TGME49_263290 | rhomboid protease ROM2

_IDPredictionOTHERSPmTPCS_Position
TGME49_263290OTHER0.9999010.0000060.000093
No Results

  • Fasta :-

    >TGME49_263290 MANIRTLSDYASSPPRGSSALEGEGRQGGSPLPLFFPSGTQSGENVSWIQWLCPGIHLKS PIIIISFVQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH LNLFHILMNLWVQIRIGLTIEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTA VFALIGVQLAELALIWHAIQDRNSAIISVCICLFFVFVSSFGSQMDSVGHIGGLVMGFAA GIWLNENSDIKPTWYDRARLTSQVALAAAPILSCIFIFLVPRC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_263290.fa Sequence name : TGME49_263290 Sequence length : 283 VALUES OF COMPUTED PARAMETERS Coef20 : 4.174 CoefTot : 0.376 ChDiff : 0 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.476 2.718 0.643 0.871 MesoH : 0.986 1.471 0.085 0.536 MuHd_075 : 13.931 7.223 2.888 1.952 MuHd_095 : 25.722 11.054 5.215 5.761 MuHd_100 : 31.279 14.670 6.702 7.087 MuHd_105 : 33.328 17.329 7.492 7.663 Hmax_075 : 2.625 2.538 -1.237 0.880 Hmax_095 : 3.700 3.400 -0.816 2.400 Hmax_100 : 11.900 8.800 1.308 3.520 Hmax_105 : 12.300 9.200 1.587 4.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7803 0.2197 DFMC : 0.7836 0.2164
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 283 TGME49_263290 MANIRTLSDYASSPPRGSSALEGEGRQGGSPLPLFFPSGTQSGENVSWIQWLCPGIHLKSPIIIISFVQIAVYIASLAAG 80 LAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHILMNLWVQIRIGLTIEEKYGWKMLLAVYFGVGVLA 160 NMISAAVLFCGQMKAGASTAVFALIGVQLAELALIWHAIQDRNSAIISVCICLFFVFVSSFGSQMDSVGHIGGLVMGFAA 240 GIWLNENSDIKPTWYDRARLTSQVALAAAPILSCIFIFLVPRC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_263290 5 --MANIR|TL 0.100 . TGME49_263290 16 YASSPPR|GS 0.157 . TGME49_263290 26 ALEGEGR|QG 0.098 . TGME49_263290 59 CPGIHLK|SP 0.089 . TGME49_263290 106 NIPELIR|VG 0.064 . TGME49_263290 112 RVGEIWR|LI 0.085 . TGME49_263290 135 NLWVQIR|IG 0.081 . TGME49_263290 143 GLTIEEK|YG 0.064 . TGME49_263290 147 EEKYGWK|ML 0.063 . TGME49_263290 174 LFCGQMK|AG 0.058 . TGME49_263290 202 WHAIQDR|NS 0.082 . TGME49_263290 251 NENSDIK|PT 0.060 . TGME49_263290 257 KPTWYDR|AR 0.082 . TGME49_263290 259 TWYDRAR|LT 0.131 . TGME49_263290 282 FIFLVPR|C- 0.085 . ____________________________^_________________

  • Fasta :-

    >TGME49_263290 ACTCAATCGATTTTGTTTGGTTCTTGTCCTAGATCGCGTGAACCCGTGGATAACCACAAG AACGGCAAATTTGTGTTTCCCGTTCTCGAAAACCCATACACAACGAAATGCATGCCGGAG ACAGCTAGGCAACAAAACTGACTTGGAAAACCTGTGCTGGGAAGCTGTCTTCTTTCTTTC CCCTGCGCATCCATGACCGACTAGCACTTGGCGCTGCCAAGCGCGACATTTCCAGGCAAG AAAGCAGGTCCATCGTTAGAAGCTGGTTCAAGAAAAAAGAATCGGACATAGTTTTCGCAT GTATCGATCTGGTTTTCAACGGCTTTCGCAAAACGCCTGTTGTACCCGCTCTGCCACCCG TGTGTCTTTCAACCTGGGACCGCCTAGTCGCCGTTTCCCGTTTTGTTTGATTCAGCAGTG CCATTCCCTGCCTTTCGCATGGGATATCGCAAGCTGTCCATCCTGGGCTGTTGCGTTTTC CCATGGAACGAACCAGAAACGCACTTCCCTTTCCCTTCTTCTTTGTCGGAAGGAACGATT TTTGTCTTCTTTCTAGCGGTTCAAAGGCCGACGCTGCTGCTACGCGCTGCACAGCGGGAA CACGATGGCCAACATTCGGACGTTGTCGGATTATGCGTCGTCGCCTCCACGCGGCTCTTC TGCACTTGAAGGGGAAGGACGACAGGGAGGAAGTCCGTTGCCACTCTTTTTCCCCTCTGG AACTCAATCTGGCGAAAACGTCAGTTGGATTCAATGGCTGTGCCCGGGAATACACCTGAA GAGCCCAATCATCATCATTTCCTTCGTACAAATCGCAGTCTACATCGCGTCGCTCGCTGC CGGCCTGGCACCCAATGAAATCCTGGCACCAACTCCGCAAACCCTGGTGATGTTCGGCGC AAACATTCCCGAGCTCATTCGTGTCGGCGAAATCTGGAGACTAATCTGTCCTCTGTTTCT CCACTTGAATCTGTTCCACATCTTGATGAATCTCTGGGTGCAGATCCGGATCGGCCTGAC GATTGAGGAGAAGTACGGATGGAAGATGCTGCTTGCGGTTTACTTTGGAGTCGGGGTCTT GGCGAACATGATCTCCGCAGCCGTCCTGTTTTGTGGCCAGATGAAAGCAGGCGCATCGAC TGCCGTCTTCGCTCTCATCGGTGTCCAGCTCGCCGAGCTCGCCCTTATCTGGCACGCGAT CCAAGATCGCAACAGTGCTATCATTAGCGTTTGCATTTGCCTCTTCTTTGTCTTCGTCTC GTCCTTTGGAAGCCAGATGGACAGCGTCGGCCACATCGGCGGGCTGGTGATGGGATTCGC CGCAGGTATCTGGTTGAACGAAAACAGCGATATCAAGCCAACGTGGTACGACAGGGCCCG TTTAACGTCGCAAGTGGCGTTAGCTGCTGCGCCGATCTTGAGTTGCATCTTTATCTTCCT GGTCCCTCGCTGCTGACTGCGGACACAGGGTCTGCACGTGCTTTCAAAGATTACCTCAGG CAAGCGCATTCGAAGTTATGCGAAA
  • Download Fasta

  • Fasta :-

    MANIRTLSDYASSPPRGSSALEGEGRQGGSPLPLFFPSGTQSGENVSWIQWLCPGIHLKS PIIIISFVQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH LNLFHILMNLWVQIRIGLTIEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTA VFALIGVQLAELALIWHAIQDRNSAIISVCICLFFVFVSSFGSQMDSVGHIGGLVMGFAA GIWLNENSDIKPTWYDRARLTSQVALAAAPILSCIFIFLVPRC

    No Results
No Results
No Results
IDSitePeptideScoreMethod
TGME49_26329019 SPRGSSALEG0.992unsp

TGME49_063290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India