TGME49_306930 | proteasome subunit beta type 7 precursor, putative

_IDPredictionOTHERSPmTPCS_Position
TGME49_306930OTHER0.9295640.0331280.037307
No Results

  • Fasta :-

    >TGME49_306930 MPFPPFLVTSTCPIDPFRSSAPVCLPVFRVSAPCLLLASRTSKTLHSLPVPTVCVGLSVA VRSRSRCSAPDLPFYRFLRASTMDSISQLALQRGGYDFSNHQRNVRLLMEAAKRCPAVAG SPTPPGLPPARKTGTTICGVVCKDGVVLGADTRATEGTIVADKNCSKLHRIADNMYAAGA GTSADLDHMCDWLAVQVELHRLNTNAKPRVSMAVSVLSQELFKYQGYKGCAVVLGGVDFK GPQIYKIHPHGSTDCSNFAAMGSGSLNAMAVLEAGYKDGMTLEEGKNLVRDAIKAGVLND LGSGGNIDLCIITREGAQHLRKFETPTQRPFQATHPVFPKGTTPVLLEKIEQLKSRLEFS QEVEMVEA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_306930.fa Sequence name : TGME49_306930 Sequence length : 368 VALUES OF COMPUTED PARAMETERS Coef20 : 3.840 CoefTot : 0.100 ChDiff : 8 ZoneTo : 70 KR : 7 DE : 1 CleavSite : 68 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.471 1.759 0.314 0.566 MesoH : -0.024 0.593 -0.092 0.223 MuHd_075 : 23.312 15.090 5.186 5.502 MuHd_095 : 31.644 19.169 8.659 6.182 MuHd_100 : 38.146 20.232 10.361 7.119 MuHd_105 : 37.660 24.171 10.811 7.801 Hmax_075 : 15.300 16.917 4.831 4.305 Hmax_095 : 13.825 15.700 4.193 4.750 Hmax_100 : 16.000 16.000 3.874 5.930 Hmax_105 : 15.663 16.600 3.636 6.778 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7949 0.2051 DFMC : 0.4880 0.5120 This protein is probably imported in mitochondria. f(Ser) = 0.1571 f(Arg) = 0.0857 CMi = 0.82707 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 368 TGME49_306930 MPFPPFLVTSTCPIDPFRSSAPVCLPVFRVSAPCLLLASRTSKTLHSLPVPTVCVGLSVAVRSRSRCSAPDLPFYRFLRA 80 STMDSISQLALQRGGYDFSNHQRNVRLLMEAAKRCPAVAGSPTPPGLPPARKTGTTICGVVCKDGVVLGADTRATEGTIV 160 ADKNCSKLHRIADNMYAAGAGTSADLDHMCDWLAVQVELHRLNTNAKPRVSMAVSVLSQELFKYQGYKGCAVVLGGVDFK 240 GPQIYKIHPHGSTDCSNFAAMGSGSLNAMAVLEAGYKDGMTLEEGKNLVRDAIKAGVLNDLGSGGNIDLCIITREGAQHL 320 RKFETPTQRPFQATHPVFPKGTTPVLLEKIEQLKSRLEFSQEVEMVEA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_306930 18 CPIDPFR|SS 0.128 . TGME49_306930 29 VCLPVFR|VS 0.076 . TGME49_306930 40 CLLLASR|TS 0.064 . TGME49_306930 43 LASRTSK|TL 0.145 . TGME49_306930 62 GLSVAVR|SR 0.124 . TGME49_306930 64 SVAVRSR|SR 0.131 . TGME49_306930 66 AVRSRSR|CS 0.083 . TGME49_306930 76 PDLPFYR|FL 0.118 . TGME49_306930 79 PFYRFLR|AS 0.160 . TGME49_306930 93 SQLALQR|GG 0.078 . TGME49_306930 103 DFSNHQR|NV 0.128 . TGME49_306930 106 NHQRNVR|LL 0.198 . TGME49_306930 113 LLMEAAK|RC 0.065 . TGME49_306930 114 LMEAAKR|CP 0.123 . TGME49_306930 131 PGLPPAR|KT 0.120 . TGME49_306930 132 GLPPARK|TG 0.084 . TGME49_306930 143 ICGVVCK|DG 0.072 . TGME49_306930 153 VLGADTR|AT 0.089 . TGME49_306930 163 GTIVADK|NC 0.062 . TGME49_306930 167 ADKNCSK|LH 0.063 . TGME49_306930 170 NCSKLHR|IA 0.139 . TGME49_306930 201 VQVELHR|LN 0.071 . TGME49_306930 207 RLNTNAK|PR 0.064 . TGME49_306930 209 NTNAKPR|VS 0.111 . TGME49_306930 223 LSQELFK|YQ 0.083 . TGME49_306930 228 FKYQGYK|GC 0.078 . TGME49_306930 240 LGGVDFK|GP 0.063 . TGME49_306930 246 KGPQIYK|IH 0.056 . TGME49_306930 277 VLEAGYK|DG 0.066 . TGME49_306930 286 MTLEEGK|NL 0.053 . TGME49_306930 290 EGKNLVR|DA 0.110 . TGME49_306930 294 LVRDAIK|AG 0.058 . TGME49_306930 314 DLCIITR|EG 0.081 . TGME49_306930 321 EGAQHLR|KF 0.083 . TGME49_306930 322 GAQHLRK|FE 0.100 . TGME49_306930 329 FETPTQR|PF 0.080 . TGME49_306930 340 THPVFPK|GT 0.090 . TGME49_306930 349 TPVLLEK|IE 0.057 . TGME49_306930 354 EKIEQLK|SR 0.061 . TGME49_306930 356 IEQLKSR|LE 0.109 . ____________________________^_________________

