TGME49_280720 | hypothetical protein

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TGME49_280720SP0.4650910.5306650.004244CS pos: 26-27. LHA-TP. Pr: 0.5331
No Results

  • Fasta :-

    >TGME49_280720 MRRTVSTPVLCASVCVVLVSVALLHATPVSSSCLFSRFPSRAVVESRVQSCLPGAGREVS RLLDSGVPASAPLRRLQPRDARLSRPFLTLPSSSSSSLLSSSLSPRVSSSRNRLLPAAWL SVLRGCMRAVSRTRTSEGQPFLLPLPFSTFLRLHFLTTLLSFTALGFNAFLSSRRLVLLP SLPRACLQLLNGNNQLHVFLRSVCTPDLPALQATVSGPFFEELQFRFLLQNCLLSPLLAA VGSSWLSVAAGPGCRRLSPVKLEDGETTVRRDGQGASSPSDATASSKENAESTHPEARKR RLGSVEGSSLREKLARVLRCARLVETRERFFRDVSGANSSEKDLRAGCQQQLLQERREGS SPRCRVEQTLRIAITSILFALAHYVPPSVASPVRRQFRRAVAKQRTRLGFPLEPSGAKRF SIGSVSSFSSPSVKQWSPRSAAQSAAPDAASFSSSTAFTSVPLAEEELFSVDSPQRRVED CVAANRILTAAVQGCVWSYAAEKGGFASALLLHILHNLQQFLLVAAFRTFVRRRQERLSD GRLKESRVRERISSRP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_280720.fa Sequence name : TGME49_280720 Sequence length : 556 VALUES OF COMPUTED PARAMETERS Coef20 : 5.206 CoefTot : 1.612 ChDiff : 37 ZoneTo : 44 KR : 4 DE : 0 CleavSite : 43 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.059 2.694 0.604 0.740 MesoH : 0.222 0.771 -0.101 0.302 MuHd_075 : 30.114 24.925 7.888 9.286 MuHd_095 : 26.879 11.491 5.330 5.668 MuHd_100 : 23.586 9.731 5.745 5.555 MuHd_105 : 23.269 11.240 5.767 5.887 Hmax_075 : 16.100 20.100 6.484 6.010 Hmax_095 : 14.600 12.162 6.211 4.471 Hmax_100 : 13.400 15.500 4.787 4.010 Hmax_105 : 11.667 9.800 4.328 3.780 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1189 0.8811 DFMC : 0.1442 0.8558 This protein is probably imported in mitochondria. f(Ser) = 0.1818 f(Arg) = 0.0909 CMi = 0.92166 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 556 TGME49_280720 MRRTVSTPVLCASVCVVLVSVALLHATPVSSSCLFSRFPSRAVVESRVQSCLPGAGREVSRLLDSGVPASAPLRRLQPRD 80 ARLSRPFLTLPSSSSSSLLSSSLSPRVSSSRNRLLPAAWLSVLRGCMRAVSRTRTSEGQPFLLPLPFSTFLRLHFLTTLL 160 SFTALGFNAFLSSRRLVLLPSLPRACLQLLNGNNQLHVFLRSVCTPDLPALQATVSGPFFEELQFRFLLQNCLLSPLLAA 240 VGSSWLSVAAGPGCRRLSPVKLEDGETTVRRDGQGASSPSDATASSKENAESTHPEARKRRLGSVEGSSLREKLARVLRC 320 ARLVETRERFFRDVSGANSSEKDLRAGCQQQLLQERREGSSPRCRVEQTLRIAITSILFALAHYVPPSVASPVRRQFRRA 400 VAKQRTRLGFPLEPSGAKRFSIGSVSSFSSPSVKQWSPRSAAQSAAPDAASFSSSTAFTSVPLAEEELFSVDSPQRRVED 480 CVAANRILTAAVQGCVWSYAAEKGGFASALLLHILHNLQQFLLVAAFRTFVRRRQERLSDGRLKESRVRERISSRP 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................................P................... 320 ...........P.................................................................... 400 ................................................................................ 480 ............................................................................