TGME49_254120 | autophagy-related protein 8 atg8, putative

  • Computed_GO_Component_IDs:  GO:0005737      

  • Computed_GO_Components:  cytoplasm      

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:  GO:0000045      

  • Computed_GO_Processes:  autophagosome assembly      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TGME49_254120OTHER0.9970630.0004250.002513
No Results

  • Fasta :-

    >TGME49_254120 MPSIRDEVSFEKRTAEAHRIRAKYPNRIPVICEKAPRSDLPVIDKKKFLVPMNMLVGEFK YIIHKHINQCAQNSGLPLTHEKTIYLFVENTAPKAGALMQEVYEQHVSDDGFLYVEYSSE NTLG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_254120.fa Sequence name : TGME49_254120 Sequence length : 124 VALUES OF COMPUTED PARAMETERS Coef20 : 4.033 CoefTot : -0.006 ChDiff : 0 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.382 1.000 -0.233 0.489 MesoH : -0.939 -0.014 -0.592 0.155 MuHd_075 : 24.678 12.459 7.413 2.144 MuHd_095 : 14.272 9.361 2.333 4.347 MuHd_100 : 21.350 12.038 3.805 5.486 MuHd_105 : 24.602 14.845 5.036 5.972 Hmax_075 : -2.100 3.617 -1.500 0.572 Hmax_095 : -11.500 1.500 -5.233 1.060 Hmax_100 : -8.700 2.200 -4.978 1.880 Hmax_105 : 2.333 4.783 -1.142 2.625 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7763 0.2237 DFMC : 0.8401 0.1599
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 124 TGME49_254120 MPSIRDEVSFEKRTAEAHRIRAKYPNRIPVICEKAPRSDLPVIDKKKFLVPMNMLVGEFKYIIHKHINQCAQNSGLPLTH 80 EKTIYLFVENTAPKAGALMQEVYEQHVSDDGFLYVEYSSENTLG 160 ................................................................................ 80 ............................................ 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_254120 5 --MPSIR|DE 0.094 . TGME49_254120 12 DEVSFEK|RT 0.058 . TGME49_254120 13 EVSFEKR|TA 0.318 . TGME49_254120 19 RTAEAHR|IR 0.088 . TGME49_254120 21 AEAHRIR|AK 0.102 . TGME49_254120 23 AHRIRAK|YP 0.074 . TGME49_254120 27 RAKYPNR|IP 0.086 . TGME49_254120 34 IPVICEK|AP 0.064 . TGME49_254120 37 ICEKAPR|SD 0.123 . TGME49_254120 45 DLPVIDK|KK 0.059 . TGME49_254120 46 LPVIDKK|KF 0.087 . TGME49_254120 47 PVIDKKK|FL 0.110 . TGME49_254120 60 MLVGEFK|YI 0.077 . TGME49_254120 65 FKYIIHK|HI 0.068 . TGME49_254120 82 LPLTHEK|TI 0.063 . TGME49_254120 94 VENTAPK|AG 0.061 . ____________________________^_________________

  • Fasta :-

    >TGME49_254120 ATGTTTTTGCCCTGCGGCATCGATAAGGTTCCTTGAGCTGCTTTTCTTTTTTTTATGACG TCTCCAGTTCGCCGCCTGGCTCAGATTTCCTTTGCATCCAATCTCGGAATTAAGTTCGTC CATTTTTCAGTAGGCAACCTTCCAAGTTCCAGTCCTGTAGAGCGCGTAGTTCGCCAGCAA GCACTCGTTCGTCACTTCGGCGCGATTTGTCCTCGCAACCTTTTTTGCCGACGTAACTCC GTTGACTGTTTCCTTTGTTTTTGAGTCGGCCACTCTGCATTGTCAGCGATTGTTTGTCTC TTTGTGACAGTTTCGCAGCCATCTTGCCATGCTCTCGACACAGACAAGGTCCCGCGCTGT CTTCGCTCGCTAGGAAGGTCAAAGCGACGAATTCCTTTTCAGCAGGAAACACAACTGTCG CATGCACGCTATCCCCGGAGGACGGTTTTGCTCGTTGACAAGAAACTGTCTGCCAGTAGC TCCACTCTTCTTTCGCTGACCGCATTTGGCCAACTGCTATTTTCCGTCCTATATATCGTC GGTTCGCGAACGTGAAAACCCACCAAACCAGATATTCGCCGTCTTGAAAAACATGCCATC GATTCGCGACGAAGTGTCCTTCGAAAAGAGGACAGCGGAGGCACACCGCATTCGGGCAAA GTATCCCAACCGAATTCCGGTCATCTGCGAAAAAGCTCCCCGGTCGGACCTGCCAGTGAT TGACAAGAAGAAGTTCCTCGTGCCGATGAACATGCTTGTCGGAGAGTTCAAGTACATCAT CCACAAACACATCAACCAGTGCGCACAGAACAGCGGCTTGCCGCTGACTCACGAGAAAAC GATTTATTTGTTTGTTGAAAATACGGCACCGAAGGCGGGTGCCTTGATGCAGGAAGTGTA TGAGCAGCACGTGTCTGATGACGGCTTTCTGTACGTGGAATACTCTTCAGAGAACACTCT GGGGTAAGGGAGTGTCGCGGCCGGCGTTGCGGCAAAAAAACAGACAGGAAGAGGAGACAG GCGCTTTTCTTTCTGCCCATCGTTTTTGGCTCACACGCGGTACAGGGAAAATGCTCAAAA AGGGTCGATGTGCAGCTGCTTTTTGGCTGTGCCTACCAGAGCGCGAAGGCGCGTCGCTCG TTTCTGCAGCCTCCATGGGAAAGGTTTCTGAGTGAAGCCTATTTGTTTTTGGGACTTAAA GGGAAGATGGAAAATATGTTTGGCCAGACTAAGAGTGACAGTGGGAACCTGCGAACTTTC GTGTCGTTTTTCTTCTCGCAAACGTCAGAGAAACGCGAGGAATGCATCGAATGGCAGAGG TTGCACTTCTTCAGCCGTTTTGTGCGCTGTCGGACTTTTTTCCGCTATTGCGTTCTACCT CGAAAAAACGGCTAGGGCGCTGAGTTACTGTGCAACAAACTGTAGAGAAAAACATCATGT GACATCGCACTCTTCCGC
  • Download Fasta

  • Fasta :-

    MPSIRDEVSFEKRTAEAHRIRAKYPNRIPVICEKAPRSDLPVIDKKKFLVPMNMLVGEFK YIIHKHINQCAQNSGLPLTHEKTIYLFVENTAPKAGALMQEVYEQHVSDDGFLYVEYSSE NTLG

    No Results
  • title: Atg7 interaction site
  • coordinates: R27,K45,F48,G57,E58,K60,Y61,I62,H64,K65,H66,E81,T83,I84,Y85,F87,N90,T91,K94,A95,G96
No Results
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TGME49_054120      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India