TGME49_325300 | proteasome subunit alpha type, putative

UniProt_ID:

Computed_GO_Component_IDs: GO:0019773
Computed_GO_Components: proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175
Computed_GO_Functions: endopeptidase activity
Computed_GO_Process_IDs: GO:0006511
Computed_GO_Processes: ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	TGME49_325300	OTHER	0.981577	0.018222	0.000202

No Results

Fasta :-
>TGME49_325300 MSYDRAITVFSPDGHLLQVEYAMEAVRRGGCAVGVMGKDLVVLAVEKKAAARLQEPR
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_325300.fa Sequence name : TGME49_325300 Sequence length : 57 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : 1 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.776 1.624 0.157 0.552 MesoH : -1.532 -1.532 -1.532 -1.532 MuHd_075 : 28.573 14.937 6.543 4.663 MuHd_095 : 12.129 9.750 3.119 2.812 MuHd_100 : 14.109 14.515 5.303 4.707 MuHd_105 : 15.524 17.553 6.307 6.098 Hmax_075 : 12.862 11.025 1.795 4.043 Hmax_095 : 7.000 6.037 0.113 3.526 Hmax_100 : 7.400 12.100 0.248 4.210 Hmax_105 : 3.600 11.600 -0.028 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9980 0.0020 DFMC : 0.9980 0.0020

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 57 TGME49_325300 MSYDRAITVFSPDGHLLQVEYAMEAVRRGGCAVGVMGKDLVVLAVEKKAAARLQEPR 80 ......................................................... 80 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_325300 5 --MSYDR|AI 0.082 . TGME49_325300 27 YAMEAVR|RG 0.094 . TGME49_325300 28 AMEAVRR|GG 0.206 . TGME49_325300 38 AVGVMGK|DL 0.064 . TGME49_325300 47 VVLAVEK|KA 0.060 . TGME49_325300 48 VLAVEKK|AA 0.113 . TGME49_325300 52 EKKAAAR|LQ 0.090 . TGME49_325300 57 ARLQEPR|-- 0.101 . ____________________________^_________________

Fasta :-
>TGME49_325300 ATGAGTTACGACCGCGCCATCACAGTCTTCTCCCCAGACGGGCACCTTCTCCAGGTCGAG TACGCCATGGAGGCTGTTCGACGAGGAGGATGTGCCGTCGGAGTCATGGGGAAAGATCTT GTCGTCCTTGCAGTTGAAAAGAAAGCGGCAGCGAGACTTCAAGAGCCTCGGTAA
Download Fasta

Fasta :-

MSYDRAITVFSPDGHLLQVEYAMEAVRRGGCAVGVMGKDLVVLAVEKKAAARLQEPR

Proteasome subunits

No Results

TGME49_325300 | proteasome subunit alpha type, putative

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0019773

Computed_GO_Components: proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175

Computed_GO_Functions: endopeptidase activity

Computed_GO_Process_IDs: GO:0006511

Computed_GO_Processes: ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

TGME49_125300

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India