TGME49_268590 | rhomboid protease ROM4

_IDPredictionOTHERSPmTPCS_Position
TGME49_268590OTHER0.8474270.1517020.000871
No Results

  • Fasta :-

    >TGME49_268590 MHEASEGEIYFPVLVLTLRVVLVQVWTSAVVMASPHGSASRAGSNRRTDGLSVNLGQDNT LKHDTPTETAPSASPPRVAPAPIPPKGGPAATPGKDGALDNRGSHDSVPPVAVAIPGREE VNATASQKSVVAGANSQPTPGTQSSKAPASDVDGSSKHGSPEHPDAGSPEVNAEGVPVEE ALQAIGDDDPLIHNLPDGVVGRRAPANPFNSPMYAKLRGKKKKHRPKVRDPKLNNNPLRG RLVVCISTTALLCWIYMWELIYNFTSFNGRCVSPVMYPDYKLQEAKQRQPYVIRYGYGGC EYNLGSLAYPRASFGTSAGDKGWPVDLVPNGSAGSAATSWDSPNARVLRHLGGLETNYIR EYSETFRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFLRTTLLFFLGGISGNLLSA VADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVVIIGILTGMAGFTD NYAHMGGALGGILWGFASITTVSACDKCTLGERMAMTPPFSWCVPKATQQKLLERAKARK AEAIRRRKLQAIQKKKAGGARGKAMYAVKMRLQEEGRPPCKMSFREWVIRGLCAAALFAY WLILFLYLLDPSLYKSYSPPGQLKFSGWLYCKCGTIVYQAPQTYGNLGRFWCFGSEKDAQ YYLEP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_268590.fa Sequence name : TGME49_268590 Sequence length : 665 VALUES OF COMPUTED PARAMETERS Coef20 : 3.745 CoefTot : -0.239 ChDiff : 18 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.659 3.094 0.682 0.999 MesoH : 1.105 1.342 0.169 0.553 MuHd_075 : 16.101 15.429 6.121 2.821 MuHd_095 : 9.651 5.245 2.909 1.017 MuHd_100 : 12.657 8.933 3.544 2.264 MuHd_105 : 16.015 9.308 3.838 2.534 Hmax_075 : 15.750 20.183 3.600 5.997 Hmax_095 : 9.188 12.500 0.379 4.860 Hmax_100 : 9.300 12.500 0.379 4.860 Hmax_105 : 16.500 13.000 2.153 5.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9955 0.0045 DFMC : 0.9967 0.0033
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 665 TGME49_268590 MHEASEGEIYFPVLVLTLRVVLVQVWTSAVVMASPHGSASRAGSNRRTDGLSVNLGQDNTLKHDTPTETAPSASPPRVAP 80 APIPPKGGPAATPGKDGALDNRGSHDSVPPVAVAIPGREEVNATASQKSVVAGANSQPTPGTQSSKAPASDVDGSSKHGS 160 PEHPDAGSPEVNAEGVPVEEALQAIGDDDPLIHNLPDGVVGRRAPANPFNSPMYAKLRGKKKKHRPKVRDPKLNNNPLRG 240 RLVVCISTTALLCWIYMWELIYNFTSFNGRCVSPVMYPDYKLQEAKQRQPYVIRYGYGGCEYNLGSLAYPRASFGTSAGD 320 KGWPVDLVPNGSAGSAATSWDSPNARVLRHLGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWG 400 FLRTTLLFFLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVVIIGILTGMAGFTD 480 NYAHMGGALGGILWGFASITTVSACDKCTLGERMAMTPPFSWCVPKATQQKLLERAKARKAEAIRRRKLQAIQKKKAGGA 560 RGKAMYAVKMRLQEEGRPPCKMSFREWVIRGLCAAALFAYWLILFLYLLDPSLYKSYSPPGQLKFSGWLYCKCGTIVYQA 640 PQTYGNLGRFWCFGSEKDAQYYLEP 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ......................