TGME49_318320 | ATP-dependent Clp endopeptidase, proteolytic subunit ClpP domain-containing protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TGME49_318320OTHER0.9553890.0340390.010572
No Results

  • Fasta :-

    >TGME49_318320 MQLLLSNTLSSSRSQLIPSHLCTSSELSPFFLRRFPALHFSCLARSFLVLSLLSSFAAAS SPSLSPPSFLQPPSSALSSLSSPFSSFSSLSTTFSSSPSSSLNSHRLLKPSGWSGKRRYL SPSSQKEGRSLVKHSFFLRSEGFGELARRSDGLAMTDGESVGCMYTPGHVSPYTVSDGSS FPGREVSETLDRFFLRRRVLFLQGPLTDELASFLASQLLFLAAHAEDEKGGRDEGERKED EEDDRGQDRNRAWRSDERVFCVSSQRDRRFASPHDRKRRRQMPFFSSLFPDSCTESECLT SRRQQESEQRQTTASCLPPVDLLINSPGGSVTAALSLLDLRHSLPFEVHTTSIGQAGGVA ALLLAAGTPGHRRAFPSCRFSLRQIEGRVEGQAETIERETAEIESVQRLVYRHLAAFCTR RGPGDRGSERESHSERGEAGEDRERLAKREKEIQEDCENELFLSAEQGVEYGLIDQVIQP LRGRPH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_318320.fa Sequence name : TGME49_318320 Sequence length : 486 VALUES OF COMPUTED PARAMETERS Coef20 : 4.407 CoefTot : 3.446 ChDiff : -1 ZoneTo : 140 KR : 13 DE : 2 CleavSite : 141 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.729 1.706 0.240 0.591 MesoH : 0.960 0.613 -0.008 0.288 MuHd_075 : 30.569 26.318 8.821 8.749 MuHd_095 : 42.826 24.451 12.053 9.802 MuHd_100 : 37.624 19.825 10.357 8.075 MuHd_105 : 34.761 20.217 10.196 6.822 Hmax_075 : 6.183 16.217 2.343 5.192 Hmax_095 : 11.000 9.000 1.770 2.680 Hmax_100 : 11.000 17.200 0.930 3.240 Hmax_105 : 9.000 18.200 0.930 7.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0521 0.9479 DFMC : 0.0009 0.9991 This protein is probably imported in chloroplast. f(Ser) = 0.3214 f(Arg) = 0.0643 CMi = 2.00893 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 486 TGME49_318320 MQLLLSNTLSSSRSQLIPSHLCTSSELSPFFLRRFPALHFSCLARSFLVLSLLSSFAAASSPSLSPPSFLQPPSSALSSL 80 SSPFSSFSSLSTTFSSSPSSSLNSHRLLKPSGWSGKRRYLSPSSQKEGRSLVKHSFFLRSEGFGELARRSDGLAMTDGES 160 VGCMYTPGHVSPYTVSDGSSFPGREVSETLDRFFLRRRVLFLQGPLTDELASFLASQLLFLAAHAEDEKGGRDEGERKED 240 EEDDRGQDRNRAWRSDERVFCVSSQRDRRFASPHDRKRRRQMPFFSSLFPDSCTESECLTSRRQQESEQRQTTASCLPPV 320 DLLINSPGGSVTAALSLLDLRHSLPFEVHTTSIGQAGGVAALLLAAGTPGHRRAFPSCRFSLRQIEGRVEGQAETIERET 400 AEIESVQRLVYRHLAAFCTRRGPGDRGSERESHSERGEAGEDRERLAKREKEIQEDCENELFLSAEQGVEYGLIDQVIQP 480 LRGRPH 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............P..............P................................................... 320 ................................................................................ 400 ................................................................................ 