TGME49_245590 | rhomboid protease ROM6

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TGME49_245590OTHER0.8674540.0103400.122206
No Results

  • Fasta :-

    >TGME49_245590 MKKSAGPFIASWRPFVGLPVSLERGKTFSRVLGICTYTPGIRRQMLLSGVSVIPPPLSKN FFRHAHLTGFSPFSSSCRRLFAQNESDVAPFVCRIPNQSVAPGDTQWSVSPVGVHCEHWL KTRCFPGLPAAVFGSHQQVEAALLQRGLSPAKDASERVRSATGEDLVRRERPTSEAGSHP PLPSRSSVSAFQLRSRCDPAVSGPSDSAPCGLSQTSFSLRSSSSSGATTPFSVPAVCPVF LCRSLPRLSGRFSRTRFGKQRKRTEEQEDSKDFDTGPLSSGSIFTVLVGSLLFFDVLRSG LYEHRKLLGAFLMTNAAVFTGWRLAATAGNGTWWTFLMRHFVLCRENLASARIYTFVTSS LSHKSTGHLIFNLFVINQLFRLLSFDLSDRDFASLFGLAALCGGLGHLLVSRQPVLGASA FAYALLWTEATRHSREMFRILPIPFFPLTALQLVQVAMCLEAAMAFLARPAFLARFPASR LLRFAQGISWSGHLGGLAAGCLYSWYKRRVEGDRSWQSFWELCRTYGTSDWRFTWQDLKA STTIFLLECKVMLASTDKERRVLIMRLDKLRREKQLRRQAVSLGGIFH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_245590.fa Sequence name : TGME49_245590 Sequence length : 588 VALUES OF COMPUTED PARAMETERS Coef20 : 3.858 CoefTot : -1.820 ChDiff : 33 ZoneTo : 84 KR : 12 DE : 1 CleavSite : 89 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.129 2.006 0.371 0.726 MesoH : 0.487 0.974 -0.079 0.390 MuHd_075 : 30.819 25.794 9.321 7.439 MuHd_095 : 33.383 23.469 8.760 8.527 MuHd_100 : 31.482 20.557 8.188 7.139 MuHd_105 : 43.069 23.843 9.717 8.618 Hmax_075 : 14.000 11.463 2.128 6.700 Hmax_095 : 11.800 17.100 2.508 6.500 Hmax_100 : 20.000 21.300 3.401 7.120 Hmax_105 : 17.033 17.100 3.512 5.717 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0084 0.9916 DFMC : 0.0109 0.9891 This protein is probably imported in mitochondria. f(Ser) = 0.1310 f(Arg) = 0.0952 CMi = 0.64403 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 588 TGME49_245590 MKKSAGPFIASWRPFVGLPVSLERGKTFSRVLGICTYTPGIRRQMLLSGVSVIPPPLSKNFFRHAHLTGFSPFSSSCRRL 80 FAQNESDVAPFVCRIPNQSVAPGDTQWSVSPVGVHCEHWLKTRCFPGLPAAVFGSHQQVEAALLQRGLSPAKDASERVRS 160 ATGEDLVRRERPTSEAGSHPPLPSRSSVSAFQLRSRCDPAVSGPSDSAPCGLSQTSFSLRSSSSSGATTPFSVPAVCPVF 240 LCRSLPRLSGRFSRTRFGKQRKRTEEQEDSKDFDTGPLSSGSIFTVLVGSLLFFDVLRSGLYEHRKLLGAFLMTNAAVFT 320 GWRLAATAGNGTWWTFLMRHFVLCRENLASARIYTFVTSSLSHKSTGHLIFNLFVINQLFRLLSFDLSDRDFASLFGLAA 400 LCGGLGHLLVSRQPVLGASAFAYALLWTEATRHSREMFRILPIPFFPLTALQLVQVAMCLEAAMAFLARPAFLARFPASR 480 LLRFAQGISWSGHLGGLAAGCLYSWYKRRVEGDRSWQSFWELCRTYGTSDWRFTWQDLKASTTIFLLECKVMLASTDKER 560 RVLIMRLDKLRREKQLRRQAVSLGGIFH 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_245590 2 -----MK|KS 0.059 . TGME49_245590 3 ----MKK|SA 0.288 . TGME49_245590 13 PFIASWR|PF 0.082 . TGME49_245590 24 LPVSLER|GK 0.086 . TGME49_245590 26 VSLERGK|TF 0.068 . TGME49_245590 30 RGKTFSR|VL 0.098 . TGME49_245590 42 TYTPGIR|RQ 0.060 . TGME49_245590 43 YTPGIRR|QM 0.091 . TGME49_245590 59 IPPPLSK|NF 0.059 . TGME49_245590 63 LSKNFFR|HA 0.163 . TGME49_245590 78 PFSSSCR|RL 0.110 . TGME49_245590 79 FSSSCRR|LF 0.181 . TGME49_245590 94 VAPFVCR|IP 0.083 . TGME49_245590 121 HCEHWLK|TR 0.052 . TGME49_245590 123 EHWLKTR|CF 0.085 . TGME49_245590 146 EAALLQR|GL 0.114 . TGME49_245590 152 RGLSPAK|DA 0.080 . TGME49_245590 157 AKDASER|VR 0.088 . TGME49_245590 159 DASERVR|SA 0.213 . TGME49_245590 168 TGEDLVR|RE 0.068 . TGME49_245590 169 GEDLVRR|ER 0.128 . TGME49_245590 171 DLVRRER|PT 0.262 . TGME49_245590 185 HPPLPSR|SS 0.108 . TGME49_245590 194 VSAFQLR|SR 0.128 . TGME49_245590 196 AFQLRSR|CD 0.075 . TGME49_245590 220 QTSFSLR|SS 0.237 . TGME49_245590 243 CPVFLCR|SL 0.105 . TGME49_245590 247 LCRSLPR|LS 0.098 . TGME49_245590 251 LPRLSGR|FS 0.140 . TGME49_245590 254 LSGRFSR|TR 0.291 . TGME49_245590 256 GRFSRTR|FG 0.108 . TGME49_245590 259 SRTRFGK|QR 0.190 . TGME49_245590 261 TRFGKQR|KR 0.121 . TGME49_245590 262 RFGKQRK|RT 0.140 . TGME49_245590 263 FGKQRKR|TE 0.148 . TGME49_245590 271 EEQEDSK|DF 0.079 . TGME49_245590 298 LFFDVLR|SG 0.084 . TGME49_245590 305 SGLYEHR|KL 0.083 . TGME49_245590 306 GLYEHRK|LL 0.125 . TGME49_245590 323 AVFTGWR|LA 0.087 . TGME49_245590 339 WWTFLMR|HF 0.075 . TGME49_245590 345 RHFVLCR|EN 0.079 . TGME49_245590 352 ENLASAR|IY 0.093 . TGME49_245590 364 TSSLSHK|ST 0.156 . TGME49_245590 381 VINQLFR|LL 0.087 . TGME49_245590 390 SFDLSDR|DF 0.081 . TGME49_245590 412 GHLLVSR|QP 0.071 . TGME49_245590 432 LWTEATR|HS 0.084 . TGME49_245590 435 EATRHSR|EM 0.237 . TGME49_245590 439 HSREMFR|IL 0.087 . TGME49_245590 469 AMAFLAR|PA 0.113 . TGME49_245590 475 RPAFLAR|FP 0.097 . TGME49_245590 480 ARFPASR|LL 0.096 . TGME49_245590 483 PASRLLR|FA 0.424 . TGME49_245590 507 CLYSWYK|RR 0.060 . TGME49_245590 508 LYSWYKR|RV 0.326 . TGME49_245590 509 YSWYKRR|VE 0.161 . TGME49_245590 514 RRVEGDR|SW 0.112 . TGME49_245590 524 SFWELCR|TY 0.094 . TGME49_245590 532 YGTSDWR|FT 0.098 . TGME49_245590 539 FTWQDLK|AS 0.060 . TGME49_245590 550 IFLLECK|VM 0.053 . TGME49_245590 558 MLASTDK|ER 0.060 . TGME49_245590 560 ASTDKER|RV 0.098 . TGME49_245590 561 STDKERR|VL 0.112 . TGME49_245590 566 RRVLIMR|LD 0.069 . TGME49_245590 569 LIMRLDK|LR 0.091 . TGME49_245590 571 MRLDKLR|RE 0.087 . TGME49_245590 572 RLDKLRR|EK 0.099 . TGME49_245590 574 DKLRREK|QL 0.122 . TGME49_245590 577 RREKQLR|RQ 0.103 . TGME49_245590 578 REKQLRR|QA 0.132 . ____________________________^_________________

