Tbg972.10.1410 | serine carboxypeptidase III precursor, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004185      

  • Computed_GO_Functions:  serine-type carboxypeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Tbg972.10.1410SP0.0003340.9995850.000080CS pos: 21-22. ASA-LQ. Pr: 0.7869
No Results

  • Fasta :-

    >Tbg972.10.1410 MLCHTSLFLISLLLLLQSASALQAIRRPTLRTTGSGWEPCDPGVNQWSGYFDIPGEQSDK HYFYWAFGPRDGNPNAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNH AYVIYIDQPAGVGFSYADKADYDKNEAEVSEDMYNFLQAFFGEHEDLRENDFFVVGESYG GHFAPATAYRINQGNKKGEGIYIPLAGLAVGNGLTDPYTQYASYPRLAWDWCKEVLGSPC VSSFVHVMMSAMVPACQSTISACDADNSSSADSSCKLSRVTCGPMVALFSATGLNVYDIR KPCDGPLCYNTTGVDNFMNREDVQRSLGVDPMTWQACNMEVNLMFAVDWFKNFNYTISGL LEDGVRVMIYAGDMDFICNWIGNKEWTLALQWSGSEEFVKAPDTPFSSIDGSAAGLVRSV SSNTSSMHFSFVQVYRAGHMVPMDQPAAASTIIEKFMRNEPLS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/598 Sequence name : 598 Sequence length : 463 VALUES OF COMPUTED PARAMETERS Coef20 : 4.833 CoefTot : 1.306 ChDiff : -23 ZoneTo : 37 KR : 3 DE : 0 CleavSite : 33 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.906 2.035 0.286 0.651 MesoH : 0.145 0.498 -0.096 0.270 MuHd_075 : 40.971 23.196 9.719 9.240 MuHd_095 : 34.989 16.573 7.828 8.090 MuHd_100 : 28.885 16.846 7.225 6.639 MuHd_105 : 28.012 16.593 7.061 6.441 Hmax_075 : 14.900 12.133 2.905 5.090 Hmax_095 : 12.250 6.212 1.772 3.728 Hmax_100 : 14.900 16.200 1.772 5.090 Hmax_105 : 11.900 10.800 1.831 4.110 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1579 0.8421 DFMC : 0.0818 0.9182 This protein is probably imported in mitochondria. f(Ser) = 0.1351 f(Arg) = 0.0811 CMi = 0.73638 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 463 Tbg972.10.1410 MLCHTSLFLISLLLLLQSASALQAIRRPTLRTTGSGWEPCDPGVNQWSGYFDIPGEQSDKHYFYWAFGPRDGNPNAPVLL 80 WMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNHAYVIYIDQPAGVGFSYADKADYDKNEAEVSEDMYNFLQAF 160 FGEHEDLRENDFFVVGESYGGHFAPATAYRINQGNKKGEGIYIPLAGLAVGNGLTDPYTQYASYPRLAWDWCKEVLGSPC 240 VSSFVHVMMSAMVPACQSTISACDADNSSSADSSCKLSRVTCGPMVALFSATGLNVYDIRKPCDGPLCYNTTGVDNFMNR 320 EDVQRSLGVDPMTWQACNMEVNLMFAVDWFKNFNYTISGLLEDGVRVMIYAGDMDFICNWIGNKEWTLALQWSGSEEFVK 400 APDTPFSSIDGSAAGLVRSVSSNTSSMHFSFVQVYRAGHMVPMDQPAAASTIIEKFMRNEPLS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Tbg972.10.1410 26 SALQAIR|RP 0.065 . Tbg972.10.1410 27 ALQAIRR|PT 0.124 . Tbg972.10.1410 31 IRRPTLR|TT 0.128 . Tbg972.10.1410 60 PGEQSDK|HY 0.060 . Tbg972.10.1410 70 YWAFGPR|DG 0.101 . Tbg972.10.1410 139 GFSYADK|AD 0.073 . Tbg972.10.1410 144 DKADYDK|NE 0.058 . Tbg972.10.1410 168 GEHEDLR|EN 0.084 . Tbg972.10.1410 190 APATAYR|IN 0.106 . Tbg972.10.1410 196 RINQGNK|KG 0.064 . Tbg972.10.1410 197 INQGNKK|GE 0.130 . Tbg972.10.1410 226 QYASYPR|LA 0.092 . Tbg972.10.1410 233 LAWDWCK|EV 0.073 . Tbg972.10.1410 276 SADSSCK|LS 0.057 . Tbg972.10.1410 279 SSCKLSR|VT 0.099 . Tbg972.10.1410 300 LNVYDIR|KP 0.088 . Tbg972.10.1410 301 NVYDIRK|PC 0.071 . Tbg972.10.1410 320 VDNFMNR|ED 0.077 . Tbg972.10.1410 325 NREDVQR|SL 0.192 . Tbg972.10.1410 351 FAVDWFK|NF 0.058 . Tbg972.10.1410 366 LLEDGVR|VM 0.076 . Tbg972.10.1410 384 CNWIGNK|EW 0.060 . Tbg972.10.1410 400 GSEEFVK|AP 0.070 . Tbg972.10.1410 418 SAAGLVR|SV 0.261 . Tbg972.10.1410 436 SFVQVYR|AG 0.110 . Tbg972.10.1410 455 ASTIIEK|FM 0.062 . Tbg972.10.1410 458 IIEKFMR|NE 0.080 . ____________________________^_________________

