TGME49_300060 | signal peptidase subunit protein

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  • Fasta :-

    >TGME49_300060 MDTYLNRGNAVVCTLLAALALAAVGNHFSTYLFQADPTGKVSIAEVYEFGVNNALQGEQA QVALNIQADLTSCFNWNTQQLFVYVIVRYETPKNPRNEVIVWDRIITDPDDAIIDFEGVI NKYPLRDNGRSLRNRTVTVALEYAYHPVVGVIKSGHVASSTYTLPSSYFRYAKGN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_300060.fa Sequence name : TGME49_300060 Sequence length : 175 VALUES OF COMPUTED PARAMETERS Coef20 : 4.430 CoefTot : 0.118 ChDiff : -2 ZoneTo : 35 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.647 2.147 0.362 0.668 MesoH : -0.078 0.522 -0.272 0.306 MuHd_075 : 19.205 14.260 4.532 3.913 MuHd_095 : 18.738 17.011 6.271 5.090 MuHd_100 : 17.675 16.331 5.708 5.644 MuHd_105 : 16.169 14.037 4.893 5.228 Hmax_075 : 9.300 21.000 2.592 6.940 Hmax_095 : 14.700 17.800 3.088 6.240 Hmax_100 : 14.700 18.100 3.088 6.240 Hmax_105 : 15.575 21.200 2.364 6.318 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9838 0.0162 DFMC : 0.9781 0.0219
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 175 TGME49_300060 MDTYLNRGNAVVCTLLAALALAAVGNHFSTYLFQADPTGKVSIAEVYEFGVNNALQGEQAQVALNIQADLTSCFNWNTQQ 80 LFVYVIVRYETPKNPRNEVIVWDRIITDPDDAIIDFEGVINKYPLRDNGRSLRNRTVTVALEYAYHPVVGVIKSGHVASS 160 TYTLPSSYFRYAKGN 240 ................................................................................ 80 ................................................................................ 160 ............... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_300060 7 MDTYLNR|GN 0.081 . TGME49_300060 40 QADPTGK|VS 0.061 . TGME49_300060 88 FVYVIVR|YE 0.083 . TGME49_300060 93 VRYETPK|NP 0.066 . TGME49_300060 96 ETPKNPR|NE 0.071 . TGME49_300060 104 EVIVWDR|II 0.091 . TGME49_300060 122 FEGVINK|YP 0.055 . TGME49_300060 126 INKYPLR|DN 0.137 . TGME49_300060 130 PLRDNGR|SL 0.127 . TGME49_300060 133 DNGRSLR|NR 0.168 . TGME49_300060 135 GRSLRNR|TV 0.214 . TGME49_300060 153 PVVGVIK|SG 0.075 . TGME49_300060 170 LPSSYFR|YA 0.163 . TGME49_300060 173 SYFRYAK|GN 0.157 . ____________________________^_________________

