TGME49_258150 | proteasome subunit alpha type 7, putative

_IDPredictionOTHERSPmTPCS_Position
TGME49_258150OTHER0.9999640.0000230.000014
No Results

  • Fasta :-

    >TGME49_258150 MSYDRAITVFSPDGHLLQVEYAMEAVRRGGCAVGVMGKDLVVLAVEKKAAARLQEPRTAR KVVMLDENLCLAFAGLHADARVLINKTRVECQSYRLNTATAPSVDYISKFIAQVQQKYTH RGGVRPFGLSCLIAGAEHDGSIALYQTEPSGICAKWKAQAMGKNYRTVQEYLEKNYAPDL DEDGAVHLAVGALMEVVEAGHRHIEVAVVKKEQFYFLDEDRLEKEAQRVESLKNSEEESK SSGSS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_258150.fa Sequence name : TGME49_258150 Sequence length : 245 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : -3 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.776 1.624 0.157 0.552 MesoH : -0.853 0.376 -0.415 0.127 MuHd_075 : 28.573 14.937 6.543 4.663 MuHd_095 : 12.129 9.750 3.119 2.812 MuHd_100 : 14.109 14.515 5.303 4.707 MuHd_105 : 15.524 17.553 6.307 6.098 Hmax_075 : 12.862 11.025 1.795 4.043 Hmax_095 : 7.000 6.037 0.113 3.526 Hmax_100 : 7.400 12.100 0.248 4.210 Hmax_105 : 3.600 11.600 -0.028 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9718 0.0282 DFMC : 0.9727 0.0273
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 245 TGME49_258150 MSYDRAITVFSPDGHLLQVEYAMEAVRRGGCAVGVMGKDLVVLAVEKKAAARLQEPRTARKVVMLDENLCLAFAGLHADA 80 RVLINKTRVECQSYRLNTATAPSVDYISKFIAQVQQKYTHRGGVRPFGLSCLIAGAEHDGSIALYQTEPSGICAKWKAQA 160 MGKNYRTVQEYLEKNYAPDLDEDGAVHLAVGALMEVVEAGHRHIEVAVVKKEQFYFLDEDRLEKEAQRVESLKNSEEESK 240 SSGSS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_258150 5 --MSYDR|AI 0.082 . TGME49_258150 27 YAMEAVR|RG 0.094 . TGME49_258150 28 AMEAVRR|GG 0.206 . TGME49_258150 38 AVGVMGK|DL 0.064 . TGME49_258150 47 VVLAVEK|KA 0.060 . TGME49_258150 48 VLAVEKK|AA 0.113 . TGME49_258150 52 EKKAAAR|LQ 0.084 . TGME49_258150 57 ARLQEPR|TA 0.126 . TGME49_258150 60 QEPRTAR|KV 0.302 . TGME49_258150 61 EPRTARK|VV 0.100 . TGME49_258150 81 GLHADAR|VL 0.102 . TGME49_258150 86 ARVLINK|TR 0.058 . TGME49_258150 88 VLINKTR|VE 0.087 . TGME49_258150 95 VECQSYR|LN 0.085 . TGME49_258150 109 SVDYISK|FI 0.076 . TGME49_258150 117 IAQVQQK|YT 0.096 . TGME49_258150 121 QQKYTHR|GG 0.079 . TGME49_258150 125 THRGGVR|PF 0.091 . TGME49_258150 155 PSGICAK|WK 0.071 . TGME49_258150 157 GICAKWK|AQ 0.075 . TGME49_258150 163 KAQAMGK|NY 0.072 . TGME49_258150 166 AMGKNYR|TV 0.126 . TGME49_258150 174 VQEYLEK|NY 0.060 . TGME49_258150 202 VVEAGHR|HI 0.078 . TGME49_258150 210 IEVAVVK|KE 0.059 . TGME49_258150 211 EVAVVKK|EQ 0.099 . TGME49_258150 221 YFLDEDR|LE 0.071 . TGME49_258150 224 DEDRLEK|EA 0.122 . TGME49_258150 228 LEKEAQR|VE 0.071 . TGME49_258150 233 QRVESLK|NS 0.073 . TGME49_258150 240 NSEEESK|SS 0.088 . ____________________________^_________________

