TGME49_290005 | proteasome subunit beta type 1, putative

_IDPredictionOTHERSPmTPCS_Position
TGME49_290005OTHER0.9783880.0086960.012915
No Results

  • Fasta :-

    >TGME49_290005 MHALRTQAHTWKKTRRTRLSRQRKRSNFVTLCFFVLLEIRPSELIAPNEQTLCSLSTESL TAQLQRLGFPNFLSVFVLVVFFAFSITFSSVFFSSVFSFSPFSRFFSGAFNDSIMLAGGP ASLPTSRLLHPEEEAILPVALAAPMERRFSPYVNNGGTVVCVAGEDFAVAVGDTRLSTGF SIYSRRQSKITKLTDKVVLATSGMEADKTTLHNLLKIRIEQYTHQHRHPPSLNAIAQLLS TVLYSRRFFPFYTFNVLCGIDENGKGAVYGYDAIGSFEPSRYNCAGTGAHLIMPVLDNQI SRNNQQGEKAPLTRERIVEIVKSAVASAGERDIFTGDQAEVVMISQSGIEKTLMDLRAD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_290005.fa Sequence name : TGME49_290005 Sequence length : 359 VALUES OF COMPUTED PARAMETERS Coef20 : 4.832 CoefTot : 0.800 ChDiff : 7 ZoneTo : 37 KR : 10 DE : 0 CleavSite : 25 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.665 2.659 0.448 0.906 MesoH : 1.042 1.084 0.012 0.464 MuHd_075 : 23.785 15.939 7.267 4.868 MuHd_095 : 20.483 13.258 5.293 4.945 MuHd_100 : 29.389 11.546 7.709 5.052 MuHd_105 : 38.779 15.726 9.973 7.095 Hmax_075 : -5.367 0.900 -2.910 -0.830 Hmax_095 : -10.763 -3.400 -5.606 -1.220 Hmax_100 : -5.400 -4.700 -4.628 -0.920 Hmax_105 : 5.800 0.000 -1.368 1.530 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1262 0.8738 DFMC : 0.0449 0.9551 This protein is probably imported in mitochondria. f(Ser) = 0.0541 f(Arg) = 0.1892 CMi = 0.16142 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 359 TGME49_290005 MHALRTQAHTWKKTRRTRLSRQRKRSNFVTLCFFVLLEIRPSELIAPNEQTLCSLSTESLTAQLQRLGFPNFLSVFVLVV 80 FFAFSITFSSVFFSSVFSFSPFSRFFSGAFNDSIMLAGGPASLPTSRLLHPEEEAILPVALAAPMERRFSPYVNNGGTVV 160 CVAGEDFAVAVGDTRLSTGFSIYSRRQSKITKLTDKVVLATSGMEADKTTLHNLLKIRIEQYTHQHRHPPSLNAIAQLLS 240 TVLYSRRFFPFYTFNVLCGIDENGKGAVYGYDAIGSFEPSRYNCAGTGAHLIMPVLDNQISRNNQQGEKAPLTRERIVEI 320 VKSAVASAGERDIFTGDQAEVVMISQSGIEKTLMDLRAD 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_290005 5 --MHALR|TQ 0.076 . TGME49_290005 12 TQAHTWK|KT 0.075 . TGME49_290005 13 QAHTWKK|TR 0.092 . TGME49_290005 15 HTWKKTR|RT 0.093 . TGME49_290005 16 TWKKTRR|TR 0.112 . TGME49_290005 18 KKTRRTR|LS 0.218 . TGME49_290005 21 RRTRLSR|QR 0.215 . TGME49_290005 23 TRLSRQR|KR 0.087 . TGME49_290005 24 RLSRQRK|RS 0.304 . TGME49_290005 25 LSRQRKR|SN 0.357 . TGME49_290005 40 FVLLEIR|PS 0.071 . TGME49_290005 66 LTAQLQR|LG 0.090 . TGME49_290005 104 SFSPFSR|FF 0.207 . TGME49_290005 127 ASLPTSR|LL 0.101 . TGME49_290005 147 LAAPMER|RF 0.098 . TGME49_290005 148 AAPMERR|FS 0.145 . TGME49_290005 175 VAVGDTR|LS 0.065 . TGME49_290005 185 GFSIYSR|RQ 0.108 . TGME49_290005 186 FSIYSRR|QS 0.130 . TGME49_290005 189 YSRRQSK|IT 0.133 . TGME49_290005 192 RQSKITK|LT 0.086 . TGME49_290005 196 ITKLTDK|VV 0.067 . TGME49_290005 208 SGMEADK|TT 0.062 . TGME49_290005 216 TLHNLLK|IR 0.066 . TGME49_290005 218 HNLLKIR|IE 0.076 . TGME49_290005 227 QYTHQHR|HP 0.069 . TGME49_290005 246 STVLYSR|RF 0.069 . TGME49_290005 247 TVLYSRR|FF 0.119 . TGME49_290005 265 GIDENGK|GA 0.065 . TGME49_290005 281 GSFEPSR|YN 0.122 . TGME49_290005 302 LDNQISR|NN 0.133 . TGME49_290005 309 NNQQGEK|AP 0.058 . TGME49_290005 314 EKAPLTR|ER 0.085 . TGME49_290005 316 APLTRER|IV 0.169 . TGME49_290005 322 RIVEIVK|SA 0.075 . TGME49_290005 331 VASAGER|DI 0.139 . TGME49_290005 351 SQSGIEK|TL 0.070 . TGME49_290005 357 KTLMDLR|AD 0.074 . ____________________________^_________________