  • Fasta :-

    >TGME49_245590 CTGCGTCAGGATTTTTCCGGAACTCGCCCACCTCCCGCTTCTAGTTATACTATTATTTGT ACAGAGAGAGGCTGTTTGACTGGAGGAAATTGTGCGTCGCTGCCTCAAGCCGACACATTT TTTGGAGTGTGCTGCAGAACGACGCCGTAACAGCTGCGCATGCTCTACAGCTCACTAGCT GTTTGCATGTGCCAGCGTCCTAGACACACGGGAAAATCGATTCGTTTTTTTCTGCCAAAA ATTTAGATACACGCGGGCACATCGTTGAAATTTAAACTGTAGACAACATCCCTTCCCATT TCCGCTGCACGACTTTTTGCATCACGCTCCGACCTTAAGCTGGCGCGACTTTTGCTACTG TTGATGCACCACGCTGTGTGTCAACGGTGTCTTTCAAACTGTTAACATTGTCGCAGAGAT TTTTCAGTGTTGCTTTTAGTACCCATGGGACTTCTCGAGTGTGTCGTGTTCCCGCTATTT TGCGCTGTTACCTCCGTCTCAGCTAGACTCATGCGCGTTTCGTTCACGTCGCTATTCGTG TACTTCGTTTTCCTTTCGACTCTTCCCTGCCCTCTGGGGTTCTTTTTGTCACTATTCCGG TCTATCTGACTCTGACCAGGAGTATCTAAGCACGCTGTGAAGAGCCGCTTCTAACACACG GATGCGCTTGTATCGACGCCCATGAAACTGCAGAGAGATTTACCTGGTACAGTGTCTTTC GTTCCTCCCAGAAACTCCAGCTTGCCTTCATCGTTTGGTGTAGCAGCCTTGCCCCATGTG CTTCTCCAGTTGGCCATTCAGGCGCTCTTTGCTTCCCGACACATTTCCACCGCGTTGGAC TGACAGCCCGTGTTGTCCAGCAGAGCAATGAAACTTTCATCGTTTCCGGCGACGACCACA CGGGCCGCTCCCCGACAAACTAACCTTTTTTCTGTTGCCACGTTTTTCCGGTTTCAGGCA TGAAGAAATCAGCTGGACCTTTCATCGCGTCTTGGCGGCCTTTTGTAGGTCTGCCGGTCT CCCTAGAGCGAGGGAAGACGTTTTCACGTGTGCTCGGCATCTGTACGTACACCCCAGGAA TACGGCGCCAGATGCTTCTGTCGGGAGTTTCAGTCATTCCACCGCCTTTGTCCAAGAATT TTTTCAGGCACGCGCATCTGACAGGTTTTTCGCCATTTAGCTCTTCGTGTCGTCGTCTCT TTGCACAGAATGAAAGTGATGTTGCGCCCTTTGTCTGCCGTATCCCAAATCAATCCGTCG CACCGGGCGACACGCAGTGGTCTGTGTCGCCGGTGGGAGTTCACTGTGAGCACTGGCTCA AAACGAGGTGTTTTCCTGGTTTACCGGCGGCGGTTTTTGGCTCACATCAACAGGTCGAAG CCGCCTTGCTGCAGAGAGGCCTTTCCCCTGCAAAGGATGCGTCAGAACGAGTCCGCAGCG CGACTGGCGAAGATCTGGTCCGTCGGGAGAGGCCGACTTCAGAGGCTGGCTCTCATCCCC CGCTTCCGTCTCGATCGTCCGTATCTGCTTTTCAGCTGAGATCTCGTTGCGATCCTGCGG TGTCAGGTCCGAGTGATTCGGCCCCCTGTGGCTTGTCGCAGACTTCTTTCTCTCTTCGCT CTTCGTCGTCTTCGGGCGCCACAACTCCCTTTTCTGTGCCAGCGGTTTGCCCCGTCTTTC TGTGTCGGTCTCTGCCTCGCCTGTCCGGTCGTTTCTCGAGAACGCGATTTGGAAAACAGA GGAAGCGAACCGAGGAACAAGAAGACTCGAAGGACTTTGACACCGGCCCTCTCTCGTCTG GTTCCATCTTTACAGTCCTTGTAGGCTCTCTGCTCTTCTTCGACGTTCTGCGGAGTGGTC TGTACGAACATCGGAAGCTTCTCGGAGCGTTCTTGATGACCAACGCCGCTGTCTTCACCG GCTGGCGGCTCGCCGCTACGGCAGGGAATGGAACGTGGTGGACTTTCTTGATGCGCCACT TTGTGCTCTGTCGCGAGAACCTCGCAAGCGCGCGCATTTATACTTTCGTCACGTCCTCGT