480 ...... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ TGME49_318320 13 NTLSSSR|SQ 0.073 . TGME49_318320 33 LSPFFLR|RF 0.073 . TGME49_318320 34 SPFFLRR|FP 0.159 . TGME49_318320 45 HFSCLAR|SF 0.117 . TGME49_318320 106 SSLNSHR|LL 0.123 . TGME49_318320 109 NSHRLLK|PS 0.185 . TGME49_318320 116 PSGWSGK|RR 0.061 . TGME49_318320 117 SGWSGKR|RY 0.093 . TGME49_318320 118 GWSGKRR|YL 0.379 . TGME49_318320 126 LSPSSQK|EG 0.059 . TGME49_318320 129 SSQKEGR|SL 0.181 . TGME49_318320 133 EGRSLVK|HS 0.062 . TGME49_318320 139 KHSFFLR|SE 0.232 . TGME49_318320 148 GFGELAR|RS 0.081 . TGME49_318320 149 FGELARR|SD 0.192 . TGME49_318320 184 GSSFPGR|EV 0.295 . TGME49_318320 192 VSETLDR|FF 0.077 . TGME49_318320 196 LDRFFLR|RR 0.080 . TGME49_318320 197 DRFFLRR|RV 0.150 . TGME49_318320 198 RFFLRRR|VL 0.112 . TGME49_318320 229 AHAEDEK|GG 0.065 . TGME49_318320 232 EDEKGGR|DE 0.098 . TGME49_318320 237 GRDEGER|KE 0.080 . TGME49_318320 238 RDEGERK|ED 0.078 . TGME49_318320 245 EDEEDDR|GQ 0.087 . TGME49_318320 249 DDRGQDR|NR 0.073 . TGME49_318320 251 RGQDRNR|AW 0.108 . TGME49_318320 254 DRNRAWR|SD 0.627 *ProP* TGME49_318320 258 AWRSDER|VF 0.071 . TGME49_318320 266 FCVSSQR|DR 0.080 . TGME49_318320 268 VSSQRDR|RF 0.075 . TGME49_318320 269 SSQRDRR|FA 0.703 *ProP* TGME49_318320 276 FASPHDR|KR 0.105 . TGME49_318320 277 ASPHDRK|RR 0.074 . TGME49_318320 278 SPHDRKR|RR 0.167 . TGME49_318320 279 PHDRKRR|RQ 0.406 . TGME49_318320 280 HDRKRRR|QM 0.123 . TGME49_318320 302 SECLTSR|RQ 0.080 . TGME49_318320 303 ECLTSRR|QQ 0.146 . TGME49_318320 310 QQESEQR|QT 0.083 . TGME49_318320 341 LSLLDLR|HS 0.077 . TGME49_318320 372 AGTPGHR|RA 0.074 . TGME49_318320 373 GTPGHRR|AF 0.127 . TGME49_318320 379 RAFPSCR|FS 0.118 . TGME49_318320 383 SCRFSLR|QI 0.130 . TGME49_318320 388 LRQIEGR|VE 0.154 . TGME49_318320 398 QAETIER|ET 0.103 . TGME49_318320 408 EIESVQR|LV 0.104 . TGME49_318320 412 VQRLVYR|HL 0.096 . TGME49_318320 420 LAAFCTR|RG 0.079 . TGME49_318320 421 AAFCTRR|GP 0.169 . TGME49_318320 426 RRGPGDR|GS 0.123 . TGME49_318320 430 GDRGSER|ES 0.105 . TGME49_318320 436 RESHSER|GE 0.120 . TGME49_318320 443 GEAGEDR|ER 0.084 . TGME49_318320 445 AGEDRER|LA 0.074 . TGME49_318320 448 DRERLAK|RE 0.119 . TGME49_318320 449 RERLAKR|EK 0.362 . TGME49_318320 451 RLAKREK|EI 0.066 . TGME49_318320 482 QVIQPLR|GR 0.077 . TGME49_318320 484 IQPLRGR|PH 0.079 . ____________________________^_________________

