TGME49_278050 | proteasome subunit alpha type 1, putative

_IDPredictionOTHERSPmTPCS_Position
TGME49_278050OTHER0.9998860.0000580.000056
No Results

  • Fasta :-

    >TGME49_278050 MYRNLYDTDCITWSPQGRIFQVEYAMEAVKQGTCCVGLRSNTHVVLCSLKRAVSKFAGHH QKLFKIDDHVGVAMSGITADAKVISNFMRNECFHHKYVYDAPIPVGRLVLMVADKSQANT QRSGKRPFGVGLLAAGYDDAGPHLFETCPSGNYFESYAMAFGARSQSSKTYLERNFENFP GLSPEELELHAMKALQASLAADAELTADTVSMAIVGKNQPWKELSTDEVQSLLDKLNAES AGEDVQM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_278050.fa Sequence name : TGME49_278050 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 3.877 CoefTot : -0.191 ChDiff : -5 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.435 1.188 0.134 0.454 MesoH : -0.804 0.230 -0.436 0.140 MuHd_075 : 31.865 19.464 9.225 7.082 MuHd_095 : 25.976 6.637 3.085 5.428 MuHd_100 : 22.592 6.221 2.299 4.685 MuHd_105 : 13.052 7.542 1.582 2.351 Hmax_075 : 12.133 11.433 3.149 4.445 Hmax_095 : 0.438 0.700 -1.072 2.573 Hmax_100 : 6.700 3.700 -0.875 2.380 Hmax_105 : -1.500 -2.100 -2.547 1.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6556 0.3444 DFMC : 0.7551 0.2449
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 TGME49_278050 MYRNLYDTDCITWSPQGRIFQVEYAMEAVKQGTCCVGLRSNTHVVLCSLKRAVSKFAGHHQKLFKIDDHVGVAMSGITAD 80 AKVISNFMRNECFHHKYVYDAPIPVGRLVLMVADKSQANTQRSGKRPFGVGLLAAGYDDAGPHLFETCPSGNYFESYAMA 160 FGARSQSSKTYLERNFENFPGLSPEELELHAMKALQASLAADAELTADTVSMAIVGKNQPWKELSTDEVQSLLDKLNAES 240 AGEDVQM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_278050 3 ----MYR|NL 0.088 . TGME49_278050 18 TWSPQGR|IF 0.133 . TGME49_278050 30 YAMEAVK|QG 0.058 . TGME49_278050 39 TCCVGLR|SN 0.127 . TGME49_278050 50 VVLCSLK|RA 0.057 . TGME49_278050 51 VLCSLKR|AV 0.304 . TGME49_278050 55 LKRAVSK|FA 0.128 . TGME49_278050 62 FAGHHQK|LF 0.066 . TGME49_278050 65 HHQKLFK|ID 0.082 . TGME49_278050 82 GITADAK|VI 0.069 . TGME49_278050 89 VISNFMR|NE 0.101 . TGME49_278050 96 NECFHHK|YV 0.091 . TGME49_278050 107 APIPVGR|LV 0.117 . TGME49_278050 115 VLMVADK|SQ 0.074 . TGME49_278050 122 SQANTQR|SG 0.134 . TGME49_278050 125 NTQRSGK|RP 0.118 . TGME49_278050 126 TQRSGKR|PF 0.276 . TGME49_278050 164 AMAFGAR|SQ 0.138 . TGME49_278050 169 ARSQSSK|TY 0.071 . TGME49_278050 174 SKTYLER|NF 0.089 . TGME49_278050 193 LELHAMK|AL 0.072 . TGME49_278050 217 SMAIVGK|NQ 0.070 . TGME49_278050 222 GKNQPWK|EL 0.102 . TGME49_278050 235 VQSLLDK|LN 0.058 . ____________________________^_________________