  • Fasta :-

    >TGME49_300060 TTCGTCCTGTGCTAGACACTTTCCGCAATTGTCACATGCCCTCTCTAGCGGTTTTCTCTC TGCCAAGACGCATTTACCGCTTCGGTGTGTATTCGCTGCCAATTTCCGTTTTTCGAGCAT ATACTATGCTTCGTTTGTTTTCGTTCTTGGGAGAGCTTCTGGACGCGGTTTTGTGTGGTT CATCATTGCTTCCCCCGTGGGACTGACAATTGCCGTGCTCCTCCTCTCTGAAATCTGTAC TAGATACTGGTGCCCCAATCGGAATATTCCGCCAGGCGAAAGGAAGAAATGTGAGACAGC AGGAGCGGAATCTGAAAAGACGCGGGGATAGTTTCCGAGCTCCGGTTTAGGTCGTCTGTG CACGTCTCCAACTTGCGCTGTTTACCCGGCCCCCAGTACGTTTTTCTCCCGCGTCCCACG GTGTCTCGTGAGAGCTTTTTTCTCCACTACGGAGACACGCGAAGCTTTGGAGCCGCCTTC GGTTCCTGGTTCTATTCAGAGACTCGGTTGTCGCGAAGCATCACGTTCCTGAAAAACGGT TTGGTGCCCATACAGGCTGTACGAAGTGTGAAGCACGGCAGTAGCTGAATATGCCAGCAG AGAGGGGCTGCCTAAGCTGTTTTCTCTCCCGGTAAACAGATGCTGTGGGCGAAGCCGCCC TTCTTTCCTGGTACGCCTTTCCGGGTCGCATTTGCCCACAAGACACCAGGAACCGAGTTC ACTGTCCCTGCGCCCAGGTGGGCAAACTCTTGGGTAGCGTCTGTCTCCTCGACAAAGTCG GATTTCAGCGAAACAGCTGAACACAATAGCTCCTTACCCCATCTTTCTGTATCTCACTGG TACCGATTCGCCTGCGGATATCCGGCAAGCGCTTTGTGAGACTCTCAGGAGTGCTGTCTC AGTGTCACTTCACCGGGGCAGTGACCGCGTCGCGCGTTTTGATGCTCCCGCACTTCTTTC AGTCTTTGATTTTTGCACTTAAGCAAAGAACTCATTTTCTTTGCGGCTTCGTTCGAACGT TTCTTTTCCCGCGTTCCGTCCTTTTTCGTCGGGTTTTGCCCGTGGAGCTCTCACCCTTTT TGAACCTAACGTTGTTTGCAAAAGAGTGCTTCCTCTCGTTTTTCTGGTCAGCTGCTTTTT CTTAGAGTTCCACAGAAGCAAGGCAGCTCTGCACCTTTTTCAGTGCCAACCTCTTGAGCA CGGATTCCCGAGGCATCCACGCCAGGAGCCTGTGGAGGACGGGAACGTGTCGCTTAGCGT GTCTTGCCGAACGGTCTCTGCTCTGACGCGTTGCGCTCCCGTGCTGTGCACGTCTTTTTG CATGCACTTTCGCGAGGATGGATACGTATTTGAATCGCGGAAATGCAGTCGTCTGCACCC TTCTAGCAGCACTCGCCTTGGCGGCAGTGGGAAACCACTTTTCGACGTATCTGTTTCAGG CAGACCCAACGGGAAAAGTGTCGATCGCCGAAGTGTATGAGTTCGGAGTCAACAATGCAC TCCAAGGCGAGCAAGCACAGGTGGCGCTGAATATCCAGGCAGACCTGACCAGTTGCTTCA ATTGGAACACGCAGCAGCTTTTCGTTTACGTCATTGTCAGGTACGAGACGCCGAAGAACC CGCGCAACGAAGTGATTGTCTGGGATCGCATCATCACCGACCCCGATGATGCCATAATAG ATTTCGAGGGCGTTATAAACAAGTACCCTCTGAGAGACAACGGCCGCAGTCTCCGAAACC GCACGGTCACTGTCGCTCTCGAGTACGCGTATCACCCGGTTGTCGGGGTCATCAAAAGTG GCCACGTCGCCTCTTCCACGTACACTCTGCCGTCCTCGTATTTTCGGTATGCCAAAGGCA ACTAAAGCACAGGAAACAGAACAGGCCGGCTACTGAGTTCGGTAAAGAGACTAGTAGGTC TCCAAACAGACGGTCGCGAAAAGACACCGCACGGCGGAACAGGCTTTCCCGCTCGCTGTA AAAAAAATTCGGATAAACGCATGGAACAACAAAGCACTTTGAGGGAGCAACCATGGAAGG GCATAAACAAGGAAAACAGAGGGCGGAGCCTCTCATGTAACGGGAACCACTGGCCTGACC GTGAAGGCAAGCGTCTGTCACCGCACTGTACGGCGCAACAAAAAAAAGTTCATTTTGGGG TTTCAGTGGTATGCCAACGTTCTTCAAGCATTGTGGAGGTAAACACACCAGTTTCGGACA AATGTCGAATTTCTGCTGTTCTGCCCGAGCTTATCTTCTGGATGCAGAGGTTATTCTGCA TCCGTCCCTGCGCCGTCTACGTGCCTCGGTAAACGATTGAGTGTAAGGCAACTCTGTGAT TTTTCGAAGACGAAATCCGGACACTGTTCAAGCGAAACGG
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IDSitePeptideScoreMethod
TGME49_30006091 TVRYETPKNP0.99unsp

TGME49_100060      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India