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_268590 19 VLVLTLR|VV 0.089 . TGME49_268590 41 PHGSASR|AG 0.089 . TGME49_268590 46 SRAGSNR|RT 0.124 . TGME49_268590 47 RAGSNRR|TD 0.139 . TGME49_268590 62 GQDNTLK|HD 0.070 . TGME49_268590 77 PSASPPR|VA 0.096 . TGME49_268590 86 PAPIPPK|GG 0.065 . TGME49_268590 95 PAATPGK|DG 0.064 . TGME49_268590 102 DGALDNR|GS 0.108 . TGME49_268590 118 AVAIPGR|EE 0.082 . TGME49_268590 128 NATASQK|SV 0.119 . TGME49_268590 146 PGTQSSK|AP 0.061 . TGME49_268590 157 DVDGSSK|HG 0.066 . TGME49_268590 202 PDGVVGR|RA 0.114 . TGME49_268590 203 DGVVGRR|AP 0.092 . TGME49_268590 216 NSPMYAK|LR 0.072 . TGME49_268590 218 PMYAKLR|GK 0.099 . TGME49_268590 220 YAKLRGK|KK 0.057 . TGME49_268590 221 AKLRGKK|KK 0.158 . TGME49_268590 222 KLRGKKK|KH 0.130 . TGME49_268590 223 LRGKKKK|HR 0.189 . TGME49_268590 225 GKKKKHR|PK 0.092 . TGME49_268590 227 KKKHRPK|VR 0.078 . TGME49_268590 229 KHRPKVR|DP 0.105 . TGME49_268590 232 PKVRDPK|LN 0.113 . TGME49_268590 239 LNNNPLR|GR 0.108 . TGME49_268590 241 NNPLRGR|LV 0.090 . TGME49_268590 270 FTSFNGR|CV 0.168 . TGME49_268590 281 VMYPDYK|LQ 0.068 . TGME49_268590 286 YKLQEAK|QR 0.062 . TGME49_268590 288 LQEAKQR|QP 0.104 . TGME49_268590 294 RQPYVIR|YG 0.089 . TGME49_268590 311 GSLAYPR|AS 0.080 . TGME49_268590 321 GTSAGDK|GW 0.066 . TGME49_268590 346 WDSPNAR|VL 0.121 . TGME49_268590 349 PNARVLR|HL 0.481 . TGME49_268590 360 LETNYIR|EY 0.082 . TGME49_268590 367 EYSETFR|LF 0.091 . TGME49_268590 403 PDWGFLR|TT 0.069 . TGME49_268590 451 YCVEYWK|SI 0.072 . TGME49_268590 455 YWKSIPR|PG 0.083 . TGME49_268590 507 TVSACDK|CT 0.079 . TGME49_268590 513 KCTLGER|MA 0.080 . TGME49_268590 526 FSWCVPK|AT 0.087 . TGME49_268590 531 PKATQQK|LL 0.069 . TGME49_268590 535 QQKLLER|AK 0.079 . TGME49_268590 537 KLLERAK|AR 0.060 . TGME49_268590 539 LERAKAR|KA 0.208 . TGME49_268590 540 ERAKARK|AE 0.087 . TGME49_268590 545 RKAEAIR|RR 0.071 . TGME49_268590 546 KAEAIRR|RK 0.110 . TGME49_268590 547 AEAIRRR|KL 0.181 . TGME49_268590 548 EAIRRRK|LQ 0.138 . TGME49_268590 554 KLQAIQK|KK 0.064 . TGME49_268590 555 LQAIQKK|KA 0.197 . TGME49_268590 556 QAIQKKK|AG 0.141 . TGME49_268590 561 KKAGGAR|GK 0.103 . TGME49_268590 563 AGGARGK|AM 0.070 . TGME49_268590 569 KAMYAVK|MR 0.068 . TGME49_268590 571 MYAVKMR|LQ 0.125 . TGME49_268590 577 RLQEEGR|PP 0.081 . TGME49_268590 581 EGRPPCK|MS 0.064 . TGME49_268590 585 PCKMSFR|EW 0.088 . TGME49_268590 590 FREWVIR|GL 0.125 . TGME49_268590 615 LDPSLYK|SY 0.073 . TGME49_268590 624 SPPGQLK|FS 0.072 . TGME49_268590 632 SGWLYCK|CG 0.059 . TGME49_268590 649 TYGNLGR|FW 0.106 . TGME49_268590 657 WCFGSEK|DA 0.076 . ____________________________^_________________