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ TGME49_280720 2 -----MR|RT 0.073 . TGME49_280720 3 ----MRR|TV 0.212 . TGME49_280720 37 SSCLFSR|FP 0.122 . TGME49_280720 41 FSRFPSR|AV 0.165 . TGME49_280720 47 RAVVESR|VQ 0.093 . TGME49_280720 57 CLPGAGR|EV 0.125 . TGME49_280720 61 AGREVSR|LL 0.117 . TGME49_280720 74 PASAPLR|RL 0.079 . TGME49_280720 75 ASAPLRR|LQ 0.104 . TGME49_280720 79 LRRLQPR|DA 0.227 . TGME49_280720 82 LQPRDAR|LS 0.195 . TGME49_280720 85 RDARLSR|PF 0.217 . TGME49_280720 106 SSSLSPR|VS 0.106 . TGME49_280720 111 PRVSSSR|NR 0.067 . TGME49_280720 113 VSSSRNR|LL 0.102 . TGME49_280720 124 AWLSVLR|GC 0.080 . TGME49_280720 128 VLRGCMR|AV 0.144 . TGME49_280720 132 CMRAVSR|TR 0.084 . TGME49_280720 134 RAVSRTR|TS 0.095 . TGME49_280720 152 PFSTFLR|LH 0.075 . TGME49_280720 174 NAFLSSR|RL 0.065 . TGME49_280720 175 AFLSSRR|LV 0.078 . TGME49_280720 184 LLPSLPR|AC 0.075 . TGME49_280720 201 QLHVFLR|SV 0.241 . TGME49_280720 226 FEELQFR|FL 0.090 . TGME49_280720 255 AAGPGCR|RL 0.081 . TGME49_280720 256 AGPGCRR|LS 0.094 . TGME49_280720 261 RRLSPVK|LE 0.061 . TGME49_280720 270 DGETTVR|RD 0.082 . TGME49_280720 271 GETTVRR|DG 0.141 . TGME49_280720 287 DATASSK|EN 0.062 . TGME49_280720 298 STHPEAR|KR 0.089 . TGME49_280720 299 THPEARK|RR 0.073 . TGME49_280720 300 HPEARKR|RL 0.317 . TGME49_280720 301 PEARKRR|LG 0.545 *ProP* TGME49_280720 311 VEGSSLR|EK 0.066 . TGME49_280720 313 GSSLREK|LA 0.070 . TGME49_280720 316 LREKLAR|VL 0.114 . TGME49_280720 319 KLARVLR|CA 0.406 . TGME49_280720 322 RVLRCAR|LV 0.364 . TGME49_280720 327 ARLVETR|ER 0.076 . TGME49_280720 329 LVETRER|FF 0.096 . TGME49_280720 332 TRERFFR|DV 0.780 *ProP* TGME49_280720 342 GANSSEK|DL 0.101 . TGME49_280720 345 SSEKDLR|AG 0.107 . TGME49_280720 356 QQLLQER|RE 0.078 . TGME49_280720 357 QLLQERR|EG 0.103 . TGME49_280720 363 REGSSPR|CR 0.093 . TGME49_280720 365 GSSPRCR|VE 0.093 . TGME49_280720 371 RVEQTLR|IA 0.087 . TGME49_280720 394 SVASPVR|RQ 0.080 . TGME49_280720 395 VASPVRR|QF 0.210 . TGME49_280720 398 PVRRQFR|RA 0.408 . TGME49_280720 399 VRRQFRR|AV 0.499 . TGME49_280720 403 FRRAVAK|QR 0.076 . TGME49_280720 405 RAVAKQR|TR 0.076 . TGME49_280720 407 VAKQRTR|LG 0.087 . TGME49_280720 418 LEPSGAK|RF 0.060 . TGME49_280720 419 EPSGAKR|FS 0.383 . TGME49_280720 434 FSSPSVK|QW 0.081 . TGME49_280720 439 VKQWSPR|SA 0.298 . TGME49_280720 476 SVDSPQR|RV 0.131 . TGME49_280720 477 VDSPQRR|VE 0.153 . TGME49_280720 486 DCVAANR|IL 0.085 . TGME49_280720 503 WSYAAEK|GG 0.064 . TGME49_280720 528 LLVAAFR|TF 0.074 . TGME49_280720 532 AFRTFVR|RR 0.074 . TGME49_280720 533 FRTFVRR|RQ 0.118 . TGME49_280720 534 RTFVRRR|QE 0.117 . TGME49_280720 537 VRRRQER|LS 0.371 . TGME49_280720 542 ERLSDGR|LK 0.073 . TGME49_280720 544 LSDGRLK|ES 0.064 . TGME49_280720 547 GRLKESR|VR 0.082 . TGME49_280720 549 LKESRVR|ER 0.079 . TGME49_280720 551 ESRVRER|IS 0.099 . TGME49_280720 555 RERISSR|P- 0.102 . ____________________________^_________________