  • Fasta :-

    >TGME49_290005 ATGCACGCGCTACGCACTCAGGCACACACATGGAAGAAGACACGCAGAACGCGTCTCTCT CGACAGCGAAAACGCAGCAACTTTGTGACTTTGTGCTTTTTTGTTCTTCTGGAAATCCGT CCTTCTGAATTAATCGCACCGAATGAGCAAACTTTGTGCTCTCTGTCCACCGAGAGTCTC ACAGCCCAGCTGCAGAGACTCGGCTTTCCGAATTTCTTGTCCGTCTTCGTCCTCGTCGTC TTCTTCGCCTTCTCGATCACCTTCTCCTCTGTCTTCTTCTCGTCGGTCTTTTCCTTTTCG CCCTTCTCTCGTTTCTTTTCTGGCGCCTTTAACGACTCCATAATGCTGGCTGGCGGCCCG GCGTCTCTGCCGACTTCTCGACTCCTCCACCCAGAGGAGGAGGCTATTCTTCCAGTTGCG CTTGCCGCGCCCATGGAGCGTCGCTTCAGTCCTTACGTCAACAACGGAGGGACAGTGGTG TGCGTCGCTGGAGAGGACTTCGCCGTCGCGGTGGGAGACACGCGTTTGTCGACTGGCTTC TCCATCTACTCTCGTCGCCAGTCAAAGATCACGAAGCTGACTGACAAGGTTGTCCTGGCG ACCTCTGGCATGGAGGCTGACAAGACGACTCTCCACAACCTTCTCAAAATCCGTATCGAA CAGTACACGCACCAGCACCGCCATCCGCCCAGTCTGAACGCGATTGCTCAGCTGCTGTCG ACAGTGCTCTACTCTCGCCGCTTCTTCCCCTTCTATACTTTCAACGTCCTCTGCGGCATC GATGAAAACGGCAAAGGGGCAGTGTATGGCTACGATGCGATTGGATCCTTCGAGCCTTCT CGATACAACTGCGCAGGGACAGGAGCCCACCTGATCATGCCCGTTCTGGACAACCAGATC TCTCGGAATAACCAGCAAGGCGAGAAGGCGCCTTTGACGAGAGAGAGGATCGTCGAAATC GTCAAGAGTGCAGTGGCTTCTGCAGGCGAGCGCGACATTTTCACAGGCGACCAGGCGGAA GTGGTGATGATCAGTCAGAGTGGGATCGAAAAGACTCTCATGGACCTCCGCGCTGACTAA GAAAACGGAACAAGAAACGTCGATTTCTCATTATCTGTATCATCTTGTTTTACAATACCT GGAACGCTGAGTCACTGCAGCTGGGTACGGAAAAGACTGGTGGGCCGAGACACACAGTCG GCTTGCGTGCGACTCTGGCGAGGGTGGACGCTTGCGAAGGTGCTGCGGTGTACATACAGC GGGAGAAGTTTTGAAGGGAGAGCGCGGGTGGAGTCTCGTGCTGGTATCTGCTGGCACTCT TGGAAGTTTTGCGAATTGTCCGAGGAGAAACGAGCAGGCAGGCTAGAACATTTTCCCAAG CCCCTTCAAGTTCTGCGGAAAAGGGGAAGGGTGTAACGTCACCCGCTGTGCTCTATGCTT TAACGCGGGAAGAACGCGCCGAAGAGACCCAGAAAAGAAAGGCACAGAAATCCGTCCTGT TAGAGAAAGGCGTGCTCGTTTGCAGCGTGCACACACAAAGAGAGAGCGCGAAACAGGGGA TGCAGAGAGATGTGGAGACAAGTACCATATTAGAGTGAGTTAGGCAACTGTGTGTGTCCA TCTTGCTGATGCTAGCGGAAAACAGTTGGACAGAAGAGGCAGAAGGAGGAAACCTGCGCA GCGCAGAGACGGAAGGAGAGGAGCGATAGATCACAGTACAGACGAGACGGTGCACCGAAC