TGME49_323600 | OTU family cysteine protease

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_IDPredictionOTHERSPmTPCS_Position
TGME49_323600OTHER0.7598280.0667440.173428
No Results

  • Fasta :-

    >TGME49_323600 MVLSSGWRALIRCCQPVLATPNVSASDKQELAPSFVGRVDEEELNLESETKVNYRVHATL QGDICWTPSTASEEFDPESHSCADDAVIVSSFGSRVDAAELDLDRDADIVYDSAYEADNE EDAWSETGSEEDADESPRSSEVLTQADEDGQSFEGDLATTNFVASTQTGEDFSGDEWEIP EEISPAEGMTTRTPTPPGGSPGDCCGDGNEEKIFGRFAALHEKEQPVCQSLSQLPRDMQA PPLEQSVQASKLSQRSSSRPSAKLPPEMLPFIAPHPQWCRRFAYDFKTPAKSLSMVPQPE LSFYDAVVVERHRVAPDGNCQFRSVSYALLGTEDAHAEIRQEVAHYLRGNFSRLSWLINP DTLEEDEGRMARLDKKYRVRIPYKTYKGYPLAEDELKLNWVIRLGDARYRIWGDECTLAV MAEMYNIRIVVEQQEGDGRRATKMGSHAVQVIIPYDVVPEACIPTIFLIYDLQRQHYDVV EKVKPR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_323600.fa Sequence name : TGME49_323600 Sequence length : 486 VALUES OF COMPUTED PARAMETERS Coef20 : 4.801 CoefTot : 0.462 ChDiff : -38 ZoneTo : 26 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.600 1.406 0.116 0.585 MesoH : -1.119 0.196 -0.461 0.142 MuHd_075 : 26.027 16.004 7.482 4.796 MuHd_095 : 37.687 28.000 11.417 9.893 MuHd_100 : 36.242 25.173 10.777 9.245 MuHd_105 : 37.585 20.926 10.899 8.222 Hmax_075 : 14.000 20.883 6.405 4.650 Hmax_095 : 16.625 21.350 6.198 6.458 Hmax_100 : 18.000 21.700 6.460 6.900 Hmax_105 : 13.700 17.100 5.546 5.620 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1298 0.8702 DFMC : 0.2691 0.7309 This protein is probably imported in mitochondria. f(Ser) = 0.1538 f(Arg) = 0.0769 CMi = 0.86580 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 486 TGME49_323600 MVLSSGWRALIRCCQPVLATPNVSASDKQELAPSFVGRVDEEELNLESETKVNYRVHATLQGDICWTPSTASEEFDPESH 80 SCADDAVIVSSFGSRVDAAELDLDRDADIVYDSAYEADNEEDAWSETGSEEDADESPRSSEVLTQADEDGQSFEGDLATT 160 NFVASTQTGEDFSGDEWEIPEEISPAEGMTTRTPTPPGGSPGDCCGDGNEEKIFGRFAALHEKEQPVCQSLSQLPRDMQA 240 PPLEQSVQASKLSQRSSSRPSAKLPPEMLPFIAPHPQWCRRFAYDFKTPAKSLSMVPQPELSFYDAVVVERHRVAPDGNC 320 QFRSVSYALLGTEDAHAEIRQEVAHYLRGNFSRLSWLINPDTLEEDEGRMARLDKKYRVRIPYKTYKGYPLAEDELKLNW 400 VIRLGDARYRIWGDECTLAVMAEMYNIRIVVEQQEGDGRRATKMGSHAVQVIIPYDVVPEACIPTIFLIYDLQRQHYDVV 480 EKVKPR 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ...... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_323600 8 VLSSGWR|AL 0.084 . TGME49_323600 12 GWRALIR|CC 0.124 . TGME49_323600 28 NVSASDK|QE 0.061 . TGME49_323600 38 APSFVGR|VD 0.173 . TGME49_323600 51 NLESETK|VN 0.064 . TGME49_323600 55 ETKVNYR|VH 0.081 . TGME49_323600 95 VSSFGSR|VD 0.089 . TGME49_323600 105 AELDLDR|DA 0.111 . TGME49_323600 138 DADESPR|SS 0.122 . TGME49_323600 192 AEGMTTR|TP 0.086 . TGME49_323600 212 GDGNEEK|IF 0.065 . TGME49_323600 216 EEKIFGR|FA 0.112 . TGME49_323600 223 FAALHEK|EQ 0.058 . TGME49_323600 236 SLSQLPR|DM 0.118 . TGME49_323600 251 QSVQASK|LS 0.057 . TGME49_323600 255 ASKLSQR|SS 0.114 . TGME49_323600 259 SQRSSSR|PS 0.096 . TGME49_323600 263 SSRPSAK|LP 0.078 . TGME49_323600 280 PHPQWCR|RF 0.072 . TGME49_323600 281 HPQWCRR|FA 0.274 . TGME49_323600 287 RFAYDFK|TP 0.066 . TGME49_323600 291 DFKTPAK|SL 0.094 . TGME49_323600 311 DAVVVER|HR 0.075 . TGME49_323600 313 VVVERHR|VA 0.089 . TGME49_323600 323 DGNCQFR|SV 0.312 . TGME49_323600 340 DAHAEIR|QE 0.076 . TGME49_323600 348 EVAHYLR|GN 0.088 . TGME49_323600 353 LRGNFSR|LS 0.114 . TGME49_323600 369 LEEDEGR|MA 0.083 . TGME49_323600 372 DEGRMAR|LD 0.245 . TGME49_323600 375 RMARLDK|KY 0.130 . TGME49_323600 376 MARLDKK|YR 0.089 . TGME49_323600 378 RLDKKYR|VR 0.082 . TGME49_323600 380 DKKYRVR|IP 0.084 . TGME49_323600 384 RVRIPYK|TY 0.065 . TGME49_323600 387 IPYKTYK|GY 0.079 . TGME49_323600 397 LAEDELK|LN 0.062 . TGME49_323600 403 KLNWVIR|LG 0.106 . TGME49_323600 408 IRLGDAR|YR 0.100 . TGME49_323600 410 LGDARYR|IW 0.104 . TGME49_323600 428 AEMYNIR|IV 0.120 . TGME49_323600 439 QQEGDGR|RA 0.096 . TGME49_323600 440 QEGDGRR|AT 0.163 . TGME49_323600 443 DGRRATK|MG 0.201 . TGME49_323600 474 LIYDLQR|QH 0.093 . TGME49_323600 482 HYDVVEK|VK 0.058 . TGME49_323600 484 DVVEKVK|PR 0.063 . TGME49_323600 486 VEKVKPR|-- 0.108 . ____________________________^_________________