  • Fasta :-

    >TGME49_280720 CTCCATCCTCGCCGTCTTTGCATCCTCGCATCCTAAAAAGGACGTAGGAGACAGCTGTGC TCGCGGAGAAGCCGGTCTTTCTCGGCTGCTCTTGTGAGTCTCGGATTTCTCTCTGCAGTT CACGTATGCATTTCTGATTGATCCTTCGTCAGCAGCTCGAGACTGGAGAGTCACTGGAGC GTTTTTTCCCTTGGCCACAAGATGCGCAGAACCGTTTCCACGCCTGTCTTGTGTGCCTCC GTCTGTGTTGTCTTGGTCTCTGTCGCGCTTCTGCATGCAACTCCAGTCTCCTCGTCTTGC CTTTTTTCTCGATTTCCCTCCCGCGCAGTTGTCGAGTCGCGCGTTCAGTCTTGTCTGCCA GGCGCAGGACGCGAAGTTTCTCGTCTGCTGGACTCGGGCGTTCCTGCAAGTGCTCCGCTG CGGCGATTGCAGCCTCGCGACGCGCGTCTCTCTCGGCCTTTTTTGACACTCCCTTCTTCT TCTTCCTCGAGTCTCTTGTCTTCCTCTCTCTCTCCTCGGGTCTCGTCTTCCAGGAATCGG CTTCTTCCCGCAGCTTGGCTGTCGGTTCTTCGCGGGTGCATGCGCGCGGTGTCGCGGACT CGTACCTCAGAGGGACAGCCGTTCCTCCTCCCTTTGCCGTTCTCGACGTTCCTTCGTCTG CACTTCCTCACGACTCTTTTGTCTTTCACTGCTCTCGGCTTCAACGCCTTTCTTTCCTCG CGTCGCCTCGTGCTCCTCCCCTCGCTGCCGCGCGCCTGCCTGCAACTTCTGAACGGAAAC AACCAGCTCCACGTCTTTCTCAGGAGTGTATGCACACCCGACCTGCCCGCCCTGCAAGCG ACGGTGAGTGGGCCGTTCTTCGAGGAGCTCCAGTTCCGCTTTCTCCTGCAGAACTGTCTT CTCTCGCCGCTGCTGGCAGCAGTCGGCTCTTCTTGGCTGTCAGTTGCTGCTGGCCCAGGC TGTCGTCGCCTGTCGCCTGTGAAACTCGAGGACGGAGAGACGACGGTCCGGAGAGATGGT CAGGGTGCAAGTTCCCCCTCAGACGCAACTGCGAGTTCGAAAGAAAACGCAGAGTCGACG CATCCGGAGGCGAGGAAGCGGAGACTCGGCTCTGTGGAGGGGAGTTCTCTCCGCGAAAAG CTTGCGCGCGTTTTGCGATGCGCGAGACTCGTGGAGACCCGAGAAAGATTTTTTCGGGAT GTTTCCGGAGCGAACAGTTCGGAGAAAGACTTGCGCGCTGGCTGCCAACAGCAGCTTCTC CAGGAACGTCGAGAAGGATCTTCACCTCGTTGTCGAGTTGAACAGACTCTCCGAATCGCC ATAACATCCATCCTCTTCGCGCTGGCTCACTATGTTCCCCCCTCCGTTGCGTCTCCCGTC CGCCGTCAATTCCGGCGCGCCGTCGCGAAACAGAGGACGCGCCTCGGATTTCCTCTCGAA CCGTCCGGAGCGAAGCGCTTTTCCATCGGTTCGGTGTCCTCTTTCTCTTCTCCCTCTGTA AAGCAGTGGAGCCCTCGGTCTGCCGCACAGTCTGCGGCTCCGGATGCGGCTTCGTTTTCT TCTTCGACCGCGTTCACATCGGTCCCTCTCGCTGAAGAAGAACTTTTTTCTGTCGATTCA CCCCAACGCCGAGTGGAAGACTGCGTGGCTGCGAACCGCATTCTCACTGCCGCAGTGCAA GGCTGCGTCTGGAGTTACGCCGCGGAGAAAGGCGGTTTCGCAAGTGCTCTTCTGCTTCAC ATTCTGCACAATCTTCAACAATTTCTTTTGGTCGCTGCGTTCCGCACTTTCGTTCGCAGA CGGCAAGAACGACTTAGCGACGGGCGTTTGAAAGAGAGTCGCGTCCGTGAGAGGATTTCT TCTCGACCTTAAGTTCCTCGCTGTTTCCGAAGAAACTCTTCGCATCTGTGGCGGTGTAAG AAAGATTCAGTCCCACAACCTCCGCGGAGAGACCGCTCGAGCGGCTCTGGGAGCTCGTCT CGACCGCGAGACAAGACTGGACGCGACGATTGTCAGTGTTTTTCAGGAACGTCGTCCCCG GAGGCCTCATCTCTCAGCAATGTTTCTAGGTTTTCTGAGGATACACGACGAAGTGGACTC CTGTGTCGGTCCCGCAGTCTTCGTTGTACTGAGTGTCAACAAAAGTCCCGCTTTGTGCTT GTCGCAGAGAATGACCTCAGAACGAGCGAGACTATGAAGCAAATGCTTCTCCGCGTTTTT GAGGACCCTGGTCGACACAGAAGTTCCTCCACTGCTTCTGCAGCCTTGAAACGCACTGCA GATGAAAGTGCAACGCAAGTTTTCTTCTCCAAACTCAGAGCTCTCGAAACGTTCCGGGGA CAACGTAAAGAGGAGAAACGAAGTGTGTCAGGTCTTGTTAAACGGCAAGTCTGCGGCGTT TCCCACGCGCCATCCGATCGAGCCGAGTCCACGTTTCAGGACAAACTGCAGTTAAATCTG TGTTGTGGCAGCGAACTAATGGACTGCGTTAAATCAAAGATGTGATTAGTGAAGTGAGAT TCCACGGTGACTCGACAATCGAAAACGGTCTTTCTCGGTCAGTCTGAGAGGACAGCAAAG AGCGAAGAAAATCGCGATCGTCTCGCTGTGTCTTTGAAATAAAAAAGCCGCAGATACAGC AGTGTCTGCCCAAGGAGATGATCGACCCGTGAAGCCTATTTATTGATACTCG
  • Download Fasta