TGAGCCACAAGAGCACAGGCCACTTGATTTTCAACTTGTTCGTGATCAACCAGCTGTTTC GTCTCCTCTCCTTCGACCTCTCCGACCGGGACTTTGCGTCTCTCTTCGGCCTGGCGGCTC TCTGTGGGGGCTTGGGCCATCTTTTGGTCTCCCGGCAGCCCGTCCTCGGCGCCTCGGCCT TCGCCTATGCCCTTTTGTGGACTGAAGCGACTCGCCACTCAAGGGAAATGTTTCGAATTC TTCCGATTCCCTTTTTTCCGCTCACGGCGCTGCAGCTCGTGCAGGTGGCGATGTGCCTCG AGGCGGCGATGGCCTTTCTCGCGAGACCGGCTTTTCTCGCGCGTTTCCCAGCCTCGCGGC TTCTGCGCTTTGCCCAAGGCATCTCCTGGTCTGGGCACCTGGGCGGCCTTGCCGCCGGCT GTCTCTACAGTTGGTACAAGCGGCGCGTGGAGGGCGACCGATCGTGGCAGAGCTTCTGGG AGCTGTGCAGAACTTACGGAACGTCGGACTGGCGTTTCACCTGGCAAGATCTGAAGGCGT CCACAACGATTTTCCTCCTCGAGTGCAAAGTTATGTTGGCGTCGACGGACAAGGAACGCA GAGTCCTCATCATGCGCCTCGACAAGTTGAGACGAGAGAAGCAGCTGAGGCGCCAGGCAG TTTCCCTAGGCGGGATTTTCCATTAATTGTTTTTTCAATTTTCCCCCCAGGATCTGAGCG AGAGACTCAAATGCATGCACCTGTCGAAACTCATGCTGGATCACCGCGCACTTGGTGATG TATTTATATATATATATATATTTATATATATGTATATGTAGAGTTTGTCTTTCAACTCTG GTGCGTACGATTCCAAGCATGGTGTATATATGCATACTTACATGCATGCGTTTATGGGTG TGTGCTTTGGTGGGGTTCCAAGAAAATGGGGATGGCAGTGCGAATGAAGAAAAGAAAGAA GATGAGGGAGAGGAGCGGGGGCACGATCCGCACAGGGAAGAGAAAGCGCGGAGGCAAGGC AACAGTGGGCGCCGAGGACCGGAGAACGGAGGAGTGCAGGAAGAGAAACGGAGCAAGGGA AGAGGAAAGTAGAGGATGCTTCTGGCGACAAGAGAAGACGAGGAGTGATCGATCAGCTGC CTTCAGCAATCCATGCGGCGTTGGAGAGTGGGCGTCCTCATCTCTGACCGGGGATGAGTC AAAAGCTTCTTCTGGCGAGGTGGAAAGCTGGTTGAGATCTTGAAGGTCAGAACGCGGGAG ACGATGGGAAGGCCGAAGTCGAAGGAGAGTCGGAAGCAGTGCTAATGAAGAACGAGTCGG ATACCCGAGGACATGTGGAGGAACAGGACAGCCAGCGGCGCGTCAAACTCTCTCGTGAAG GAGTCTTGTAGTGCCCTTCGACAGTGACCTGTCTATCGCCTGCGCAGACACGAAAGGAGT AGTTAACGATATATTTATACACTTATATATACATATGTACCTATATATATCATCATATAT AGATCTACATACCTCTGTGTCTACATGTCCTTGTGTATAAATACATAATTGGATTCATAT GTCTCCTTAGCTGCAAGTGTATATAGCCATGTAATGGCGTCACTCGCAGCCGGTGACCCG CCCGTTCTTCGAATCTGTGTATTCTTGACTGCGAGGTCAGAGTAGAGAGCTTTTCGATCG TCTTTCTCGCTTGGGCAATTCTGAGTCTTTTAAAGTGCACCACTGAGGCTGCATGCATGC TGTTGTTGACTCACAGCTGCGTGGACGTGAGAGAGAGAGAGCGCGTAAACGACAGACGAC GTACTCTCGAGGGCCGGGTCGACGCCCGTTTCGCCTTTCCAGGAGATTAAATTTTACGTC GTGCCTGCCTGGAAGTGACTTCTGTGGTTCACATGGAACGGAGCGTTTAAAAAAACCAAG TGCGCCTGGAGAACCAGTGCATGCGCTGTGCTTTTCTCCTCGCCAGAACAGCCGCGCACA GGAAATTCATTCAGTGTCGC
  • Download Fasta