  • Fasta :-

    >TGME49_268590 ATGCATGAGGCTTCCGAGGGTGAAATTTATTTTCCCGTTCTTGTGTTGACACTGCGAGTG GTCTTGGTTCAGGTGTGGACTTCGGCCGTCGTGATGGCGTCCCCTCACGGATCCGCGTCT CGGGCTGGATCGAACAGACGAACCGACGGCCTCAGCGTTAACCTAGGGCAGGACAATACT CTCAAACACGACACCCCGACTGAGACGGCTCCGAGCGCGTCGCCACCTCGTGTGGCACCC GCACCCATCCCGCCCAAGGGTGGACCTGCTGCCACTCCGGGTAAAGATGGAGCACTTGAC AACAGGGGTTCACACGACAGTGTTCCGCCCGTTGCCGTTGCGATCCCAGGGAGAGAGGAG GTGAACGCTACCGCAAGCCAAAAGTCGGTGGTCGCTGGGGCGAACAGCCAGCCAACCCCA GGCACTCAATCTTCGAAAGCTCCCGCCTCAGACGTTGATGGCTCCAGCAAGCATGGCTCG CCTGAACATCCAGACGCCGGTTCGCCTGAGGTGAATGCCGAAGGCGTTCCAGTGGAGGAG GCTCTTCAGGCAATTGGTGACGATGACCCGTTGATCCACAACTTACCAGACGGAGTGGTC GGGCGTCGAGCACCGGCAAACCCTTTCAACTCGCCGATGTATGCAAAGTTGAGAGGAAAG AAGAAGAAGCACCGACCCAAGGTTCGGGATCCGAAGCTGAACAACAACCCTCTCAGAGGA CGGCTTGTTGTGTGCATCAGCACGACCGCGCTTCTTTGCTGGATCTACATGTGGGAGTTG ATCTATAACTTCACGAGCTTCAACGGTCGCTGCGTGAGCCCGGTTATGTACCCTGACTAC AAGCTGCAAGAGGCGAAACAGCGACAGCCTTACGTCATTCGCTATGGATATGGAGGCTGC GAATACAACCTAGGATCTTTGGCGTACCCCCGTGCCTCCTTCGGAACATCCGCTGGTGAC AAGGGGTGGCCAGTGGACCTCGTTCCCAACGGCAGTGCTGGATCTGCCGCGACGAGCTGG GACTCTCCGAACGCTCGCGTTCTGCGTCATTTGGGAGGTCTGGAAACGAACTACATTCGC GAGTACAGCGAGACGTTCAGGCTGTTCACGTCCATGTACATGCACGGAGGCTGGCTGCAC ATTCTTATCAACCTTTCTTGCCAGATTCAAATTCTGTGGATCATCGAACCAGATTGGGGC TTCCTGAGAACCACACTGCTGTTCTTCCTAGGAGGCATTTCAGGAAATCTCCTCTCAGCT GTTGCGGATCCTTGCAGCATTACAGTCGGATCGTCTGGTTCCATGTATGCTCTGCTGGGC GCTCTTATTCCGTATTGCGTTGAATACTGGAAATCAATCCCTCGACCGGGCTGCATTCTC GTCTTCATGATTGTCGTTGTGATAATAGGCATTTTGACAGGCATGGCAGGTTTCACGGAC AACTACGCTCACATGGGTGGTGCACTGGGTGGCATTTTGTGGGGTTTTGCGAGCATTACG ACAGTGTCGGCTTGCGACAAATGCACACTAGGTGAACGTATGGCGATGACCCCTCCGTTC AGTTGGTGTGTGCCGAAGGCTACTCAGCAGAAACTCCTGGAGAGGGCGAAGGCGAGAAAG GCGGAAGCTATCCGGAGGCGAAAGCTTCAAGCGATTCAAAAGAAAAAGGCAGGAGGCGCC CGCGGTAAGGCCATGTACGCGGTGAAGATGCGTCTCCAGGAAGAAGGTAGACCTCCTTGC AAGATGAGTTTCAGGGAATGGGTCATTCGTGGCCTCTGTGCAGCTGCCCTGTTCGCGTAC TGGTTGATTTTGTTCCTTTACCTGCTCGATCCCTCACTGTACAAGAGTTACTCTCCGCCG GGCCAGCTGAAGTTCAGTGGCTGGCTCTATTGCAAGTGTGGAACGATCGTATACCAGGCG CCACAGACATACGGCAACCTGGGGCGTTTCTGGTGCTTTGGAAGCGAGAAGGATGCGCAG TATTATCTTGAACCGTAA
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  • Fasta :-

    MHEASEGEIYFPVLVLTLRVVLVQVWTSAVVMASPHGSASRAGSNRRTDGLSVNLGQDNT LKHDTPTETAPSASPPRVAPAPIPPKGGPAATPGKDGALDNRGSHDSVPPVAVAIPGREE VNATASQKSVVAGANSQPTPGTQSSKAPASDVDGSSKHGSPEHPDAGSPEVNAEGVPVEE ALQAIGDDDPLIHNLPDGVVGRRAPANPFNSPMYAKLRGKKKKHRPKVRDPKLNNNPLRG RLVVCISTTALLCWIYMWELIYNFTSFNGRCVSPVMYPDYKLQEAKQRQPYVIRYGYGGC EYNLGSLAYPRASFGTSAGDKGWPVDLVPNGSAGSAATSWDSPNARVLRHLGGLETNYIR EYSETFRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFLRTTLLFFLGGISGNLLSA VADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVVIIGILTGMAGFTD NYAHMGGALGGILWGFASITTVSACDKCTLGERMAMTPPFSWCVPKATQQKLLERAKARK AEAIRRRKLQAIQKKKAGGARGKAMYAVKMRLQEEGRPPCKMSFREWVIRGLCAAALFAY WLILFLYLLDPSLYKSYSPPGQLKFSGWLYCKCGTIVYQAPQTYGNLGRFWCFGSEKDAQ YYLEP

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_268590160 SSKHGSPEHP0.996unspTGME49_268590160 SSKHGSPEHP0.996unspTGME49_268590160 SSKHGSPEHP0.996unspTGME49_26859044 SSRAGSNRRT0.997unspTGME49_268590150 SKAPASDVDG0.996unsp

TGME49_068590      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India