  • Fasta :-

    >TGME49_306930 AAAAAAGAGACTTCGCGACAGTAGACCTCGTCGGTTTTCCTCTTGAAACAAGGACTTGTG GACGTATAACACACACGGATTGTCTTTGAAAACTGTAGCCCGTGTTTCGTACGGCAAAAA AGCACTAGGCTCTCACCCGTGTGCCTTCCCGTTTCACAACGCCGTGGTCTCTTCTCCAAC AGGGTGTTTCTCGCTGCGGTTGTCGGTCTTTCCTCCACGCTTGATTTCTTCGTGTGTTCT CCATCGGACTGTGTGTGCATGCCATTTCCTCCCTTTCTGGTTACCTCCACTTGTCCAATA GATCCCTTCAGATCCTCTGCCCCGGTTTGTCTTCCTGTTTTCCGTGTTTCTGCACCGTGT CTGTTGCTGGCATCTCGGACCTCAAAAACCCTTCACTCTCTGCCAGTCCCGACTGTCTGT GTCGGTCTTTCTGTCGCTGTGCGTTCTCGAAGCCGTTGCAGTGCGCCGGACTTGCCTTTT TACCGTTTTCTCCGCGCTTCCACCATGGACAGCATCTCACAGTTGGCCCTCCAGCGTGGA GGCTACGACTTTTCAAACCACCAGAGAAACGTCCGTTTGTTGATGGAGGCGGCTAAACGC TGCCCGGCGGTAGCAGGGTCGCCTACGCCGCCCGGCCTGCCTCCGGCGCGAAAAACAGGA ACGACAATCTGTGGAGTTGTGTGCAAAGACGGAGTCGTTTTGGGCGCCGACACGCGCGCC ACAGAGGGCACCATTGTCGCGGACAAAAACTGCAGCAAACTCCACCGAATCGCCGACAAC ATGTACGCCGCTGGAGCAGGCACATCCGCTGATCTTGACCATATGTGCGACTGGCTAGCT GTTCAGGTGGAACTACACCGCCTCAACACGAATGCGAAGCCTCGCGTCTCAATGGCTGTC TCCGTTCTGAGTCAGGAGCTCTTCAAGTATCAGGGCTACAAAGGCTGCGCTGTGGTACTC GGCGGCGTGGATTTCAAGGGTCCTCAAATCTATAAAATCCATCCTCATGGCAGCACCGAT TGTTCCAACTTTGCCGCTATGGGCAGCGGCAGCTTGAACGCCATGGCTGTCCTCGAGGCA GGGTACAAGGACGGCATGACCTTGGAGGAGGGGAAGAACCTCGTCCGCGACGCCATCAAA GCGGGGGTCCTCAACGATCTGGGAAGTGGAGGAAACATCGACTTGTGCATCATCACGCGT GAGGGCGCTCAACATCTTCGCAAGTTCGAGACGCCTACGCAGCGACCCTTTCAGGCTACA CACCCTGTCTTCCCGAAAGGCACAACACCTGTTCTCCTGGAAAAGATTGAGCAGCTGAAG AGTCGCCTCGAGTTCTCCCAGGAGGTCGAGATGGTCGAGGCGTGAGCGTTCCGAGACTGG