAAAAC GAGTTCTGTCTGAAAAGAAAAACGTTCGAGTTTTACGAACAAACAGTAGAATTCGGGGAA ACGGGGGTCACAAGAGCTGCCTTCTATTTCGCCGGCCCAGAAAAAGTCACACCTCGGGTC GCAACATCGTAGATTCCCGTACACGAGAGAATCTGCTTTTTCTCCCTTTCCAAAGTATAG GAAGTGCCTTCGACTCAGGGACACAGCGTCAGAGGCTCGTTGACAGGAACAAATCTGCTG TTGCTTTCGCAAAACATAAATGTGCCTTTAGCCAGACCGTGCTGTTGTTTGAAGCTGGCG AATCCGCGGCTGGAAACAAAAGTGCAGCCGGAAAAGAAGTGGAGGACTGCCACGAATGTA GGCGAACGAATGTGCGATGTAGGAACGTCACATCGTCGGTGCTTTGGAGGTGCACTAAAA
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  • Fasta :-

    MARRYDSRTTTFSPEGRLYQVEYALEAINNASSTLGILATDGVVLAADKMVTSKLLDQGR TKEKIYKVDDHVMCAVAGLTADANILINQARLTGQRYLYAYDEPQPIEQLVLQICDVKQS YTQFGGLRPFGVSFLFAGWDRHYGFQLYHTDPSGNYSGWKATAIGVNSQSAQSILKQEWK EDLDVDGALLLAAKVLNKTMDTAAPTADKLEIAIVRKDPADDSRLIQRLLSNEEVTALIK KAQELQAEEQAP

  • title: active site
  • coordinates: S32,D48,M50,K64,V166
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_239500231 SQRLLSNEEV0.996unspTGME49_239500231 SQRLLSNEEV0.996unspTGME49_239500231 SQRLLSNEEV0.996unspTGME49_2395007 SRRYDSRTTT0.992unspTGME49_23950013 STTTFSPEGR0.99unsp

TGME49_039500      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India