  • Fasta :-

    >TGME49_258150 ACCATACACACTGCGTGCTGTCCCGCGAAATTCTGTCGTCCTTTGCGAGAACACCGTGAC TCCTCTGAGGCCAGTCTGAATCTCTGTCTGCTCTGCGGCCGTTGAGAGACCCCTCAACTG GTGTGGTTGTCTTGCTGCACCCTTCCTGTTTCTTCGTTTTTCTCCACGACCTCTGTCCCG ACCTTCTGCCTGTCTCAGACTCGCTGTTTCCACATCTCTGCGCGCATTTTCTGGAGAAAA AGGGCTCAGCAAAGAACTCCATCGCCGCCTGTCTCGCGAACGCAGCAGGAGAGAGTCCTC GTTCTCCTCCGTTTCCTGCTCGCGGCTATCCCGACCTACGGCCTCTCTTCTCGTCTCTGT CTTCTCGCGTGGTTCGCTGCCTCGCTCTCTTTGTCGACACACTTGTGGAAAACCGCGAGG ATCTTCTGCTCAAACGTCTTCCAGCTCGCTCTCCACGCGTCTTGTCTGGACATGGAGCTC TTCTGAAGACGGACAGCTACCTCCGTTCGCCAGCCAAACTTCCAAATTTTCTCTTCTGAA GCGAAGCTCTCTCGGGTGCGCCTCTCTCGCTCGGTGTCGCGACAGCTGAGCTCTGGAGGG AGTCGAGAGACGTCGTCTTCGAGCTCTTCTGCTCCGGTCTCAAACGTTTTCTCTCCTCGA CAGTCCACCGAGACAGGTCGTCTTCGGCGACGGAGAAACTCCGACGGCGACGGATCCTCT GTTTCTCGTGTGAACTCGAAGAAAACGACTTGAAAACGCTTTCACCCTCCCTCGCCACCA TGAGTTACGACCGCGCCATCACAGTCTTCTCCCCAGACGGGCACCTTCTCCAGGTCGAGT ACGCCATGGAGGCTGTTCGACGAGGAGGATGTGCCGTCGGAGTCATGGGGAAAGATCTTG TCGTCCTTGCAGTTGAAAAGAAAGCGGCAGCGAGACTTCAAGAGCCTCGGACTGCTCGGA AAGTCGTGATGCTCGACGAGAACCTCTGTCTCGCGTTTGCGGGGCTTCACGCAGACGCGC GGGTGTTGATCAACAAGACCAGGGTGGAGTGTCAGTCTTACCGCCTCAACACTGCGACGG CGCCTTCTGTCGACTACATCTCCAAGTTCATTGCACAAGTGCAGCAGAAATACACGCATC GCGGAGGAGTACGGCCCTTCGGACTCAGCTGCCTGATCGCGGGAGCGGAACACGATGGAT CGATTGCTCTCTATCAAACAGAGCCTTCTGGGATCTGTGCGAAGTGGAAGGCGCAAGCCA TGGGGAAGAACTACCGAACTGTCCAAGAGTACTTGGAAAAGAATTACGCACCGGATCTGG ATGAGGACGGCGCAGTTCACTTGGCCGTCGGCGCCCTCATGGAAGTTGTGGAGGCTGGAC ACCGCCACATCGAGGTAGCGGTTGTGAAAAAAGAACAGTTCTACTTCCTCGACGAGGACC GTCTCGAGAAAGAGGCTCAGCGCGTGGAGTCGCTGAAGAATTCGGAAGAGGAGAGCAAGA GCAGCGGTAGCTCGTAATTCTGTGCGTTTTTCCGAGTGTCAGTACGAACGTTTTCTTGCG TGGAAACAAGTTGAAAAGAGTTGCATGCCGCCGAGAAAAGGCGTTCTCGGTAGAAGTAAA AGAACGCCGACGGTGTTGCTGTGATGGCGTTCTTCGTGTTAGGAGACACGGAACTCGGGC GGACTCGAAAAGACTCAGAGATCTGGAAATTCAGAAAAATGCTCAGAAGCGGTGATGAGG AGATGCGCCGGCTAGCGAGGGCGACACAAGACTGCCTTTCTGAGAGCGCGAAAAACGCAC TTTTCCACGACTCGCTTTCAGACGACTTCGCCCCGTAAATGAACGATTCGTTTTCTGTTT GAGAGGCTGGATTTCCGTCCAGTTTTTTTGAATTCGTTTCCTATACTGCTCCCTGTCTCT CCGATTTACAAGTGTGTGAACATG
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  • Fasta :-

    MSYDRAITVFSPDGHLLQVEYAMEAVRRGGCAVGVMGKDLVVLAVEKKAAARLQEPRTAR KVVMLDENLCLAFAGLHADARVLINKTRVECQSYRLNTATAPSVDYISKFIAQVQQKYTH RGGVRPFGLSCLIAGAEHDGSIALYQTEPSGICAKWKAQAMGKNYRTVQEYLEKNYAPDL DEDGAVHLAVGALMEVVEAGHRHIEVAVVKKEQFYFLDEDRLEKEAQRVESLKNSEEESK SSGSS

  • title: active site
  • coordinates: G30,E46,K48,K61,K163
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_258150231 SQRVESLKNS0.997unspTGME49_258150235 SSLKNSEEES0.997unsp

TGME49_058150      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India