AGGCGTAACAGAACAGACTCGCCTCCGGAACGCGACGGAGCGGCCAAAAGACCAGAGACG AGAACGCGGCATCTTTTCGGGGGGGGGGGGCGGCTTGAAGGCGACTGCTAGTTGAGTTGG GTGTTGGACACCTCTGTCGTGAGCAATGCAGGGACAAGGGAGACGTTGACAGAACGCTCG AGAGCAGAACGAGAGAAAAAACGGTAGAGGAGGGTATCGCGAAAGGCACTCTGCACGAGA AAATCTGGAACACGTCCACTGAAGAAGAGCATAGTATGCGCCGACGGTACGACGGTCCAG ACGCTGAGTCTCGCGTGAAGTGAGAAAGAAAAAACAAGACTAGGCGTACAACATATGTCG GGGAAAGAGTGATGACAGCTGAAGCAACGCGCCGTAGAACATCAGAGACACGAGAGAGAG CGCGACCGGGCAGGCGTTGAAGAAGAGGGAAGCTGCTGGCACCTTTCCCTAAAAACTCGA AAGTGCACGTGCTGAAACGCAGTGTGCAGCGACTGTGATTGTCTCTGGACGTTTGAGTAC AAGGACATGCCTGGAAATCCACAGGAAAGCGACAAAAAACCTCGAGAAACGTGTGGCTCC A
  • Download Fasta

  • Fasta :-

    MPFPPFLVTSTCPIDPFRSSAPVCLPVFRVSAPCLLLASRTSKTLHSLPVPTVCVGLSVA VRSRSRCSAPDLPFYRFLRASTMDSISQLALQRGGYDFSNHQRNVRLLMEAAKRCPAVAG SPTPPGLPPARKTGTTICGVVCKDGVVLGADTRATEGTIVADKNCSKLHRIADNMYAAGA GTSADLDHMCDWLAVQVELHRLNTNAKPRVSMAVSVLSQELFKYQGYKGCAVVLGGVDFK GPQIYKIHPHGSTDCSNFAAMGSGSLNAMAVLEAGYKDGMTLEEGKNLVRDAIKAGVLND LGSGGNIDLCIITREGAQHLRKFETPTQRPFQATHPVFPKGTTPVLLEKIEQLKSRLEFS QEVEMVEA

  • title: active site
  • coordinates: T135,D151,R153,K167,S263,D300,S303,G304
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_30693081 SFLRASTMDS0.997unspTGME49_30693081 SFLRASTMDS0.997unspTGME49_30693081 SFLRASTMDS0.997unspTGME49_30693065 SVRSRSRCSA0.992unspTGME49_30693068 SRSRCSAPDL0.995unsp

TGME49_106930      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India