  • Fasta :-

    MKKSAGPFIASWRPFVGLPVSLERGKTFSRVLGICTYTPGIRRQMLLSGVSVIPPPLSKN FFRHAHLTGFSPFSSSCRRLFAQNESDVAPFVCRIPNQSVAPGDTQWSVSPVGVHCEHWL KTRCFPGLPAAVFGSHQQVEAALLQRGLSPAKDASERVRSATGEDLVRRERPTSEAGSHP PLPSRSSVSAFQLRSRCDPAVSGPSDSAPCGLSQTSFSLRSSSSSGATTPFSVPAVCPVF LCRSLPRLSGRFSRTRFGKQRKRTEEQEDSKDFDTGPLSSGSIFTVLVGSLLFFDVLRSG LYEHRKLLGAFLMTNAAVFTGWRLAATAGNGTWWTFLMRHFVLCRENLASARIYTFVTSS LSHKSTGHLIFNLFVINQLFRLLSFDLSDRDFASLFGLAALCGGLGHLLVSRQPVLGASA FAYALLWTEATRHSREMFRILPIPFFPLTALQLVQVAMCLEAAMAFLARPAFLARFPASR LLRFAQGISWSGHLGGLAAGCLYSWYKRRVEGDRSWQSFWELCRTYGTSDWRFTWQDLKA STTIFLLECKVMLASTDKERRVLIMRLDKLRREKQLRRQAVSLGGIFH

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_245590222 SSLRSSSSSG0.993unspTGME49_245590222 SSLRSSSSSG0.993unspTGME49_245590222 SSLRSSSSSG0.993unspTGME49_245590223 SLRSSSSSGA0.991unspTGME49_245590249 SLPRLSGRFS0.996unspTGME49_245590362 STSSLSHKST0.994unspTGME49_245590388 SSFDLSDRDF0.991unspTGME49_245590434 SATRHSREMF0.997unspTGME49_245590160 SERVRSATGE0.993unspTGME49_245590174 SERPTSEAGS0.995unsp

TGME49_045590      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India