  • Fasta :-

    >TGME49_323600 ATGGTGCTCTCAAGTGGATGGCGTGCTCTGATACGCTGTTGTCAGCCGGTGCTCGCGACC CCTAACGTGAGTGCCTCTGACAAGCAAGAGCTTGCTCCCTCCTTCGTCGGCCGCGTCGAC GAAGAGGAACTAAACTTGGAGTCAGAGACCAAAGTAAACTACCGCGTCCATGCTACACTG CAAGGAGACATCTGCTGGACACCGAGTACGGCGAGCGAGGAGTTCGACCCGGAGTCCCAC TCTTGCGCTGACGATGCAGTCATTGTTTCGTCATTTGGGAGCCGAGTCGACGCCGCGGAA CTGGATCTGGACCGAGACGCTGACATCGTCTATGATTCTGCGTACGAAGCAGACAACGAA GAAGACGCGTGGTCAGAAACAGGGTCGGAAGAAGACGCGGACGAATCTCCTAGAAGTAGC GAGGTCTTGACTCAAGCTGACGAAGATGGCCAGAGTTTCGAAGGAGACCTTGCTACTACG AACTTCGTCGCGTCGACGCAGACAGGCGAAGACTTCTCTGGAGACGAATGGGAAATTCCT GAGGAGATTTCACCAGCAGAGGGGATGACGACGAGGACACCAACACCTCCAGGAGGATCA CCGGGAGATTGCTGCGGAGATGGAAATGAGGAAAAAATCTTCGGTCGATTCGCAGCCCTC CACGAGAAGGAGCAACCCGTGTGTCAATCTCTGAGTCAACTGCCCAGAGACATGCAGGCG CCTCCTTTGGAGCAGTCGGTTCAAGCGTCGAAGTTGTCGCAGCGGTCCTCCAGCCGACCT TCAGCCAAGCTACCACCGGAAATGTTGCCCTTCATCGCCCCTCATCCGCAATGGTGCCGT CGCTTCGCCTATGACTTCAAAACGCCAGCGAAGAGTCTGTCCATGGTGCCGCAACCCGAG CTGTCATTCTACGACGCGGTGGTTGTGGAGCGGCACCGGGTTGCTCCTGACGGAAATTGT CAATTCCGTTCCGTCAGCTACGCGTTGCTAGGCACAGAGGATGCCCATGCGGAAATCCGG CAAGAGGTGGCGCACTATCTGAGGGGCAACTTTAGTCGGCTTAGCTGGCTGATAAACCCG GACACACTGGAGGAAGACGAGGGGAGAATGGCTCGACTCGACAAGAAATACAGAGTCAGA ATTCCGTACAAAACCTACAAAGGTTATCCCTTGGCAGAAGACGAGCTCAAACTTAATTGG GTTATCAGGCTTGGAGACGCACGATACAGGATCTGGGGTGACGAGTGCACTCTCGCTGTG ATGGCGGAGATGTACAACATCCGGATCGTTGTTGAGCAACAAGAAGGCGACGGGCGTCGG GCAACCAAAATGGGTTCGCATGCAGTCCAGGTTATCATACCATACGATGTGGTTCCTGAG GCATGCATCCCGACGATTTTCCTGATCTACGACCTTCAGCGTCAACACTACGACGTGGTC GAAAAGGTCAAACCCAGGTGA
  • Download Fasta

  • Fasta :-

    MVLSSGWRALIRCCQPVLATPNVSASDKQELAPSFVGRVDEEELNLESETKVNYRVHATL QGDICWTPSTASEEFDPESHSCADDAVIVSSFGSRVDAAELDLDRDADIVYDSAYEADNE EDAWSETGSEEDADESPRSSEVLTQADEDGQSFEGDLATTNFVASTQTGEDFSGDEWEIP EEISPAEGMTTRTPTPPGGSPGDCCGDGNEEKIFGRFAALHEKEQPVCQSLSQLPRDMQA PPLEQSVQASKLSQRSSSRPSAKLPPEMLPFIAPHPQWCRRFAYDFKTPAKSLSMVPQPE LSFYDAVVVERHRVAPDGNCQFRSVSYALLGTEDAHAEIRQEVAHYLRGNFSRLSWLINP DTLEEDEGRMARLDKKYRVRIPYKTYKGYPLAEDELKLNWVIRLGDARYRIWGDECTLAV MAEMYNIRIVVEQQEGDGRRATKMGSHAVQVIIPYDVVPEACIPTIFLIYDLQRQHYDVV EKVKPR

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_323600129 SSETGSEEDA0.996unspTGME49_323600129 SSETGSEEDA0.996unspTGME49_323600129 SSETGSEEDA0.996unspTGME49_323600136 SDADESPRSS0.996unspTGME49_323600173 SGEDFSGDEW0.992unspTGME49_323600200 SPPGGSPGDC0.993unspTGME49_323600257 SSQRSSSRPS0.99unspTGME49_323600258 SQRSSSRPSA0.995unspTGME49_323600261 SSSRPSAKLP0.997unspTGME49_323600302 SQPELSFYDA0.993unspTGME49_32360072 SPSTASEEFD0.992unspTGME49_323600113 SIVYDSAYEA0.994unsp

TGME49_123600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India