ACGGACTGCACATATCCGCTACGGTGTGCATCTCCTTAAACAGACTCCGGAGAGAAAAGC TTCACTACCTGCGCAGGTTCTCACTTTGTCCCCCTGTTCGGCAGAAGAGAGTTCGACCGC AAGCAACAGCAGCGACTCTAGGTTTTCTTCGGACTGCTAGAAAGCTGTTTTTGAGTTCTT TTCGCGGCGAACTCTGTAGACAAGAAAGCAGGATTGGTCGCTGTCTCGAGCGCATGTGTC ACGATGTTTTGTCGTGTAGCGCGTCCATACCGTGATGTAGTTTTACCAACAAAGAGGTCT GAGCGAGGGAACCAGGATTCCAACAAAACGAACAGCAGCTTCTTTTGCGTAAACGTGAGT CGTATTGCGGTTCAGAACGGAGATACCGGAGGAGCAGGACCGCGTGGGCGTCGTTAGAGC CATCACCATGCACGGTCTTTTTAATCCGTTGTTCTGGCAGCAAGAACAGATCTTTGTTTT CAGCAGAACAGCCAGAGGTGTTTTTACCAAAGGTGTGTCTCAGCGGTAGTGCGTCTCGCA GTGAGCAAATGGGGATACACGTGTGGGAAGTGAGGTGTTGCGACTTGTGTGTGCGATGCT GCTTGCAGAAGTGAGCATGTTTGCATGTCCGCCTTTAGTTTCGCACTTCACTGTTTCGGA GCGGGCAAGATAAAAAGAACTCAGTGGTTTGTCTTGGTTTTCTGTAGTGGCGCCGCATCA CGGAATCCCTCACTCCTCTCCTGCGTTCTGGAGTCACAAAAAACAACACACCAGGCTTTG ATTGCGATTGCTTCATCAGCGCTGTTACTTTTTCCCGTTGGGATGGAAGTTTCATTTCAG TGTATATCCGTACAAGCTGGGTCACAGGCGCACCTTCAGAAACAGATAAGCCTGTCCTGG TAACAACGCACTCGTTTTGCCGATACCACAACAGCCCTCGCATGGCAACGGGACAGAGGC GCTATGCGTCGAGTCGATCCGTGGGATCTGTACGAAAAGAAGCGCGAGTTTTTCATGCAA TTTCTATGGTTCAGCGCGGCGTGGTGGGGCATTCTCCTATTTCGCAACTTGTGTACATGC ACACTGCGTTAACTCCCAAGGCAGGACACC
  • Download Fasta

  • Fasta :-

    MHALRTQAHTWKKTRRTRLSRQRKRSNFVTLCFFVLLEIRPSELIAPNEQTLCSLSTESL TAQLQRLGFPNFLSVFVLVVFFAFSITFSSVFFSSVFSFSPFSRFFSGAFNDSIMLAGGP ASLPTSRLLHPEEEAILPVALAAPMERRFSPYVNNGGTVVCVAGEDFAVAVGDTRLSTGF SIYSRRQSKITKLTDKVVLATSGMEADKTTLHNLLKIRIEQYTHQHRHPPSLNAIAQLLS TVLYSRRFFPFYTFNVLCGIDENGKGAVYGYDAIGSFEPSRYNCAGTGAHLIMPVLDNQI SRNNQQGEKAPLTRERIVEIVKSAVASAGERDIFTGDQAEVVMISQSGIEKTLMDLRAD

  • title: active site
  • coordinates: G157,D173,R175,K189,T287,D332,T335,G336
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_29000520 SRTRLSRQRK0.995unspTGME49_290005150 SERRFSPYVN0.997unsp

TGME49_090005      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India