  • Fasta :-

    MRRTVSTPVLCASVCVVLVSVALLHATPVSSSCLFSRFPSRAVVESRVQSCLPGAGREVS RLLDSGVPASAPLRRLQPRDARLSRPFLTLPSSSSSSLLSSSLSPRVSSSRNRLLPAAWL SVLRGCMRAVSRTRTSEGQPFLLPLPFSTFLRLHFLTTLLSFTALGFNAFLSSRRLVLLP SLPRACLQLLNGNNQLHVFLRSVCTPDLPALQATVSGPFFEELQFRFLLQNCLLSPLLAA VGSSWLSVAAGPGCRRLSPVKLEDGETTVRRDGQGASSPSDATASSKENAESTHPEARKR RLGSVEGSSLREKLARVLRCARLVETRERFFRDVSGANSSEKDLRAGCQQQLLQERREGS SPRCRVEQTLRIAITSILFALAHYVPPSVASPVRRQFRRAVAKQRTRLGFPLEPSGAKRF SIGSVSSFSSPSVKQWSPRSAAQSAAPDAASFSSSTAFTSVPLAEEELFSVDSPQRRVED CVAANRILTAAVQGCVWSYAAEKGGFASALLLHILHNLQQFLLVAAFRTFVRRRQERLSD GRLKESRVRERISSRP

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_280720136 SRTRTSEGQP0.995unspTGME49_280720136 SRTRTSEGQP0.995unspTGME49_280720136 SRTRTSEGQP0.995unspTGME49_280720258 SCRRLSPVKL0.997unspTGME49_280720268 TDGETTVRRD0.992unspTGME49_280720278 SQGASSPSDA0.998unspTGME49_280720285 SDATASSKEN0.995unspTGME49_280720286 SATASSKENA0.994unspTGME49_280720304 SRRLGSVEGS0.996unspTGME49_280720309 SVEGSSLREK0.99unspTGME49_280720340 SGANSSEKDL0.997unspTGME49_280720361 SREGSSPRCR0.995unspTGME49_280720437 SVKQWSPRSA0.993unspTGME49_280720539 SQERLSDGRL0.997unspTGME49_280720104 SSSSLSPRVS0.991unspTGME49_280720108 SSPRVSSSRN0.995unsp

TGME49_080720      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India