  • Fasta :-

    >TGME49_278050 AAAGGAGCGTAGAGTTCGTCGTGACTTCTCAGCTTCTGTCTTCTTCAGAGAGAGCTTGTC CGTTTTGTTTCTCGATTTTCAGAGAGACGCGGGCAATTTCCGAGGAACGAATACGATGCC AAGGTTGTAGATATACACACGAAAAACACACACACAATTTAAAGAGGCAGGCAGCGACGA CAAAGAACCAACCCATTTCGGAGCTGTGTTTTCCTTGTCTCTTGTTGCGTTTTATTGTCT TTGTCTCCTCTCTCTGAAGTGAAAGAAAGCGCTCGCTTTCTCGTACCTTTGTGTCAAAAT CCTCTTTTTTTCTCTCGCTGCACCTCCTCCGTCCAAGGTTCGCCGCAACTTCTCGGTTTC GTCTCTCTGTGTCTCTTTTTATTCCATCGCGCTCCATTTCTCCCCTTTCTGCTTCTTTCT TGTGCGTCGGATTCCTTCTCCTCCATCGGCAGAACTCCTGCCTTCCTCGGACTTCTCTTC GTCGCTGCACCGCCAGTGCTGCGAGCTTCGCCAAGGGTGTACCGTGTCTTCCTCCTCCTC TGTTTTCACCCCTTTTTTCCGTCCGTTTCCCCTGCTTTTCCCCCCGTTTCCTGTCTTTTT TCCTTTTTCTTTTCGCCAGCATGTACCGCAATCTGTACGACACGGACTGCATCACTTGGA GCCCTCAGGGGCGGATTTTCCAAGTGGAATATGCGATGGAAGCGGTGAAGCAAGGCACCT GCTGCGTTGGACTGCGCTCCAATACACATGTGGTCCTTTGCTCGCTCAAGCGCGCGGTCT CGAAGTTCGCGGGCCATCACCAAAAACTCTTCAAAATCGACGATCACGTCGGCGTCGCCA TGTCGGGCATCACAGCAGATGCGAAGGTGATCAGTAACTTCATGCGCAACGAGTGCTTCC ACCACAAATACGTCTACGATGCTCCGATCCCCGTGGGCCGTCTCGTCCTCATGGTGGCAG ACAAGTCGCAAGCGAACACGCAGAGAAGTGGAAAGCGCCCATTCGGAGTCGGCCTCCTCG CTGCCGGTTACGACGACGCTGGTCCGCACCTCTTTGAAACTTGCCCCTCTGGAAACTACT TCGAGTCCTATGCAATGGCCTTCGGTGCACGGTCGCAGTCTTCGAAAACCTACTTGGAGC GAAACTTTGAAAACTTCCCTGGTCTCTCTCCCGAGGAACTCGAACTGCATGCAATGAAGG CTCTCCAGGCCTCCCTCGCTGCCGACGCTGAGCTGACAGCAGACACGGTCTCCATGGCCA TCGTGGGCAAGAATCAACCGTGGAAGGAACTGTCTACCGATGAAGTCCAGAGTCTCCTGG ACAAGCTGAATGCGGAGTCCGCTGGTGAAGACGTCCAGATGTGAGGCTGTGGAGAAGGAG AACGCGTGGGCTAGTGGACTGAAGGAGACTCCAAAATCGAGAAAGCTGAAGACCAATCCG TTTGAAAAAATCTCTCATTGCAGCAGGGTCCTTTGCGTCGCCCGTCCTTCCGAATCGAAA GTCGTGAAGCGAGTCTCTCACCGTTCGTGGGTGGCGTCTTTTGGTTTCTGTTTTGGACGT TTCGCGTGATGAGAATGAAGGCCGACATCTGTTTCCAGAGTCTCAGGCTGGCGTATCAGA ACACAAGTGCAGTGTTGCACCTTAAAAGAATACGCGCGCTGAACTGGGGCGCGGGTG
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  • Fasta :-

    MYRNLYDTDCITWSPQGRIFQVEYAMEAVKQGTCCVGLRSNTHVVLCSLKRAVSKFAGHH QKLFKIDDHVGVAMSGITADAKVISNFMRNECFHHKYVYDAPIPVGRLVLMVADKSQANT QRSGKRPFGVGLLAAGYDDAGPHLFETCPSGNYFESYAMAFGARSQSSKTYLERNFENFP GLSPEELELHAMKALQASLAADAELTADTVSMAIVGKNQPWKELSTDEVQSLLDKLNAES AGEDVQM

  • title: active site
  • coordinates: T33,L49,R51,K62,A163
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_278050123 SNTQRSGKRP0.996unspTGME49_278050183 SFPGLSPEEL0.995unsp

TGME49_078050      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India