  • Fasta :-

    >Tbg972.10.1410 ATGCTGTGCCACACGTCGCTTTTTCTTATCTCGTTGCTACTCTTATTGCAGAGTGCAAGC GCCCTTCAGGCTATCCGCCGTCCGACGCTTCGCACGACGGGCTCTGGTTGGGAGCCTTGT GACCCCGGCGTTAATCAATGGAGCGGATATTTTGATATTCCTGGAGAGCAGAGTGACAAA CATTACTTCTACTGGGCATTTGGACCACGTGATGGCAATCCCAATGCCCCAGTGCTCCTG TGGATGACAGGTGGTCCTGGATGTAGTTCCATGTTTGCGCTACTTGCAGAGAATGGACCT TGCCTTATGAACGAAACGACTGGTGACATATACAACAATACGTACTCGTGGAACAACCAC GCGTATGTAATATATATCGATCAACCTGCCGGTGTGGGCTTTTCGTATGCGGATAAAGCG GATTATGATAAGAATGAAGCGGAGGTATCGGAGGACATGTACAACTTTCTACAGGCCTTC TTTGGTGAGCACGAGGACCTGCGTGAAAACGACTTCTTTGTTGTTGGGGAAAGCTACGGT GGCCACTTTGCTCCGGCTACAGCTTACCGCATTAACCAAGGCAATAAAAAGGGTGAAGGC ATATACATTCCTCTTGCAGGATTGGCTGTAGGAAACGGTTTAACAGATCCGTATACACAA TATGCGTCATATCCCAGACTTGCATGGGACTGGTGCAAGGAAGTTCTTGGAAGTCCGTGT GTATCTTCCTTTGTTCATGTGATGATGTCGGCGATGGTGCCCGCTTGTCAAAGTACTATT TCTGCTTGTGACGCTGATAATTCATCATCCGCGGACTCGTCGTGCAAGCTTTCCCGTGTG ACTTGTGGTCCGATGGTAGCTCTGTTTTCAGCTACAGGCCTGAACGTTTATGATATTCGT AAGCCATGTGATGGGCCATTATGTTACAACACAACGGGAGTTGACAACTTTATGAACCGT GAGGATGTTCAGAGGTCTCTGGGTGTAGATCCAATGACTTGGCAAGCTTGTAACATGGAG GTGAACCTGATGTTTGCCGTTGACTGGTTTAAGAACTTTAACTACACAATTAGTGGACTC CTCGAAGATGGAGTTCGAGTAATGATTTATGCCGGTGATATGGACTTTATCTGCAACTGG ATTGGAAATAAGGAGTGGACACTTGCACTTCAGTGGTCTGGAAGTGAAGAGTTTGTGAAG GCCCCTGATACCCCATTCTCATCTATTGATGGTAGTGCTGCGGGTCTTGTACGTAGCGTA TCATCAAACACATCGTCAATGCACTTCAGTTTTGTGCAGGTGTACCGTGCGGGTCACATG GTGCCGATGGATCAACCTGCTGCGGCATCCACTATAATTGAGAAATTCATGAGGAACGAA CCACTCTCGTAA
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  • Fasta :-

    No Results
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No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Tbg972.10.141029 TIRRPTLRTT0.992unspTbg972.10.1410407 SDTPFSSIDG0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India