  • Fasta :-

    >TGME49_318320 TTTTTTCTCCTCGCGCTTCTCTCCTGGTCTCGACAAGTTTTTCGTTTCTCTTCCTCTCTG ACGGCACTACGCCGCCTGCAGGCTCTGTCTCCTTCGCGGGTGATCGTCTTGCCTCGCGCG TCGAGCGCCAACCTCCTTTCTTCTCCTACACGTTTCGTTGTCGTTCTGCACATTCTTCTC CCCGTATCCCTCTTTCCATCTTTCCATCTTTCCATCTTTCCATCTTCGTCCACCGCTCTC TGTTTGGTCCTTTCCTTCTTTCTTTTCTTCTTTCTTCCCCTCTTTCTGTTTTTCCTCTTC CTGTCTGTGTCTCTTTCGCGACCTCCGTCCATGTATCCTTGCATCTTGTACGCTTATTAT TGGAGGCGACAGCACCTGCGAAGTCCTTTCTTCAGAGGACGCAGCGAACCTCCTCTGAAA CTTTGTGTCAGCGCTAAGTCTGAGAAGCAGCGAACCGTGGGGAAGACAAAGCATTTGCTC CGAGAGGCGCGAGACCGAAACGCACCATGCAGCTGCTGCTGTCAAATACTCTCTCTTCTT CCCGCTCTCAGCTCATTCCCTCTCATCTGTGTACCTCTTCTGAGCTCTCGCCTTTCTTTC TGAGACGTTTTCCGGCTCTCCACTTCTCTTGCCTCGCTCGTTCGTTTCTCGTTCTCTCTC TTCTCTCCTCTTTCGCAGCGGCTTCTTCGCCTTCTCTTTCTCCTCCGTCTTTCCTTCAAC CTCCTTCCTCTGCTCTCTCTTCTCTCTCTTCTCCATTTTCTTCTTTCTCTTCTCTCTCCA CTACCTTTTCGTCTTCTCCCAGTTCTTCGCTGAATTCGCATCGATTGTTAAAGCCATCGG GATGGTCAGGGAAGAGGCGGTATCTCAGTCCTTCCTCTCAAAAGGAAGGAAGAAGTCTCG TAAAACATAGTTTTTTCCTCCGTTCGGAAGGCTTCGGGGAGCTTGCGAGACGCAGCGATG GCCTCGCAATGACAGATGGCGAGTCCGTGGGGTGTATGTACACCCCAGGGCACGTCTCGC CGTACACGGTTTCGGATGGGAGTTCGTTTCCAGGTCGAGAGGTCTCGGAGACGCTCGACC GCTTCTTCCTCCGTCGGCGAGTCCTGTTCCTCCAAGGTCCGTTGACTGACGAATTGGCGT CTTTCCTCGCTTCTCAGCTGCTCTTCTTGGCGGCGCATGCAGAGGACGAGAAGGGAGGAC GCGACGAAGGAGAGAGAAAGGAAGACGAAGAAGACGACAGAGGACAAGACCGGAACAGGG CGTGGAGGTCGGACGAGAGAGTCTTCTGTGTGTCCTCCCAGAGAGACCGACGTTTCGCGT CTCCGCATGACAGAAAGCGACGTCGACAGATGCCCTTCTTCTCCTCGCTCTTTCCAGACT CCTGCACAGAATCCGAGTGCTTGACTTCAAGGAGACAACAAGAAAGTGAACAGAGACAGA CGACCGCCTCTTGTCTTCCTCCTGTTGACCTTCTCATCAACTCCCCGGGGGGATCGGTGA CAGCAGCGCTGAGCCTCTTGGATCTCCGTCACTCGCTGCCTTTTGAAGTCCACACCACAT CCATCGGTCAGGCAGGGGGCGTCGCGGCGCTTCTCCTCGCTGCGGGGACGCCCGGGCATC GCCGCGCGTTTCCTTCCTGCCGCTTTTCTCTTCGACAAATCGAAGGTCGCGTCGAAGGCC AGGCGGAAACGATTGAGCGAGAAACCGCCGAGATCGAAAGCGTCCAGCGCCTGGTGTACA GACACCTCGCGGCGTTCTGCACTCGGCGCGGTCCAGGAGATCGCGGGAGCGAACGAGAGA GCCATTCAGAAAGGGGAGAAGCGGGGGAGGACAGAGAACGGCTTGCGAAGAGGGAGAAAG AAATTCAAGAGGACTGCGAGAACGAATTATTTCTCAGTGCGGAACAAGGCGTGGAGTATG GACTCATCGACCAGGTCATCCAACCTCTCAGAGGCAGGCCTCATTGAAGTGAAATCGATA CCCGATGAAAACCGCAGATTCCGCTTTTTTTCCGAGGGTCCCCACCGTTGCAACTTATAT CCTTATCTCTACAGAGAGATATATTACGTCCCTGACTGTACATACATATATATATATTTA TATTTATTTATATCTATTTATATATAGGGATTGTGGGTGTAGGTGATTTGGTAGATCCAG GGAAAGTGAAGGCACAGGTATTGGGTATTTCCTTCTCCTTCGTGAGTGTGGGTGGGGGCG AAAAAACCGGTACGTTTTTCGATGCATGCATTGCCGACTGGCGAGAACTCCGAACTTCTC CACAGTTTTGACGAGCTTCGCAGTGCCGAGTGTGTCTTTCACTCTATTTCCGAGAAGCCG TAAGCAACTGTTAGT
  • Download Fasta

  • Fasta :-

    MQLLLSNTLSSSRSQLIPSHLCTSSELSPFFLRRFPALHFSCLARSFLVLSLLSSFAAAS SPSLSPPSFLQPPSSALSSLSSPFSSFSSLSTTFSSSPSSSLNSHRLLKPSGWSGKRRYL SPSSQKEGRSLVKHSFFLRSEGFGELARRSDGLAMTDGESVGCMYTPGHVSPYTVSDGSS FPGREVSETLDRFFLRRRVLFLQGPLTDELASFLASQLLFLAAHAEDEKGGRDEGERKED EEDDRGQDRNRAWRSDERVFCVSSQRDRRFASPHDRKRRRQMPFFSSLFPDSCTESECLT SRRQQESEQRQTTASCLPPVDLLINSPGGSVTAALSLLDLRHSLPFEVHTTSIGQAGGVA ALLLAAGTPGHRRAFPSCRFSLRQIEGRVEGQAETIERETAEIESVQRLVYRHLAAFCTR RGPGDRGSERESHSERGEAGEDRERLAKREKEIQEDCENELFLSAEQGVEYGLIDQVIQP LRGRPH

  • title: active site residues
  • coordinates: G358,R383,E460
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_318320124 SLSPSSQKEG0.998unspTGME49_318320124 SLSPSSQKEG0.998unspTGME49_318320124 SLSPSSQKEG0.998unspTGME49_318320272 SRRFASPHDR0.997unspTGME49_318320292 SLFPDSCTES0.991unspTGME49_318320381 SSCRFSLRQI0.991unspTGME49_318320428 SGDRGSERES0.997unspTGME49_318320432 SSERESHSER0.997unspTGME49_318320434 SRESHSERGE0.993unspTGME49_31832097 STFSSSPSSS0.995unspTGME49_318320121 SRRYLSPSSQ0.998unsp

TGME49_118320      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India